data_3DLH
#
_model_server_result.job_id            n5bTyrAXGI2KNSpkuVvw7A 
_model_server_result.datetime_utc      '2024-11-15 23:26:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dlh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":689}' 
#
_entry.id    3DLH 
#
_exptl.entry_id    3DLH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DLH 
_cell.length_a            74.744 
_cell.length_b            114.629 
_cell.length_c            175.689 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DLH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,K,M,O 1 1 
B,D,I,J,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OXT VAL 685 A VAL 685 1_555 E MG MG . A MG 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc2 E MG MG . A MG 686 1_555 C OP1 DT 1 X DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc3 E MG MG . A MG 686 1_555 C OP1 DA 3 X DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc4 B OXT VAL 685 B VAL 685 1_555 L MG MG . Y MG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc5 L MG MG . Y MG 2 1_555 D OP2 DT 1 Y DT 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc6 L MG MG . Y MG 2 1_555 D OP1 DA 3 Y DA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 404 n n 
P O2 PO4 sing 405 n n 
P O3 PO4 sing 406 n n 
P O4 PO4 sing 407 n n 
#
_atom_sites.entry_id                     3DLH 
_atom_sites.fract_transf_matrix[1][1]    0.013379 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005692 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 686 686 MG MG . 
F 3 MG A 1 687 687 MG MG . 
G 4 PGE A 1 688 688 PGE PGE . 
H 5 PO4 A 1 689 689 PO4 PO4 . 
I 6 ACY B 1 686 686 ACY ACY . 
J 6 ACY B 1 687 687 ACY ACY . 
K 5 PO4 X 1 22 22 PO4 PO4 . 
L 3 MG Y 1 2 2 MG MG . 
M 7 HOH A 1 691 691 HOH HOH . 
M 7 HOH A 2 692 692 HOH HOH . 
M 7 HOH A 3 693 693 HOH HOH . 
M 7 HOH A 4 694 694 HOH HOH . 
M 7 HOH A 5 695 695 HOH HOH . 
M 7 HOH A 6 696 696 HOH HOH . 
M 7 HOH A 7 697 697 HOH HOH . 
M 7 HOH A 8 698 698 HOH HOH . 
M 7 HOH A 9 699 699 HOH HOH . 
M 7 HOH A 10 700 700 HOH HOH . 
M 7 HOH A 11 701 701 HOH HOH . 
M 7 HOH A 12 702 702 HOH HOH . 
M 7 HOH A 13 703 703 HOH HOH . 
M 7 HOH A 14 704 704 HOH HOH . 
M 7 HOH A 15 705 705 HOH HOH . 
M 7 HOH A 16 706 706 HOH HOH . 
M 7 HOH A 17 707 707 HOH HOH . 
M 7 HOH A 18 708 708 HOH HOH . 
M 7 HOH A 19 709 709 HOH HOH . 
M 7 HOH A 20 711 711 HOH HOH . 
M 7 HOH A 21 712 712 HOH HOH . 
M 7 HOH A 22 713 713 HOH HOH . 
M 7 HOH A 23 714 714 HOH HOH . 
M 7 HOH A 24 715 715 HOH HOH . 
M 7 HOH A 25 716 716 HOH HOH . 
M 7 HOH A 26 717 717 HOH HOH . 
M 7 HOH A 27 718 718 HOH HOH . 
M 7 HOH A 28 719 719 HOH HOH . 
M 7 HOH A 29 720 720 HOH HOH . 
M 7 HOH A 30 721 721 HOH HOH . 
M 7 HOH A 31 722 722 HOH HOH . 
M 7 HOH A 32 723 723 HOH HOH . 
M 7 HOH A 33 724 724 HOH HOH . 
M 7 HOH A 34 725 725 HOH HOH . 
M 7 HOH A 35 726 726 HOH HOH . 
M 7 HOH A 36 727 727 HOH HOH . 
M 7 HOH A 37 728 728 HOH HOH . 
M 7 HOH A 38 729 729 HOH HOH . 
M 7 HOH A 39 730 730 HOH HOH . 
N 7 HOH B 1 690 690 HOH HOH . 
N 7 HOH B 2 691 691 HOH HOH . 
N 7 HOH B 3 692 692 HOH HOH . 
N 7 HOH B 4 693 693 HOH HOH . 
N 7 HOH B 5 694 694 HOH HOH . 
N 7 HOH B 6 695 695 HOH HOH . 
N 7 HOH B 7 696 696 HOH HOH . 
N 7 HOH B 8 697 697 HOH HOH . 
N 7 HOH B 9 698 698 HOH HOH . 
N 7 HOH B 10 699 699 HOH HOH . 
N 7 HOH B 11 700 700 HOH HOH . 
N 7 HOH B 12 701 701 HOH HOH . 
N 7 HOH B 13 702 702 HOH HOH . 
N 7 HOH B 14 703 703 HOH HOH . 
N 7 HOH B 15 704 704 HOH HOH . 
N 7 HOH B 16 705 705 HOH HOH . 
N 7 HOH B 17 706 706 HOH HOH . 
N 7 HOH B 18 707 707 HOH HOH . 
N 7 HOH B 19 708 708 HOH HOH . 
N 7 HOH B 20 709 709 HOH HOH . 
N 7 HOH B 21 710 710 HOH HOH . 
N 7 HOH B 22 711 711 HOH HOH . 
N 7 HOH B 23 712 712 HOH HOH . 
N 7 HOH B 24 713 713 HOH HOH . 
N 7 HOH B 25 714 714 HOH HOH . 
N 7 HOH B 26 715 715 HOH HOH . 
N 7 HOH B 27 716 716 HOH HOH . 
N 7 HOH B 28 717 717 HOH HOH . 
N 7 HOH B 29 718 718 HOH HOH . 
N 7 HOH B 30 719 719 HOH HOH . 
N 7 HOH B 31 720 720 HOH HOH . 
N 7 HOH B 32 721 721 HOH HOH . 
N 7 HOH B 33 722 722 HOH HOH . 
N 7 HOH B 34 723 723 HOH HOH . 
N 7 HOH B 35 724 724 HOH HOH . 
O 7 HOH X 1 23 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . H 5 18.37 25.163 2.697 1 150.25 ? P PO4 689 A 1 
HETATM 2 O O1 PO4 . . . H 5 18.82 25.639 1.367 1 150.28 ? O1 PO4 689 A 1 
HETATM 3 O O2 PO4 . . . H 5 17.059 24.473 2.559 1 150.02 ? O2 PO4 689 A 1 
HETATM 4 O O3 PO4 . . . H 5 19.374 24.216 3.249 1 149.84 ? O3 PO4 689 A 1 
HETATM 5 O O4 PO4 . . . H 5 18.227 26.322 3.613 1 150.14 ? O4 PO4 689 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           5 
#