data_3DLN # _model_server_result.job_id BAbBJLKleAXEHyq-zSaoLA _model_server_result.datetime_utc '2024-12-18 05:32:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dln # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":374}' # _entry.id 3DLN # _exptl.entry_id 3DLN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DLN _cell.length_a 47.585 _cell.length_b 47.402 _cell.length_c 137.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DLN _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 222 A CYS 206 1_555 A SG CYS 277 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A NE2 HIS 39 A HIS 23 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 102 n n N H GLU sing 103 n n N H2 GLU sing 104 n n CA C GLU sing 105 n n CA CB GLU sing 106 n n CA HA GLU sing 107 n n C O GLU doub 108 n n C OXT GLU sing 109 n n CB CG GLU sing 110 n n CB HB2 GLU sing 111 n n CB HB3 GLU sing 112 n n CG CD GLU sing 113 n n CG HG2 GLU sing 114 n n CG HG3 GLU sing 115 n n CD OE1 GLU doub 116 n n CD OE2 GLU sing 117 n n OE2 HE2 GLU sing 118 n n OXT HXT GLU sing 119 n n # _atom_sites.entry_id 3DLN _atom_sites.fract_transf_matrix[1][1] 0.021015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 GLU A 1 374 374 GLU GLU . D 4 HOH A 1 375 375 HOH HOH . D 4 HOH A 2 376 376 HOH HOH . D 4 HOH A 3 377 377 HOH HOH . D 4 HOH A 4 378 378 HOH HOH . D 4 HOH A 5 379 379 HOH HOH . D 4 HOH A 6 380 380 HOH HOH . D 4 HOH A 7 381 381 HOH HOH . D 4 HOH A 8 382 382 HOH HOH . D 4 HOH A 9 383 383 HOH HOH . D 4 HOH A 10 384 384 HOH HOH . D 4 HOH A 11 385 385 HOH HOH . D 4 HOH A 12 386 386 HOH HOH . D 4 HOH A 13 387 387 HOH HOH . D 4 HOH A 14 388 388 HOH HOH . D 4 HOH A 15 389 389 HOH HOH . D 4 HOH A 16 390 390 HOH HOH . D 4 HOH A 17 391 391 HOH HOH . D 4 HOH A 18 392 392 HOH HOH . D 4 HOH A 19 393 393 HOH HOH . D 4 HOH A 20 394 394 HOH HOH . D 4 HOH A 21 395 395 HOH HOH . D 4 HOH A 22 396 396 HOH HOH . D 4 HOH A 23 397 397 HOH HOH . D 4 HOH A 24 398 398 HOH HOH . D 4 HOH A 25 399 399 HOH HOH . D 4 HOH A 26 400 400 HOH HOH . D 4 HOH A 27 401 401 HOH HOH . D 4 HOH A 28 402 402 HOH HOH . D 4 HOH A 29 403 403 HOH HOH . D 4 HOH A 30 404 404 HOH HOH . D 4 HOH A 31 405 405 HOH HOH . D 4 HOH A 32 406 406 HOH HOH . D 4 HOH A 33 407 407 HOH HOH . D 4 HOH A 34 408 408 HOH HOH . D 4 HOH A 35 409 409 HOH HOH . D 4 HOH A 36 410 410 HOH HOH . D 4 HOH A 37 411 411 HOH HOH . D 4 HOH A 38 412 412 HOH HOH . D 4 HOH A 39 413 413 HOH HOH . D 4 HOH A 40 414 414 HOH HOH . D 4 HOH A 41 415 415 HOH HOH . D 4 HOH A 42 416 416 HOH HOH . D 4 HOH A 43 417 417 HOH HOH . D 4 HOH A 44 418 418 HOH HOH . D 4 HOH A 45 419 419 HOH HOH . D 4 HOH A 46 420 420 HOH HOH . D 4 HOH A 47 421 421 HOH HOH . D 4 HOH A 48 422 422 HOH HOH . D 4 HOH A 49 423 423 HOH HOH . D 4 HOH A 50 424 424 HOH HOH . D 4 HOH A 51 425 425 HOH HOH . D 4 HOH A 52 426 426 HOH HOH . D 4 HOH A 53 427 427 HOH HOH . D 4 HOH A 54 428 428 HOH HOH . D 4 HOH A 55 429 429 HOH HOH . D 4 HOH A 56 430 430 HOH HOH . D 4 HOH A 57 431 431 HOH HOH . D 4 HOH A 58 432 432 HOH HOH . D 4 HOH A 59 433 433 HOH HOH . D 4 HOH A 60 434 434 HOH HOH . D 4 HOH A 61 435 435 HOH HOH . D 4 HOH A 62 436 436 HOH HOH . D 4 HOH A 63 437 437 HOH HOH . D 4 HOH A 64 438 438 HOH HOH . D 4 HOH A 65 439 439 HOH HOH . D 4 HOH A 66 440 440 HOH HOH . D 4 HOH A 67 441 441 HOH HOH . D 4 HOH A 68 442 442 HOH HOH . D 4 HOH A 69 443 443 HOH HOH . D 4 HOH A 70 444 444 HOH HOH . D 4 HOH A 71 445 445 HOH HOH . D 4 HOH A 72 446 446 HOH HOH . D 4 HOH A 73 447 447 HOH HOH . D 4 HOH A 74 448 448 HOH HOH . D 4 HOH A 75 449 449 HOH HOH . D 4 HOH A 76 450 450 HOH HOH . D 4 HOH A 77 451 451 HOH HOH . D 4 HOH A 78 452 452 HOH HOH . D 4 HOH A 79 453 453 HOH HOH . D 4 HOH A 80 454 454 HOH HOH . D 4 HOH A 81 455 455 HOH HOH . D 4 HOH A 82 456 456 HOH HOH . D 4 HOH A 83 457 457 HOH HOH . D 4 HOH A 84 458 458 HOH HOH . D 4 HOH A 85 459 459 HOH HOH . D 4 HOH A 86 460 460 HOH HOH . D 4 HOH A 87 461 461 HOH HOH . D 4 HOH A 88 462 462 HOH HOH . D 4 HOH A 89 463 463 HOH HOH . D 4 HOH A 90 464 464 HOH HOH . D 4 HOH A 91 465 465 HOH HOH . D 4 HOH A 92 466 466 HOH HOH . D 4 HOH A 93 467 467 HOH HOH . D 4 HOH A 94 468 468 HOH HOH . D 4 HOH A 95 469 469 HOH HOH . D 4 HOH A 96 470 470 HOH HOH . D 4 HOH A 97 471 471 HOH HOH . D 4 HOH A 98 472 472 HOH HOH . D 4 HOH A 99 473 473 HOH HOH . D 4 HOH A 100 474 474 HOH HOH . D 4 HOH A 101 475 475 HOH HOH . D 4 HOH A 102 476 476 HOH HOH . D 4 HOH A 103 477 477 HOH HOH . D 4 HOH A 104 478 478 HOH HOH . D 4 HOH A 105 479 479 HOH HOH . D 4 HOH A 106 480 480 HOH HOH . D 4 HOH A 107 481 481 HOH HOH . D 4 HOH A 108 482 482 HOH HOH . D 4 HOH A 109 483 483 HOH HOH . D 4 HOH A 110 484 484 HOH HOH . D 4 HOH A 111 485 485 HOH HOH . D 4 HOH A 112 486 486 HOH HOH . D 4 HOH A 113 487 487 HOH HOH . D 4 HOH A 114 488 488 HOH HOH . D 4 HOH A 115 489 489 HOH HOH . D 4 HOH A 116 490 490 HOH HOH . D 4 HOH A 117 491 491 HOH HOH . D 4 HOH A 118 492 492 HOH HOH . D 4 HOH A 119 493 493 HOH HOH . D 4 HOH A 120 494 494 HOH HOH . D 4 HOH A 121 495 495 HOH HOH . D 4 HOH A 122 496 496 HOH HOH . D 4 HOH A 123 497 497 HOH HOH . D 4 HOH A 124 498 498 HOH HOH . D 4 HOH A 125 499 499 HOH HOH . D 4 HOH A 126 500 500 HOH HOH . D 4 HOH A 127 501 501 HOH HOH . D 4 HOH A 128 502 502 HOH HOH . D 4 HOH A 129 503 503 HOH HOH . D 4 HOH A 130 504 504 HOH HOH . D 4 HOH A 131 505 505 HOH HOH . D 4 HOH A 132 506 506 HOH HOH . D 4 HOH A 133 507 507 HOH HOH . D 4 HOH A 134 508 508 HOH HOH . D 4 HOH A 135 509 509 HOH HOH . D 4 HOH A 136 510 510 HOH HOH . D 4 HOH A 137 511 511 HOH HOH . D 4 HOH A 138 512 512 HOH HOH . D 4 HOH A 139 513 513 HOH HOH . D 4 HOH A 140 514 514 HOH HOH . D 4 HOH A 141 515 515 HOH HOH . D 4 HOH A 142 516 516 HOH HOH . D 4 HOH A 143 517 517 HOH HOH . D 4 HOH A 144 518 518 HOH HOH . D 4 HOH A 145 519 519 HOH HOH . D 4 HOH A 146 520 520 HOH HOH . D 4 HOH A 147 521 521 HOH HOH . D 4 HOH A 148 522 522 HOH HOH . D 4 HOH A 149 523 523 HOH HOH . D 4 HOH A 150 524 524 HOH HOH . D 4 HOH A 151 525 525 HOH HOH . D 4 HOH A 152 526 526 HOH HOH . D 4 HOH A 153 527 527 HOH HOH . D 4 HOH A 154 528 528 HOH HOH . D 4 HOH A 155 529 529 HOH HOH . D 4 HOH A 156 530 530 HOH HOH . D 4 HOH A 157 531 531 HOH HOH . D 4 HOH A 158 532 532 HOH HOH . D 4 HOH A 159 533 533 HOH HOH . D 4 HOH A 160 534 534 HOH HOH . D 4 HOH A 161 535 535 HOH HOH . D 4 HOH A 162 536 536 HOH HOH . D 4 HOH A 163 537 537 HOH HOH . D 4 HOH A 164 538 538 HOH HOH . D 4 HOH A 165 539 539 HOH HOH . D 4 HOH A 166 540 540 HOH HOH . D 4 HOH A 167 541 541 HOH HOH . D 4 HOH A 168 542 542 HOH HOH . D 4 HOH A 169 543 543 HOH HOH . D 4 HOH A 170 544 544 HOH HOH . D 4 HOH A 171 545 545 HOH HOH . D 4 HOH A 172 546 546 HOH HOH . D 4 HOH A 173 547 547 HOH HOH . D 4 HOH A 174 548 548 HOH HOH . D 4 HOH A 175 549 549 HOH HOH . D 4 HOH A 176 550 550 HOH HOH . D 4 HOH A 177 551 551 HOH HOH . D 4 HOH A 178 552 552 HOH HOH . D 4 HOH A 179 553 553 HOH HOH . D 4 HOH A 180 554 554 HOH HOH . D 4 HOH A 181 555 555 HOH HOH . D 4 HOH A 182 556 556 HOH HOH . D 4 HOH A 183 557 557 HOH HOH . D 4 HOH A 184 558 558 HOH HOH . D 4 HOH A 185 559 559 HOH HOH . D 4 HOH A 186 560 560 HOH HOH . D 4 HOH A 187 561 561 HOH HOH . D 4 HOH A 188 562 562 HOH HOH . D 4 HOH A 189 563 563 HOH HOH . D 4 HOH A 190 564 564 HOH HOH . D 4 HOH A 191 565 565 HOH HOH . D 4 HOH A 192 566 566 HOH HOH . D 4 HOH A 193 567 567 HOH HOH . D 4 HOH A 194 568 568 HOH HOH . D 4 HOH A 195 569 569 HOH HOH . D 4 HOH A 196 570 570 HOH HOH . D 4 HOH A 197 571 571 HOH HOH . D 4 HOH A 198 572 572 HOH HOH . D 4 HOH A 199 573 573 HOH HOH . D 4 HOH A 200 574 574 HOH HOH . D 4 HOH A 201 575 575 HOH HOH . D 4 HOH A 202 576 576 HOH HOH . D 4 HOH A 203 577 577 HOH HOH . D 4 HOH A 204 578 578 HOH HOH . D 4 HOH A 205 579 579 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . C 3 20.806 20.678 13.358 1 10.79 ? N GLU 374 A 1 HETATM 2 C CA GLU . . . C 3 20.57 19.376 14.053 1 10.98 ? CA GLU 374 A 1 HETATM 3 C C GLU . . . C 3 19.078 19.065 14.128 1 11.42 ? C GLU 374 A 1 HETATM 4 O O GLU . . . C 3 18.722 18.034 14.727 1 11.61 ? O GLU 374 A 1 HETATM 5 C CB GLU . . . C 3 21.163 19.419 15.466 1 11.91 ? CB GLU 374 A 1 HETATM 6 C CG GLU . . . C 3 22.682 19.317 15.508 1 12.47 ? CG GLU 374 A 1 HETATM 7 C CD GLU . . . C 3 23.186 17.914 15.238 1 13.09 ? CD GLU 374 A 1 HETATM 8 O OE1 GLU . . . C 3 24.39 17.761 14.934 1 16.21 ? OE1 GLU 374 A 1 HETATM 9 O OE2 GLU . . . C 3 22.387 16.957 15.343 1 13.22 ? OE2 GLU 374 A 1 HETATM 10 O OXT GLU . . . C 3 18.285 19.864 13.581 1 10.5 ? OXT GLU 374 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #