data_3DM2 # _model_server_result.job_id SkZ0PfmP79Y6sIaXwvOsYA _model_server_result.datetime_utc '2025-01-18 07:04:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":999}' # _entry.id 3DM2 # _exptl.entry_id 3DM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.919 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[amino(dihydroxy)-lambda~4~-sulfanyl]-2-methylphenyl}-2-(4-chloro-2-{[3-fluoro-5-(trifluoromethyl)phenyl]carbonyl}phenoxy)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DM2 _cell.length_a 135.91 _cell.length_b 109.21 _cell.length_c 71.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C23 H19 Cl F4 N2 O5 S' _chem_comp.formula_weight 546.919 _chem_comp.id GWE _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[amino(dihydroxy)-lambda~4~-sulfanyl]-2-methylphenyl}-2-(4-chloro-2-{[3-fluoro-5-(trifluoromethyl)phenyl]carbonyl}phenoxy)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GWE sing 144 n y C2 C3 GWE doub 145 n y C2 C7 GWE sing 146 n n C3 H3 GWE sing 147 n n C4 C3 GWE sing 148 n y C4 CL1 GWE sing 149 n n C5 C4 GWE doub 150 n y C5 H5 GWE sing 151 n n C6 C1 GWE doub 152 n y C6 C5 GWE sing 153 n y C6 H6 GWE sing 154 n n C7 C8 GWE sing 155 n n O1 C7 GWE doub 156 n n C8 C13 GWE doub 157 n y C8 C9 GWE sing 158 n y C9 C10 GWE doub 159 n y C9 H9 GWE sing 160 n n C10 C11 GWE sing 161 n y C10 F4 GWE sing 162 n n C11 H11 GWE sing 163 n n C12 C11 GWE doub 164 n y C13 C12 GWE sing 165 n y C13 H13 GWE sing 166 n n C14 C12 GWE sing 167 n n C14 F1 GWE sing 168 n n F2 C14 GWE sing 169 n n F3 C14 GWE sing 170 n n O2 C1 GWE sing 171 n n C15 O2 GWE sing 172 n n C15 C16 GWE sing 173 n n C15 H15 GWE sing 174 n n C15 H15A GWE sing 175 n n C16 N1 GWE sing 176 n n O3 C16 GWE doub 177 n n N1 C17 GWE sing 178 n n N1 HN1 GWE sing 179 n n C17 C18 GWE sing 180 n y C18 C19 GWE doub 181 n y C18 C23 GWE sing 182 n n C19 H19 GWE sing 183 n n C20 C19 GWE sing 184 n y C20 S1 GWE sing 185 n n C21 C20 GWE doub 186 n y C21 H21 GWE sing 187 n n C22 C17 GWE doub 188 n y C22 C21 GWE sing 189 n y C22 H22 GWE sing 190 n n C23 H23 GWE sing 191 n n C23 H23A GWE sing 192 n n C23 H23B GWE sing 193 n n S1 N2 GWE sing 194 n n S1 O5 GWE sing 195 n n N2 HNS GWE sing 196 n n N2 HNSA GWE sing 197 n n O4 S1 GWE sing 198 n n O4 H18 GWE sing 199 n n O5 H191 GWE sing 200 n n # _atom_sites.entry_id 3DM2 _atom_sites.fract_transf_matrix[1][1] 0.007358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 1301 1301 PO4 PO4 . D 4 GWE A 1 999 999 GWE GWE . E 3 PO4 B 1 1300 1300 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GWE . . . D 4 -2.6 -34.217 22.105 1 43.64 ? C1 GWE 999 A 1 HETATM 2 C C2 GWE . . . D 4 -2.38 -34.367 23.599 1 36.54 ? C2 GWE 999 A 1 HETATM 3 C C3 GWE . . . D 4 -1.784 -35.498 24.072 1 37.26 ? C3 GWE 999 A 1 HETATM 4 C C4 GWE . . . D 4 -1.344 -36.585 23.17 1 39.18 ? C4 GWE 999 A 1 HETATM 5 C C5 GWE . . . D 4 -1.53 -36.466 21.831 1 40.85 ? C5 GWE 999 A 1 HETATM 6 C C6 GWE . . . D 4 -2.181 -35.238 21.27 1 45.34 ? C6 GWE 999 A 1 HETATM 7 CL CL1 GWE . . . D 4 -0.623 -38.02 23.869 1 53.4 ? CL1 GWE 999 A 1 HETATM 8 C C7 GWE . . . D 4 -2.828 -33.282 24.515 1 36.87 ? C7 GWE 999 A 1 HETATM 9 O O1 GWE . . . D 4 -3.913 -32.745 24.308 1 27.77 ? O1 GWE 999 A 1 HETATM 10 C C8 GWE . . . D 4 -2.022 -32.791 25.715 1 44.96 ? C8 GWE 999 A 1 HETATM 11 C C9 GWE . . . D 4 -2.718 -32.286 26.852 1 50.7 ? C9 GWE 999 A 1 HETATM 12 C C10 GWE . . . D 4 -2.004 -31.847 27.989 1 55.56 ? C10 GWE 999 A 1 HETATM 13 C C11 GWE . . . D 4 -0.594 -31.915 28.013 1 54.82 ? C11 GWE 999 A 1 HETATM 14 C C12 GWE . . . D 4 0.106 -32.421 26.894 1 52.06 ? C12 GWE 999 A 1 HETATM 15 C C13 GWE . . . D 4 -0.604 -32.851 25.758 1 41.33 ? C13 GWE 999 A 1 HETATM 16 C C14 GWE . . . D 4 1.612 -32.592 26.902 1 65.35 ? C14 GWE 999 A 1 HETATM 17 F F1 GWE . . . D 4 2.199 -32.055 28.011 1 66.24 ? F1 GWE 999 A 1 HETATM 18 F F2 GWE . . . D 4 2.119 -31.994 25.782 1 74.26 ? F2 GWE 999 A 1 HETATM 19 F F3 GWE . . . D 4 1.899 -33.921 26.874 1 77.9 ? F3 GWE 999 A 1 HETATM 20 F F4 GWE . . . D 4 -2.662 -31.395 29.043 1 72.38 ? F4 GWE 999 A 1 HETATM 21 O O2 GWE . . . D 4 -3.227 -33.066 21.673 1 43.26 ? O2 GWE 999 A 1 HETATM 22 C C15 GWE . . . D 4 -3.677 -32.872 20.306 1 41.23 ? C15 GWE 999 A 1 HETATM 23 C C16 GWE . . . D 4 -5.078 -33.43 20.285 1 51.64 ? C16 GWE 999 A 1 HETATM 24 O O3 GWE . . . D 4 -5.449 -33.931 19.234 1 52.97 ? O3 GWE 999 A 1 HETATM 25 N N1 GWE . . . D 4 -5.861 -33.34 21.436 1 59.8 ? N1 GWE 999 A 1 HETATM 26 C C17 GWE . . . D 4 -6.885 -34.18 21.882 1 58.71 ? C17 GWE 999 A 1 HETATM 27 C C18 GWE . . . D 4 -7.621 -33.765 23.154 1 61.17 ? C18 GWE 999 A 1 HETATM 28 C C19 GWE . . . D 4 -8.626 -34.552 23.638 1 56.27 ? C19 GWE 999 A 1 HETATM 29 C C20 GWE . . . D 4 -9.028 -35.822 22.944 1 53.65 ? C20 GWE 999 A 1 HETATM 30 C C21 GWE . . . D 4 -8.376 -36.197 21.81 1 44.97 ? C21 GWE 999 A 1 HETATM 31 C C22 GWE . . . D 4 -7.273 -35.35 21.264 1 47 ? C22 GWE 999 A 1 HETATM 32 C C23 GWE . . . D 4 -7.281 -32.491 23.904 1 58.68 ? C23 GWE 999 A 1 HETATM 33 S S1 GWE . . . D 4 -10.36 -36.815 23.611 1 54.31 ? S1 GWE 999 A 1 HETATM 34 N N2 GWE . . . D 4 -9.804 -38.302 24.003 1 56.96 ? N2 GWE 999 A 1 HETATM 35 O O4 GWE . . . D 4 -10.869 -36.182 24.809 1 49.85 ? O4 GWE 999 A 1 HETATM 36 O O5 GWE . . . D 4 -11.421 -36.971 22.623 1 33.76 ? O5 GWE 999 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 36 #