data_3DM6 # _model_server_result.job_id GWMcvRTgcR5VTZQOAca2qA _model_server_result.datetime_utc '2025-01-22 01:48:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1000}' # _entry.id 3DM6 # _exptl.entry_id 3DM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 881.895 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[[(2S)-2-[[(3R,4S)-5-(3,5-difluorophenoxy)-3-hydroxy-4-[[3-(methyl-methylsulfonyl-amino)-5-[[(1R)-1-phenylethyl]carbamoyl]phenyl]carbonylamino]pentanoyl]amino]-3-methyl-butanoyl]amino]benzene-1,3-dicarboxylic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.5 _cell.angle_gamma 90 _cell.entry_id 3DM6 _cell.length_a 83.435 _cell.length_b 103.017 _cell.length_c 103.11 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 176 A CYS 155 1_555 A SG CYS 380 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 238 A CYS 217 1_555 A SG CYS 403 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 290 A CYS 269 1_555 A SG CYS 340 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 176 B CYS 155 1_555 B SG CYS 380 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 238 B CYS 217 1_555 B SG CYS 403 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 B SG CYS 290 B CYS 269 1_555 B SG CYS 340 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 C SG CYS 176 C CYS 155 1_555 C SG CYS 380 C CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 C SG CYS 238 C CYS 217 1_555 C SG CYS 403 C CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 C SG CYS 290 C CYS 269 1_555 C SG CYS 340 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C42 H45 F2 N5 O12 S' _chem_comp.formula_weight 881.895 _chem_comp.id 757 _chem_comp.mon_nstd_flag . _chem_comp.name '5-[[(2S)-2-[[(3R,4S)-5-(3,5-difluorophenoxy)-3-hydroxy-4-[[3-(methyl-methylsulfonyl-amino)-5-[[(1R)-1-phenylethyl]carbamoyl]phenyl]carbonylamino]pentanoyl]amino]-3-methyl-butanoyl]amino]benzene-1,3-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C10 757 doub 1 n n C10 N8 757 sing 2 n n C10 C12 757 sing 3 n n N8 C7 757 sing 4 n n C7 C6 757 sing 5 n n C7 C9 757 sing 6 n n C6 C5 757 doub 7 n y C6 C1 757 sing 8 n y C5 C4 757 sing 9 n y C4 C3 757 doub 10 n y C3 C2 757 sing 11 n y C2 C1 757 doub 12 n y C12 C13 757 doub 13 n y C12 C17 757 sing 14 n y C13 C14 757 sing 15 n y C14 N21 757 sing 16 n n C14 C15 757 doub 17 n y N21 C22 757 sing 18 n n N21 S23 757 sing 19 n n S23 O26 757 doub 20 n n S23 C24 757 sing 21 n n S23 O25 757 doub 22 n n C15 C16 757 sing 23 n y C17 C16 757 doub 24 n y C16 C18 757 sing 25 n n C18 O19 757 doub 26 n n C18 N29 757 sing 27 n n N29 C30 757 sing 28 n n C30 C31 757 sing 29 n n C30 C41 757 sing 30 n n C31 O32 757 sing 31 n n O32 C33 757 sing 32 n n C33 C34 757 doub 33 n y C33 C38 757 sing 34 n y C34 C35 757 sing 35 n y C35 F40 757 sing 36 n n C35 C36 757 doub 37 n y C36 C37 757 sing 38 n y C37 F39 757 sing 39 n n C37 C38 757 doub 40 n y C41 O42 757 sing 41 n n C41 C43 757 sing 42 n n C43 C44 757 sing 43 n n C44 O45 757 doub 44 n n C44 N46 757 sing 45 n n N46 C47 757 sing 46 n n C47 C48 757 sing 47 n n C47 C51 757 sing 48 n n C48 C49 757 sing 49 n n C48 C50 757 sing 50 n n C51 O52 757 doub 51 n n C51 N53 757 sing 52 n n N53 C54 757 sing 53 n n C54 C59 757 doub 54 n y C54 C55 757 sing 55 n y C59 C58 757 sing 56 n y C58 C63 757 sing 57 n n C58 C57 757 doub 58 n y C63 O64 757 doub 59 n n C63 O65 757 sing 60 n n C55 C56 757 doub 61 n y C56 C57 757 sing 62 n y C56 C60 757 sing 63 n n C60 O62 757 doub 64 n n C60 O61 757 sing 65 n n N8 HN8 757 sing 66 n n C7 H7 757 sing 67 n n C5 H5 757 sing 68 n n C4 H4 757 sing 69 n n C3 H3 757 sing 70 n n C2 H2 757 sing 71 n n C1 H1 757 sing 72 n n C9 H9 757 sing 73 n n C9 H9A 757 sing 74 n n C9 H9B 757 sing 75 n n C13 H13 757 sing 76 n n C22 H22 757 sing 77 n n C22 H22A 757 sing 78 n n C22 H22B 757 sing 79 n n C24 H24 757 sing 80 n n C24 H24A 757 sing 81 n n C24 H24B 757 sing 82 n n C15 H15 757 sing 83 n n C17 H17 757 sing 84 n n N29 HN29 757 sing 85 n n C30 H30 757 sing 86 n n C31 H31 757 sing 87 n n C31 H31A 757 sing 88 n n C34 H34 757 sing 89 n n C36 H36 757 sing 90 n n C38 H38 757 sing 91 n n C41 H41 757 sing 92 n n O42 HO42 757 sing 93 n n C43 H43 757 sing 94 n n C43 H43A 757 sing 95 n n N46 HN46 757 sing 96 n n C47 H47 757 sing 97 n n C48 H48 757 sing 98 n n C49 H49 757 sing 99 n n C49 H49A 757 sing 100 n n C49 H49B 757 sing 101 n n C50 H50 757 sing 102 n n C50 H50A 757 sing 103 n n C50 H50B 757 sing 104 n n N53 HN53 757 sing 105 n n C59 H59 757 sing 106 n n O65 HO65 757 sing 107 n n C55 H55 757 sing 108 n n C57 H57 757 sing 109 n n O61 HO61 757 sing 110 n n # _atom_sites.entry_id 3DM6 _atom_sites.fract_transf_matrix[1][1] 0.011985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002877 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 757 A 1 1000 1000 757 757 . E 3 IPA A 1 1137 1137 IPA IPA . F 2 757 B 1 1000 1000 757 757 . G 3 IPA B 1 1138 1138 IPA IPA . H 2 757 C 1 1000 1000 757 757 . I 3 IPA C 1 1139 1139 IPA IPA . J 4 HOH A 1 1138 4 HOH HOH . J 4 HOH A 2 1139 5 HOH HOH . J 4 HOH A 3 1140 6 HOH HOH . J 4 HOH A 4 1141 7 HOH HOH . J 4 HOH A 5 1142 10 HOH HOH . J 4 HOH A 6 1143 11 HOH HOH . J 4 HOH A 7 1144 16 HOH HOH . J 4 HOH A 8 1145 17 HOH HOH . J 4 HOH A 9 1146 22 HOH HOH . J 4 HOH A 10 1147 28 HOH HOH . J 4 HOH A 11 1148 32 HOH HOH . K 4 HOH B 1 1139 2 HOH HOH . K 4 HOH B 2 1140 3 HOH HOH . K 4 HOH B 3 1141 8 HOH HOH . K 4 HOH B 4 1142 12 HOH HOH . K 4 HOH B 5 1143 14 HOH HOH . K 4 HOH B 6 1144 18 HOH HOH . K 4 HOH B 7 1145 20 HOH HOH . K 4 HOH B 8 1146 21 HOH HOH . K 4 HOH B 9 1147 23 HOH HOH . K 4 HOH B 10 1148 24 HOH HOH . K 4 HOH B 11 1149 29 HOH HOH . K 4 HOH B 12 1150 30 HOH HOH . L 4 HOH C 1 1140 1 HOH HOH . L 4 HOH C 2 1141 9 HOH HOH . L 4 HOH C 3 1142 13 HOH HOH . L 4 HOH C 4 1143 15 HOH HOH . L 4 HOH C 5 1144 19 HOH HOH . L 4 HOH C 6 1145 25 HOH HOH . L 4 HOH C 7 1146 26 HOH HOH . L 4 HOH C 8 1147 27 HOH HOH . L 4 HOH C 9 1148 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 757 . . . D 2 2.507 17.716 30.208 1 49.45 ? O11 757 1000 A 1 HETATM 2 C C10 757 . . . D 2 1.637 17.253 30.956 1 45.77 ? C10 757 1000 A 1 HETATM 3 N N8 757 . . . D 2 0.368 17.618 30.788 1 43.05 ? N8 757 1000 A 1 HETATM 4 C C7 757 . . . D 2 -0.085 18.422 29.677 1 42 ? C7 757 1000 A 1 HETATM 5 C C6 757 . . . D 2 -0.508 17.506 28.566 1 44.26 ? C6 757 1000 A 1 HETATM 6 C C5 757 . . . D 2 -1.559 16.591 28.717 1 42.98 ? C5 757 1000 A 1 HETATM 7 C C4 757 . . . D 2 -1.948 15.749 27.666 1 44.38 ? C4 757 1000 A 1 HETATM 8 C C3 757 . . . D 2 -1.26 15.792 26.443 1 45.71 ? C3 757 1000 A 1 HETATM 9 C C2 757 . . . D 2 -0.194 16.692 26.281 1 46.27 ? C2 757 1000 A 1 HETATM 10 C C1 757 . . . D 2 0.175 17.542 27.332 1 45.34 ? C1 757 1000 A 1 HETATM 11 C C9 757 . . . D 2 -1.202 19.342 30.149 1 38.66 ? C9 757 1000 A 1 HETATM 12 C C12 757 . . . D 2 2.032 16.319 32.075 1 45.33 ? C12 757 1000 A 1 HETATM 13 C C13 757 . . . D 2 3.233 15.589 32.018 1 46.86 ? C13 757 1000 A 1 HETATM 14 C C14 757 . . . D 2 3.614 14.724 33.04 1 43.82 ? C14 757 1000 A 1 HETATM 15 N N21 757 . . . D 2 4.828 14.003 32.971 1 44.86 ? N21 757 1000 A 1 HETATM 16 C C22 757 . . . D 2 5.517 13.723 34.222 1 42.08 ? C22 757 1000 A 1 HETATM 17 S S23 757 . . . D 2 5.528 13.52 31.677 1 47.09 ? S23 757 1000 A 1 HETATM 18 O O26 757 . . . D 2 4.605 13.376 30.55 1 41.35 ? O26 757 1000 A 1 HETATM 19 C C24 757 . . . D 2 6.702 14.635 31.264 1 43.77 ? C24 757 1000 A 1 HETATM 20 O O25 757 . . . D 2 6.209 12.274 31.97 1 41.27 ? O25 757 1000 A 1 HETATM 21 C C15 757 . . . D 2 2.783 14.622 34.157 1 43.98 ? C15 757 1000 A 1 HETATM 22 C C17 757 . . . D 2 1.229 16.188 33.191 1 44.77 ? C17 757 1000 A 1 HETATM 23 C C16 757 . . . D 2 1.587 15.335 34.236 1 46.34 ? C16 757 1000 A 1 HETATM 24 C C18 757 . . . D 2 0.647 15.296 35.429 1 47.97 ? C18 757 1000 A 1 HETATM 25 O O19 757 . . . D 2 1.117 15.335 36.557 1 51.05 ? O19 757 1000 A 1 HETATM 26 N N29 757 . . . D 2 -0.669 15.286 35.202 1 51.15 ? N29 757 1000 A 1 HETATM 27 C C30 757 . . . D 2 -1.734 15.341 36.183 1 52.6 ? C30 757 1000 A 1 HETATM 28 C C31 757 . . . D 2 -2.745 16.392 35.703 1 55.98 ? C31 757 1000 A 1 HETATM 29 O O32 757 . . . D 2 -2.289 17.296 34.683 1 62.09 ? O32 757 1000 A 1 HETATM 30 C C33 757 . . . D 2 -1.456 18.386 34.869 1 63.2 ? C33 757 1000 A 1 HETATM 31 C C34 757 . . . D 2 -0.908 18.645 36.117 1 64.75 ? C34 757 1000 A 1 HETATM 32 C C35 757 . . . D 2 -0.054 19.722 36.325 1 64.42 ? C35 757 1000 A 1 HETATM 33 F F40 757 . . . D 2 0.433 19.917 37.552 1 64.6 ? F40 757 1000 A 1 HETATM 34 C C36 757 . . . D 2 0.273 20.587 35.294 1 63.59 ? C36 757 1000 A 1 HETATM 35 C C37 757 . . . D 2 -0.263 20.347 34.038 1 64.69 ? C37 757 1000 A 1 HETATM 36 F F39 757 . . . D 2 0.075 21.195 33.04 1 65.85 ? F39 757 1000 A 1 HETATM 37 C C38 757 . . . D 2 -1.128 19.258 33.822 1 63.64 ? C38 757 1000 A 1 HETATM 38 C C41 757 . . . D 2 -2.527 14.072 36.414 1 51.14 ? C41 757 1000 A 1 HETATM 39 O O42 757 . . . D 2 -2.859 13.578 35.113 1 48.73 ? O42 757 1000 A 1 HETATM 40 C C43 757 . . . D 2 -1.782 13.056 37.306 1 52.38 ? C43 757 1000 A 1 HETATM 41 C C44 757 . . . D 2 -1.669 13.481 38.779 1 54.23 ? C44 757 1000 A 1 HETATM 42 O O45 757 . . . D 2 -0.695 14.14 39.113 1 54.01 ? O45 757 1000 A 1 HETATM 43 N N46 757 . . . D 2 -2.578 13.171 39.735 1 54.68 ? N46 757 1000 A 1 HETATM 44 C C47 757 . . . D 2 -2.368 13.585 41.132 1 55.92 ? C47 757 1000 A 1 HETATM 45 C C48 757 . . . D 2 -3.466 13.31 42.169 1 56.31 ? C48 757 1000 A 1 HETATM 46 C C49 757 . . . D 2 -3.666 14.551 43.045 1 54.01 ? C49 757 1000 A 1 HETATM 47 C C50 757 . . . D 2 -4.775 12.815 41.6 1 55.91 ? C50 757 1000 A 1 HETATM 48 C C51 757 . . . D 2 -1.216 12.866 41.778 1 57.11 ? C51 757 1000 A 1 HETATM 49 O O52 757 . . . D 2 -1.047 11.673 41.584 1 57.19 ? O52 757 1000 A 1 HETATM 50 N N53 757 . . . D 2 -0.434 13.553 42.62 1 59.29 ? N53 757 1000 A 1 HETATM 51 C C54 757 . . . D 2 0.605 12.977 43.227 0.6 58.75 ? C54 757 1000 A 1 HETATM 52 C C59 757 . . . D 2 1.849 13.056 42.632 0.6 60 ? C59 757 1000 A 1 HETATM 53 C C58 757 . . . D 2 2.964 12.468 43.214 0.6 59.6 ? C58 757 1000 A 1 HETATM 54 C C63 757 . . . D 2 4.274 12.614 42.479 0.6 58.67 ? C63 757 1000 A 1 HETATM 55 O O64 757 . . . D 2 4.342 12.255 41.278 0.6 55.19 ? O64 757 1000 A 1 HETATM 56 O O65 757 . . . D 2 5.271 13.125 43.046 0.6 57.39 ? O65 757 1000 A 1 HETATM 57 C C55 757 . . . D 2 0.434 12.309 44.413 0.6 59.23 ? C55 757 1000 A 1 HETATM 58 C C56 757 . . . D 2 1.53 11.718 45.007 0.6 60.4 ? C56 757 1000 A 1 HETATM 59 C C57 757 . . . D 2 2.805 11.783 44.428 0.6 60.08 ? C57 757 1000 A 1 HETATM 60 C C60 757 . . . D 2 1.254 11.008 46.286 0.6 60.72 ? C60 757 1000 A 1 HETATM 61 O O62 757 . . . D 2 0.9 11.681 47.285 0.6 62.55 ? O62 757 1000 A 1 HETATM 62 O O61 757 . . . D 2 1.35 9.756 46.314 0.6 61.16 ? O61 757 1000 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 62 #