data_3DM6 # _model_server_result.job_id NbLE4FGxusA-eQiRSnWvWw _model_server_result.datetime_utc '2025-01-22 01:55:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1139}' # _entry.id 3DM6 # _exptl.entry_id 3DM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.095 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOPROPYL ALCOHOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.5 _cell.angle_gamma 90 _cell.entry_id 3DM6 _cell.length_a 83.435 _cell.length_b 103.017 _cell.length_c 103.11 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 176 A CYS 155 1_555 A SG CYS 380 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 238 A CYS 217 1_555 A SG CYS 403 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 290 A CYS 269 1_555 A SG CYS 340 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 176 B CYS 155 1_555 B SG CYS 380 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 238 B CYS 217 1_555 B SG CYS 403 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 B SG CYS 290 B CYS 269 1_555 B SG CYS 340 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 C SG CYS 176 C CYS 155 1_555 C SG CYS 380 C CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 C SG CYS 238 C CYS 217 1_555 C SG CYS 403 C CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 C SG CYS 290 C CYS 269 1_555 C SG CYS 340 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C3 H8 O' _chem_comp.formula_weight 60.095 _chem_comp.id IPA _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOPROPYL ALCOHOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-PROPANOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPA sing 283 n n C1 H11 IPA sing 284 n n C1 H12 IPA sing 285 n n C1 H13 IPA sing 286 n n C2 C3 IPA sing 287 n n C2 O2 IPA sing 288 n n C2 H2 IPA sing 289 n n C3 H31 IPA sing 290 n n C3 H32 IPA sing 291 n n C3 H33 IPA sing 292 n n O2 HO2 IPA sing 293 n n # _atom_sites.entry_id 3DM6 _atom_sites.fract_transf_matrix[1][1] 0.011985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002877 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 757 A 1 1000 1000 757 757 . E 3 IPA A 1 1137 1137 IPA IPA . F 2 757 B 1 1000 1000 757 757 . G 3 IPA B 1 1138 1138 IPA IPA . H 2 757 C 1 1000 1000 757 757 . I 3 IPA C 1 1139 1139 IPA IPA . J 4 HOH A 1 1138 4 HOH HOH . J 4 HOH A 2 1139 5 HOH HOH . J 4 HOH A 3 1140 6 HOH HOH . J 4 HOH A 4 1141 7 HOH HOH . J 4 HOH A 5 1142 10 HOH HOH . J 4 HOH A 6 1143 11 HOH HOH . J 4 HOH A 7 1144 16 HOH HOH . J 4 HOH A 8 1145 17 HOH HOH . J 4 HOH A 9 1146 22 HOH HOH . J 4 HOH A 10 1147 28 HOH HOH . J 4 HOH A 11 1148 32 HOH HOH . K 4 HOH B 1 1139 2 HOH HOH . K 4 HOH B 2 1140 3 HOH HOH . K 4 HOH B 3 1141 8 HOH HOH . K 4 HOH B 4 1142 12 HOH HOH . K 4 HOH B 5 1143 14 HOH HOH . K 4 HOH B 6 1144 18 HOH HOH . K 4 HOH B 7 1145 20 HOH HOH . K 4 HOH B 8 1146 21 HOH HOH . K 4 HOH B 9 1147 23 HOH HOH . K 4 HOH B 10 1148 24 HOH HOH . K 4 HOH B 11 1149 29 HOH HOH . K 4 HOH B 12 1150 30 HOH HOH . L 4 HOH C 1 1140 1 HOH HOH . L 4 HOH C 2 1141 9 HOH HOH . L 4 HOH C 3 1142 13 HOH HOH . L 4 HOH C 4 1143 15 HOH HOH . L 4 HOH C 5 1144 19 HOH HOH . L 4 HOH C 6 1145 25 HOH HOH . L 4 HOH C 7 1146 26 HOH HOH . L 4 HOH C 8 1147 27 HOH HOH . L 4 HOH C 9 1148 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPA . . . I 3 -12.023 20.427 1.293 1 63.99 ? C1 IPA 1139 C 1 HETATM 2 C C2 IPA . . . I 3 -11.405 21.572 2.076 1 62.93 ? C2 IPA 1139 C 1 HETATM 3 C C3 IPA . . . I 3 -11.095 21.037 3.46 1 62.61 ? C3 IPA 1139 C 1 HETATM 4 O O2 IPA . . . I 3 -12.437 22.518 2.147 1 66.07 ? O2 IPA 1139 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 4 #