data_3DM8 # _model_server_result.job_id TReiEmMwaBAuYU98B87jyA _model_server_result.datetime_utc '2025-01-02 22:28:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dm8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":144}' # _entry.id 3DM8 # _exptl.entry_id 3DM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.807 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECYL NONA ETHYLENE GLYCOL ETHER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DM8 _cell.length_a 40.593 _cell.length_b 84.071 _cell.length_c 97.211 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 84.071 97.211 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H62 O10' _chem_comp.formula_weight 582.807 _chem_comp.id CE9 _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECYL NONA ETHYLENE GLYCOL ETHER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POLYDOCANOL;THESIT # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CE9 sing 70 n n C1 H11 CE9 sing 71 n n C1 H12 CE9 sing 72 n n C1 H13 CE9 sing 73 n n C2 C3 CE9 sing 74 n n C2 H21 CE9 sing 75 n n C2 H22 CE9 sing 76 n n C3 C4 CE9 sing 77 n n C3 H31 CE9 sing 78 n n C3 H32 CE9 sing 79 n n C4 C5 CE9 sing 80 n n C4 H41 CE9 sing 81 n n C4 H42 CE9 sing 82 n n C5 C6 CE9 sing 83 n n C5 H51 CE9 sing 84 n n C5 H52 CE9 sing 85 n n C6 C7 CE9 sing 86 n n C6 H61 CE9 sing 87 n n C6 H62 CE9 sing 88 n n C7 C8 CE9 sing 89 n n C7 H71 CE9 sing 90 n n C7 H72 CE9 sing 91 n n C8 C9 CE9 sing 92 n n C8 H81 CE9 sing 93 n n C8 H82 CE9 sing 94 n n C9 C10 CE9 sing 95 n n C9 H91 CE9 sing 96 n n C9 H92 CE9 sing 97 n n C10 C11 CE9 sing 98 n n C10 H101 CE9 sing 99 n n C10 H102 CE9 sing 100 n n C11 C12 CE9 sing 101 n n C11 H111 CE9 sing 102 n n C11 H112 CE9 sing 103 n n C12 O13 CE9 sing 104 n n C12 H121 CE9 sing 105 n n C12 H122 CE9 sing 106 n n O13 C14 CE9 sing 107 n n C14 C15 CE9 sing 108 n n C14 H141 CE9 sing 109 n n C14 H142 CE9 sing 110 n n C15 O16 CE9 sing 111 n n C15 H151 CE9 sing 112 n n C15 H152 CE9 sing 113 n n O16 C17 CE9 sing 114 n n C17 C18 CE9 sing 115 n n C17 H171 CE9 sing 116 n n C17 H172 CE9 sing 117 n n C18 O19 CE9 sing 118 n n C18 H181 CE9 sing 119 n n C18 H182 CE9 sing 120 n n O19 C20 CE9 sing 121 n n C20 C21 CE9 sing 122 n n C20 H201 CE9 sing 123 n n C20 H202 CE9 sing 124 n n C21 O22 CE9 sing 125 n n C21 H211 CE9 sing 126 n n C21 H212 CE9 sing 127 n n O22 C23 CE9 sing 128 n n C23 C24 CE9 sing 129 n n C23 H231 CE9 sing 130 n n C23 H232 CE9 sing 131 n n C24 O25 CE9 sing 132 n n C24 H241 CE9 sing 133 n n C24 H242 CE9 sing 134 n n O25 C26 CE9 sing 135 n n C26 C27 CE9 sing 136 n n C26 H261 CE9 sing 137 n n C26 H262 CE9 sing 138 n n C27 O28 CE9 sing 139 n n C27 H271 CE9 sing 140 n n C27 H272 CE9 sing 141 n n O28 C29 CE9 sing 142 n n C29 C30 CE9 sing 143 n n C29 H291 CE9 sing 144 n n C29 H292 CE9 sing 145 n n C30 O31 CE9 sing 146 n n C30 H301 CE9 sing 147 n n C30 H302 CE9 sing 148 n n O31 C32 CE9 sing 149 n n C32 C33 CE9 sing 150 n n C32 H321 CE9 sing 151 n n C32 H322 CE9 sing 152 n n C33 O34 CE9 sing 153 n n C33 H331 CE9 sing 154 n n C33 H332 CE9 sing 155 n n O34 C35 CE9 sing 156 n n C35 C36 CE9 sing 157 n n C35 H351 CE9 sing 158 n n C35 H352 CE9 sing 159 n n C36 O37 CE9 sing 160 n n C36 H361 CE9 sing 161 n n C36 H362 CE9 sing 162 n n O37 C38 CE9 sing 163 n n C38 C39 CE9 sing 164 n n C38 H381 CE9 sing 165 n n C38 H382 CE9 sing 166 n n C39 OXT CE9 sing 167 n n C39 H391 CE9 sing 168 n n C39 H392 CE9 sing 169 n n OXT HXT CE9 sing 170 n n # _atom_sites.entry_id 3DM8 _atom_sites.fract_transf_matrix[1][1] 0.02464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CE9 A 1 144 1 CE9 CE9 . C 3 HOH A 1 145 2 HOH HOH . C 3 HOH A 2 146 3 HOH HOH . C 3 HOH A 3 147 4 HOH HOH . C 3 HOH A 4 148 5 HOH HOH . C 3 HOH A 5 149 7 HOH HOH . C 3 HOH A 6 150 8 HOH HOH . C 3 HOH A 7 151 9 HOH HOH . C 3 HOH A 8 152 10 HOH HOH . C 3 HOH A 9 153 11 HOH HOH . C 3 HOH A 10 154 12 HOH HOH . C 3 HOH A 11 155 13 HOH HOH . C 3 HOH A 12 156 14 HOH HOH . C 3 HOH A 13 157 15 HOH HOH . C 3 HOH A 14 158 16 HOH HOH . C 3 HOH A 15 159 17 HOH HOH . C 3 HOH A 16 160 18 HOH HOH . C 3 HOH A 17 161 20 HOH HOH . C 3 HOH A 18 162 21 HOH HOH . C 3 HOH A 19 163 22 HOH HOH . C 3 HOH A 20 164 23 HOH HOH . C 3 HOH A 21 165 24 HOH HOH . C 3 HOH A 22 166 25 HOH HOH . C 3 HOH A 23 167 27 HOH HOH . C 3 HOH A 24 168 28 HOH HOH . C 3 HOH A 25 169 29 HOH HOH . C 3 HOH A 26 170 31 HOH HOH . C 3 HOH A 27 171 33 HOH HOH . C 3 HOH A 28 172 34 HOH HOH . C 3 HOH A 29 173 35 HOH HOH . C 3 HOH A 30 174 37 HOH HOH . C 3 HOH A 31 175 38 HOH HOH . C 3 HOH A 32 176 39 HOH HOH . C 3 HOH A 33 177 40 HOH HOH . C 3 HOH A 34 178 41 HOH HOH . C 3 HOH A 35 179 42 HOH HOH . C 3 HOH A 36 180 43 HOH HOH . C 3 HOH A 37 181 44 HOH HOH . C 3 HOH A 38 182 45 HOH HOH . C 3 HOH A 39 183 46 HOH HOH . C 3 HOH A 40 184 47 HOH HOH . C 3 HOH A 41 185 48 HOH HOH . C 3 HOH A 42 186 51 HOH HOH . C 3 HOH A 43 187 52 HOH HOH . C 3 HOH A 44 188 54 HOH HOH . C 3 HOH A 45 189 55 HOH HOH . C 3 HOH A 46 190 56 HOH HOH . C 3 HOH A 47 191 57 HOH HOH . C 3 HOH A 48 192 58 HOH HOH . C 3 HOH A 49 193 61 HOH HOH . C 3 HOH A 50 194 62 HOH HOH . C 3 HOH A 51 195 63 HOH HOH . C 3 HOH A 52 196 64 HOH HOH . C 3 HOH A 53 197 65 HOH HOH . C 3 HOH A 54 198 67 HOH HOH . C 3 HOH A 55 199 68 HOH HOH . C 3 HOH A 56 200 69 HOH HOH . C 3 HOH A 57 201 70 HOH HOH . C 3 HOH A 58 202 71 HOH HOH . C 3 HOH A 59 203 72 HOH HOH . C 3 HOH A 60 204 74 HOH HOH . C 3 HOH A 61 205 75 HOH HOH . C 3 HOH A 62 206 76 HOH HOH . C 3 HOH A 63 207 77 HOH HOH . C 3 HOH A 64 208 78 HOH HOH . C 3 HOH A 65 209 79 HOH HOH . C 3 HOH A 66 210 80 HOH HOH . C 3 HOH A 67 211 81 HOH HOH . C 3 HOH A 68 212 82 HOH HOH . C 3 HOH A 69 213 83 HOH HOH . C 3 HOH A 70 214 84 HOH HOH . C 3 HOH A 71 215 85 HOH HOH . C 3 HOH A 72 216 86 HOH HOH . C 3 HOH A 73 217 87 HOH HOH . C 3 HOH A 74 218 88 HOH HOH . C 3 HOH A 75 219 91 HOH HOH . C 3 HOH A 76 220 93 HOH HOH . C 3 HOH A 77 221 94 HOH HOH . C 3 HOH A 78 222 98 HOH HOH . C 3 HOH A 79 223 99 HOH HOH . C 3 HOH A 80 224 100 HOH HOH . C 3 HOH A 81 225 101 HOH HOH . C 3 HOH A 82 226 103 HOH HOH . C 3 HOH A 83 227 104 HOH HOH . C 3 HOH A 84 228 106 HOH HOH . C 3 HOH A 85 229 107 HOH HOH . C 3 HOH A 86 230 111 HOH HOH . C 3 HOH A 87 231 112 HOH HOH . C 3 HOH A 88 232 114 HOH HOH . C 3 HOH A 89 233 115 HOH HOH . C 3 HOH A 90 234 116 HOH HOH . C 3 HOH A 91 235 117 HOH HOH . C 3 HOH A 92 236 118 HOH HOH . C 3 HOH A 93 237 119 HOH HOH . C 3 HOH A 94 238 120 HOH HOH . C 3 HOH A 95 239 121 HOH HOH . C 3 HOH A 96 240 122 HOH HOH . C 3 HOH A 97 241 123 HOH HOH . C 3 HOH A 98 242 124 HOH HOH . C 3 HOH A 99 243 125 HOH HOH . C 3 HOH A 100 244 129 HOH HOH . C 3 HOH A 101 245 131 HOH HOH . C 3 HOH A 102 246 133 HOH HOH . C 3 HOH A 103 247 135 HOH HOH . C 3 HOH A 104 248 136 HOH HOH . C 3 HOH A 105 249 137 HOH HOH . C 3 HOH A 106 250 138 HOH HOH . C 3 HOH A 107 251 139 HOH HOH . C 3 HOH A 108 252 140 HOH HOH . C 3 HOH A 109 253 141 HOH HOH . C 3 HOH A 110 254 142 HOH HOH . C 3 HOH A 111 255 143 HOH HOH . C 3 HOH A 112 256 144 HOH HOH . C 3 HOH A 113 257 146 HOH HOH . C 3 HOH A 114 258 147 HOH HOH . C 3 HOH A 115 259 149 HOH HOH . C 3 HOH A 116 260 150 HOH HOH . C 3 HOH A 117 261 151 HOH HOH . C 3 HOH A 118 262 152 HOH HOH . C 3 HOH A 119 263 153 HOH HOH . C 3 HOH A 120 264 154 HOH HOH . C 3 HOH A 121 265 155 HOH HOH . C 3 HOH A 122 266 156 HOH HOH . C 3 HOH A 123 267 157 HOH HOH . C 3 HOH A 124 268 158 HOH HOH . C 3 HOH A 125 269 159 HOH HOH . C 3 HOH A 126 270 160 HOH HOH . C 3 HOH A 127 271 161 HOH HOH . C 3 HOH A 128 272 162 HOH HOH . C 3 HOH A 129 273 163 HOH HOH . C 3 HOH A 130 274 164 HOH HOH . C 3 HOH A 131 275 165 HOH HOH . C 3 HOH A 132 276 166 HOH HOH . C 3 HOH A 133 277 167 HOH HOH . C 3 HOH A 134 278 168 HOH HOH . C 3 HOH A 135 279 169 HOH HOH . C 3 HOH A 136 280 170 HOH HOH . C 3 HOH A 137 281 171 HOH HOH . C 3 HOH A 138 282 172 HOH HOH . C 3 HOH A 139 283 173 HOH HOH . C 3 HOH A 140 284 174 HOH HOH . C 3 HOH A 141 285 175 HOH HOH . C 3 HOH A 142 286 176 HOH HOH . C 3 HOH A 143 287 177 HOH HOH . C 3 HOH A 144 288 178 HOH HOH . C 3 HOH A 145 289 179 HOH HOH . C 3 HOH A 146 290 180 HOH HOH . C 3 HOH A 147 291 181 HOH HOH . C 3 HOH A 148 292 182 HOH HOH . C 3 HOH A 149 293 183 HOH HOH . C 3 HOH A 150 294 184 HOH HOH . C 3 HOH A 151 295 185 HOH HOH . C 3 HOH A 152 296 186 HOH HOH . C 3 HOH A 153 297 187 HOH HOH . C 3 HOH A 154 298 188 HOH HOH . C 3 HOH A 155 299 189 HOH HOH . C 3 HOH A 156 300 190 HOH HOH . C 3 HOH A 157 301 191 HOH HOH . C 3 HOH A 158 302 192 HOH HOH . C 3 HOH A 159 303 194 HOH HOH . C 3 HOH A 160 304 195 HOH HOH . C 3 HOH A 161 305 196 HOH HOH . C 3 HOH A 162 306 197 HOH HOH . C 3 HOH A 163 307 199 HOH HOH . C 3 HOH A 164 308 200 HOH HOH . C 3 HOH A 165 309 201 HOH HOH . C 3 HOH A 166 310 202 HOH HOH . C 3 HOH A 167 311 203 HOH HOH . C 3 HOH A 168 312 204 HOH HOH . C 3 HOH A 169 313 205 HOH HOH . C 3 HOH A 170 314 206 HOH HOH . C 3 HOH A 171 315 207 HOH HOH . C 3 HOH A 172 316 208 HOH HOH . C 3 HOH A 173 317 209 HOH HOH . C 3 HOH A 174 318 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C29 CE9 . . . B 2 3.089 48.496 27.181 1 52.09 ? C29 CE9 144 A 1 HETATM 2 C C30 CE9 . . . B 2 3.203 47.344 28.178 1 52.34 ? C30 CE9 144 A 1 HETATM 3 O O31 CE9 . . . B 2 1.894 46.877 28.498 1 52.63 ? O31 CE9 144 A 1 HETATM 4 C C32 CE9 . . . B 2 1.887 45.792 29.419 1 50.5 ? C32 CE9 144 A 1 HETATM 5 C C33 CE9 . . . B 2 0.445 45.44 29.73 1 50.36 ? C33 CE9 144 A 1 HETATM 6 O O34 CE9 . . . B 2 -0.177 44.992 28.534 1 49.24 ? O34 CE9 144 A 1 HETATM 7 C C35 CE9 . . . B 2 -1.43 45.626 28.335 1 51.26 ? C35 CE9 144 A 1 HETATM 8 C C36 CE9 . . . B 2 -2.336 44.708 27.543 1 51.68 ? C36 CE9 144 A 1 HETATM 9 O O37 CE9 . . . B 2 -2.286 45.113 26.181 1 52.89 ? O37 CE9 144 A 1 HETATM 10 C C38 CE9 . . . B 2 -2.847 46.403 25.985 1 54.4 ? C38 CE9 144 A 1 HETATM 11 C C39 CE9 . . . B 2 -1.886 47.252 25.17 1 54.87 ? C39 CE9 144 A 1 HETATM 12 O OXT CE9 . . . B 2 -2.624 47.814 24.081 1 55.49 ? OXT CE9 144 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 12 #