data_3DN4
#
_model_server_result.job_id            Cy2bbm9E5X_zsK-9yFmobw 
_model_server_result.datetime_utc      '2024-11-28 18:01:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dn4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":904}' 
#
_entry.id    3DN4 
#
_exptl.entry_id    3DN4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-HYDROXYETHYL DISULFIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DN4 
_cell.length_a            59.982 
_cell.length_b            59.982 
_cell.length_c            95.991 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DN4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                HED 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-HYDROXYETHYL DISULFIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 HED sing 129 n n 
C1 C2 HED sing 130 n n 
C1 H11 HED sing 131 n n 
C1 H12 HED sing 132 n n 
O1 HO1 HED sing 133 n n 
C2 S3 HED sing 134 n n 
C2 H21 HED sing 135 n n 
C2 H22 HED sing 136 n n 
S3 S4 HED sing 137 n n 
S4 C5 HED sing 138 n n 
C5 C6 HED sing 139 n n 
C5 H51 HED sing 140 n n 
C5 H52 HED sing 141 n n 
C6 O6 HED sing 142 n n 
C6 H61 HED sing 143 n n 
C6 H62 HED sing 144 n n 
O6 HO6 HED sing 145 n n 
#
_atom_sites.entry_id                     3DN4 
_atom_sites.fract_transf_matrix[1][1]    0.016672 
_atom_sites.fract_transf_matrix[1][2]    0.009625 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019251 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 901 901 PO4 PO4 . 
C 2 PO4 A 1 902 902 PO4 PO4 . 
D 3 PIH A 1 900 900 PIH I1B . 
E 4 HED A 1 903 903 HED HED . 
F 4 HED A 1 904 904 HED HED . 
G 4 HED A 1 905 905 HED HED . 
H 5 HOH A 1 906 1 HOH HOH . 
H 5 HOH A 2 907 2 HOH HOH . 
H 5 HOH A 3 908 3 HOH HOH . 
H 5 HOH A 4 909 4 HOH HOH . 
H 5 HOH A 5 910 5 HOH HOH . 
H 5 HOH A 6 911 6 HOH HOH . 
H 5 HOH A 7 912 7 HOH HOH . 
H 5 HOH A 8 913 8 HOH HOH . 
H 5 HOH A 9 914 9 HOH HOH . 
H 5 HOH A 10 915 10 HOH HOH . 
H 5 HOH A 11 916 11 HOH HOH . 
H 5 HOH A 12 917 12 HOH HOH . 
H 5 HOH A 13 918 13 HOH HOH . 
H 5 HOH A 14 919 14 HOH HOH . 
H 5 HOH A 15 920 15 HOH HOH . 
H 5 HOH A 16 921 16 HOH HOH . 
H 5 HOH A 17 922 17 HOH HOH . 
H 5 HOH A 18 923 18 HOH HOH . 
H 5 HOH A 19 924 19 HOH HOH . 
H 5 HOH A 20 925 20 HOH HOH . 
H 5 HOH A 21 926 21 HOH HOH . 
H 5 HOH A 22 927 22 HOH HOH . 
H 5 HOH A 23 928 23 HOH HOH . 
H 5 HOH A 24 929 24 HOH HOH . 
H 5 HOH A 25 930 25 HOH HOH . 
H 5 HOH A 26 931 26 HOH HOH . 
H 5 HOH A 27 932 27 HOH HOH . 
H 5 HOH A 28 933 28 HOH HOH . 
H 5 HOH A 29 934 29 HOH HOH . 
H 5 HOH A 30 935 30 HOH HOH . 
H 5 HOH A 31 936 31 HOH HOH . 
H 5 HOH A 32 937 32 HOH HOH . 
H 5 HOH A 33 938 33 HOH HOH . 
H 5 HOH A 34 939 34 HOH HOH . 
H 5 HOH A 35 940 35 HOH HOH . 
H 5 HOH A 36 941 36 HOH HOH . 
H 5 HOH A 37 942 37 HOH HOH . 
H 5 HOH A 38 943 38 HOH HOH . 
H 5 HOH A 39 944 39 HOH HOH . 
H 5 HOH A 40 945 40 HOH HOH . 
H 5 HOH A 41 946 41 HOH HOH . 
H 5 HOH A 42 947 42 HOH HOH . 
H 5 HOH A 43 948 43 HOH HOH . 
H 5 HOH A 44 949 44 HOH HOH . 
H 5 HOH A 45 950 45 HOH HOH . 
H 5 HOH A 46 951 46 HOH HOH . 
H 5 HOH A 47 952 47 HOH HOH . 
H 5 HOH A 48 953 48 HOH HOH . 
H 5 HOH A 49 954 49 HOH HOH . 
H 5 HOH A 50 955 50 HOH HOH . 
H 5 HOH A 51 956 51 HOH HOH . 
H 5 HOH A 52 957 52 HOH HOH . 
H 5 HOH A 53 958 53 HOH HOH . 
H 5 HOH A 54 959 54 HOH HOH . 
H 5 HOH A 55 960 55 HOH HOH . 
H 5 HOH A 56 961 56 HOH HOH . 
H 5 HOH A 57 962 57 HOH HOH . 
H 5 HOH A 58 963 58 HOH HOH . 
H 5 HOH A 59 964 59 HOH HOH . 
H 5 HOH A 60 965 60 HOH HOH . 
H 5 HOH A 61 966 61 HOH HOH . 
H 5 HOH A 62 967 62 HOH HOH . 
H 5 HOH A 63 968 63 HOH HOH . 
H 5 HOH A 64 969 64 HOH HOH . 
H 5 HOH A 65 970 65 HOH HOH . 
H 5 HOH A 66 971 66 HOH HOH . 
H 5 HOH A 67 972 67 HOH HOH . 
H 5 HOH A 68 973 68 HOH HOH . 
H 5 HOH A 69 974 69 HOH HOH . 
H 5 HOH A 70 975 70 HOH HOH . 
H 5 HOH A 71 976 71 HOH HOH . 
H 5 HOH A 72 977 72 HOH HOH . 
H 5 HOH A 73 978 73 HOH HOH . 
H 5 HOH A 74 979 74 HOH HOH . 
H 5 HOH A 75 980 75 HOH HOH . 
H 5 HOH A 76 981 76 HOH HOH . 
H 5 HOH A 77 982 77 HOH HOH . 
H 5 HOH A 78 983 78 HOH HOH . 
H 5 HOH A 79 984 79 HOH HOH . 
H 5 HOH A 80 985 80 HOH HOH . 
H 5 HOH A 81 986 81 HOH HOH . 
H 5 HOH A 82 987 82 HOH HOH . 
H 5 HOH A 83 988 83 HOH HOH . 
H 5 HOH A 84 989 84 HOH HOH . 
H 5 HOH A 85 990 85 HOH HOH . 
H 5 HOH A 86 991 86 HOH HOH . 
H 5 HOH A 87 992 87 HOH HOH . 
H 5 HOH A 88 993 88 HOH HOH . 
H 5 HOH A 89 994 89 HOH HOH . 
H 5 HOH A 90 995 90 HOH HOH . 
H 5 HOH A 91 996 91 HOH HOH . 
H 5 HOH A 92 997 92 HOH HOH . 
H 5 HOH A 93 998 93 HOH HOH . 
H 5 HOH A 94 999 94 HOH HOH . 
H 5 HOH A 95 1000 95 HOH HOH . 
H 5 HOH A 96 1001 96 HOH HOH . 
H 5 HOH A 97 1002 97 HOH HOH . 
H 5 HOH A 98 1003 98 HOH HOH . 
H 5 HOH A 99 1004 99 HOH HOH . 
H 5 HOH A 100 1005 100 HOH HOH . 
H 5 HOH A 101 1006 101 HOH HOH . 
H 5 HOH A 102 1007 102 HOH HOH . 
H 5 HOH A 103 1008 103 HOH HOH . 
H 5 HOH A 104 1009 104 HOH HOH . 
H 5 HOH A 105 1010 105 HOH HOH . 
H 5 HOH A 106 1011 106 HOH HOH . 
H 5 HOH A 107 1012 107 HOH HOH . 
H 5 HOH A 108 1013 108 HOH HOH . 
H 5 HOH A 109 1014 109 HOH HOH . 
H 5 HOH A 110 1015 110 HOH HOH . 
H 5 HOH A 111 1016 111 HOH HOH . 
H 5 HOH A 112 1017 112 HOH HOH . 
H 5 HOH A 113 1018 113 HOH HOH . 
H 5 HOH A 114 1019 114 HOH HOH . 
H 5 HOH A 115 1020 115 HOH HOH . 
H 5 HOH A 116 1021 116 HOH HOH . 
H 5 HOH A 117 1022 117 HOH HOH . 
H 5 HOH A 118 1023 118 HOH HOH . 
H 5 HOH A 119 1024 119 HOH HOH . 
H 5 HOH A 120 1025 120 HOH HOH . 
H 5 HOH A 121 1026 121 HOH HOH . 
H 5 HOH A 122 1027 122 HOH HOH . 
H 5 HOH A 123 1028 123 HOH HOH . 
H 5 HOH A 124 1029 124 HOH HOH . 
H 5 HOH A 125 1030 125 HOH HOH . 
H 5 HOH A 126 1031 126 HOH HOH . 
H 5 HOH A 127 1032 127 HOH HOH . 
H 5 HOH A 128 1033 128 HOH HOH . 
H 5 HOH A 129 1034 129 HOH HOH . 
H 5 HOH A 130 1035 130 HOH HOH . 
H 5 HOH A 131 1036 131 HOH HOH . 
H 5 HOH A 132 1037 132 HOH HOH . 
H 5 HOH A 133 1038 133 HOH HOH . 
H 5 HOH A 134 1039 134 HOH HOH . 
H 5 HOH A 135 1040 135 HOH HOH . 
H 5 HOH A 136 1041 136 HOH HOH . 
H 5 HOH A 137 1042 137 HOH HOH . 
H 5 HOH A 138 1043 138 HOH HOH . 
H 5 HOH A 139 1044 139 HOH HOH . 
H 5 HOH A 140 1045 140 HOH HOH . 
H 5 HOH A 141 1046 141 HOH HOH . 
H 5 HOH A 142 1047 142 HOH HOH . 
H 5 HOH A 143 1048 143 HOH HOH . 
H 5 HOH A 144 1049 144 HOH HOH . 
H 5 HOH A 145 1050 145 HOH HOH . 
H 5 HOH A 146 1051 146 HOH HOH . 
H 5 HOH A 147 1052 147 HOH HOH . 
H 5 HOH A 148 1053 148 HOH HOH . 
H 5 HOH A 149 1054 149 HOH HOH . 
H 5 HOH A 150 1055 150 HOH HOH . 
H 5 HOH A 151 1056 151 HOH HOH . 
H 5 HOH A 152 1057 152 HOH HOH . 
H 5 HOH A 153 1058 153 HOH HOH . 
H 5 HOH A 154 1059 154 HOH HOH . 
H 5 HOH A 155 1060 155 HOH HOH . 
H 5 HOH A 156 1061 156 HOH HOH . 
H 5 HOH A 157 1062 157 HOH HOH . 
H 5 HOH A 158 1063 158 HOH HOH . 
H 5 HOH A 159 1064 159 HOH HOH . 
H 5 HOH A 160 1065 160 HOH HOH . 
H 5 HOH A 161 1066 161 HOH HOH . 
H 5 HOH A 162 1067 162 HOH HOH . 
H 5 HOH A 163 1068 163 HOH HOH . 
H 5 HOH A 164 1069 164 HOH HOH . 
H 5 HOH A 165 1070 165 HOH HOH . 
H 5 HOH A 166 1071 166 HOH HOH . 
H 5 HOH A 167 1072 167 HOH HOH . 
H 5 HOH A 168 1073 168 HOH HOH . 
H 5 HOH A 169 1074 169 HOH HOH . 
H 5 HOH A 170 1075 170 HOH HOH . 
H 5 HOH A 171 1076 171 HOH HOH . 
H 5 HOH A 172 1077 172 HOH HOH . 
H 5 HOH A 173 1078 173 HOH HOH . 
H 5 HOH A 174 1079 174 HOH HOH . 
H 5 HOH A 175 1080 175 HOH HOH . 
H 5 HOH A 176 1081 176 HOH HOH . 
H 5 HOH A 177 1082 177 HOH HOH . 
H 5 HOH A 178 1083 178 HOH HOH . 
H 5 HOH A 179 1084 179 HOH HOH . 
H 5 HOH A 180 1085 180 HOH HOH . 
H 5 HOH A 181 1086 181 HOH HOH . 
H 5 HOH A 182 1087 182 HOH HOH . 
H 5 HOH A 183 1088 183 HOH HOH . 
H 5 HOH A 184 1089 184 HOH HOH . 
H 5 HOH A 185 1090 185 HOH HOH . 
H 5 HOH A 186 1091 186 HOH HOH . 
H 5 HOH A 187 1092 187 HOH HOH . 
H 5 HOH A 188 1093 188 HOH HOH . 
H 5 HOH A 189 1094 189 HOH HOH . 
H 5 HOH A 190 1095 190 HOH HOH . 
H 5 HOH A 191 1096 191 HOH HOH . 
H 5 HOH A 192 1097 192 HOH HOH . 
H 5 HOH A 193 1098 193 HOH HOH . 
H 5 HOH A 194 1099 194 HOH HOH . 
H 5 HOH A 195 1100 195 HOH HOH . 
H 5 HOH A 196 1101 196 HOH HOH . 
H 5 HOH A 197 1102 197 HOH HOH . 
H 5 HOH A 198 1103 198 HOH HOH . 
H 5 HOH A 199 1104 199 HOH HOH . 
H 5 HOH A 200 1105 200 HOH HOH . 
H 5 HOH A 201 1106 201 HOH HOH . 
H 5 HOH A 202 1107 202 HOH HOH . 
H 5 HOH A 203 1108 203 HOH HOH . 
H 5 HOH A 204 1109 204 HOH HOH . 
H 5 HOH A 205 1110 205 HOH HOH . 
H 5 HOH A 206 1111 206 HOH HOH . 
H 5 HOH A 207 1112 207 HOH HOH . 
H 5 HOH A 208 1113 208 HOH HOH . 
H 5 HOH A 209 1114 209 HOH HOH . 
H 5 HOH A 210 1115 210 HOH HOH . 
H 5 HOH A 211 1116 211 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HED . . . F 4 26.875 -1.145 13.111 0.5 42.04 ? C1 HED 904 A 1 
HETATM 2 O O1 HED . . . F 4 28.003 -1.233 12.272 0.5 41.77 ? O1 HED 904 A 1 
HETATM 3 C C2 HED . . . F 4 27.341 -1.151 14.559 0.5 42.21 ? C2 HED 904 A 1 
HETATM 4 S S3 HED . . . F 4 25.963 -0.982 15.718 0.5 42.59 ? S3 HED 904 A 1 
HETATM 5 S S4 HED . . . F 4 25.963 0.982 16.278 0.5 42.59 ? S4 HED 904 A 1 
HETATM 6 C C5 HED . . . F 4 27.341 1.151 17.437 0.5 42.21 ? C5 HED 904 A 1 
HETATM 7 C C6 HED . . . F 4 26.875 1.145 18.885 0.5 42.04 ? C6 HED 904 A 1 
HETATM 8 O O6 HED . . . F 4 28.003 1.233 19.724 0.5 41.77 ? O6 HED 904 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#