data_3DNJ # _model_server_result.job_id -hUwsrB4BUeX-2Wxz0V3pg _model_server_result.datetime_utc '2024-11-23 10:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3DNJ # _exptl.entry_id 3DNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.39 _cell.angle_gamma 90 _cell.entry_id 3DNJ _cell.length_a 33.693 _cell.length_b 53.974 _cell.length_c 44.824 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,G,I 1 1 A,C,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E MG MG . A MG 1 1_555 A O ASP 85 A ASP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 E MG MG . A MG 1 1_555 F O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc3 E MG MG . A MG 1 1_555 B O ASP 85 B ASP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc4 E MG MG . A MG 1 1_555 G O HOH . B HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DNJ _atom_sites.fract_transf_matrix[1][1] 0.02968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011032 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 1 1 MG MG . F 4 HOH A 1 120 120 HOH HOH . F 4 HOH A 2 121 121 HOH HOH . F 4 HOH A 3 122 122 HOH HOH . F 4 HOH A 4 123 123 HOH HOH . F 4 HOH A 5 124 124 HOH HOH . F 4 HOH A 6 125 125 HOH HOH . F 4 HOH A 7 126 126 HOH HOH . F 4 HOH A 8 127 127 HOH HOH . F 4 HOH A 9 128 128 HOH HOH . F 4 HOH A 10 129 129 HOH HOH . F 4 HOH A 11 130 130 HOH HOH . F 4 HOH A 12 131 131 HOH HOH . F 4 HOH A 13 132 132 HOH HOH . F 4 HOH A 14 133 133 HOH HOH . F 4 HOH A 15 134 134 HOH HOH . F 4 HOH A 16 135 135 HOH HOH . F 4 HOH A 17 136 136 HOH HOH . F 4 HOH A 18 137 137 HOH HOH . F 4 HOH A 19 138 138 HOH HOH . F 4 HOH A 20 139 139 HOH HOH . F 4 HOH A 21 140 140 HOH HOH . F 4 HOH A 22 141 141 HOH HOH . F 4 HOH A 23 142 142 HOH HOH . F 4 HOH A 24 143 143 HOH HOH . F 4 HOH A 25 144 144 HOH HOH . F 4 HOH A 26 145 145 HOH HOH . F 4 HOH A 27 146 146 HOH HOH . F 4 HOH A 28 147 147 HOH HOH . F 4 HOH A 29 148 148 HOH HOH . F 4 HOH A 30 149 149 HOH HOH . F 4 HOH A 31 150 150 HOH HOH . F 4 HOH A 32 151 151 HOH HOH . F 4 HOH A 33 152 152 HOH HOH . F 4 HOH A 34 153 153 HOH HOH . F 4 HOH A 35 154 154 HOH HOH . F 4 HOH A 36 155 155 HOH HOH . F 4 HOH A 37 156 156 HOH HOH . F 4 HOH A 38 157 157 HOH HOH . F 4 HOH A 39 158 158 HOH HOH . F 4 HOH A 40 159 159 HOH HOH . F 4 HOH A 41 160 160 HOH HOH . F 4 HOH A 42 161 161 HOH HOH . F 4 HOH A 43 162 162 HOH HOH . F 4 HOH A 44 163 163 HOH HOH . F 4 HOH A 45 164 164 HOH HOH . F 4 HOH A 46 165 165 HOH HOH . F 4 HOH A 47 166 166 HOH HOH . F 4 HOH A 48 167 167 HOH HOH . F 4 HOH A 49 168 168 HOH HOH . F 4 HOH A 50 169 169 HOH HOH . F 4 HOH A 51 170 170 HOH HOH . F 4 HOH A 52 171 171 HOH HOH . F 4 HOH A 53 172 172 HOH HOH . F 4 HOH A 54 173 173 HOH HOH . F 4 HOH A 55 174 174 HOH HOH . F 4 HOH A 56 175 175 HOH HOH . F 4 HOH A 57 176 176 HOH HOH . F 4 HOH A 58 177 177 HOH HOH . F 4 HOH A 59 178 178 HOH HOH . F 4 HOH A 60 179 179 HOH HOH . F 4 HOH A 61 180 180 HOH HOH . F 4 HOH A 62 181 181 HOH HOH . F 4 HOH A 63 182 182 HOH HOH . F 4 HOH A 64 183 183 HOH HOH . F 4 HOH A 65 184 184 HOH HOH . F 4 HOH A 66 185 185 HOH HOH . F 4 HOH A 67 186 186 HOH HOH . F 4 HOH A 68 187 187 HOH HOH . F 4 HOH A 69 188 188 HOH HOH . F 4 HOH A 70 189 189 HOH HOH . F 4 HOH A 71 190 190 HOH HOH . F 4 HOH A 72 191 191 HOH HOH . F 4 HOH A 73 192 192 HOH HOH . F 4 HOH A 74 193 193 HOH HOH . F 4 HOH A 75 194 194 HOH HOH . F 4 HOH A 76 195 195 HOH HOH . F 4 HOH A 77 196 196 HOH HOH . F 4 HOH A 78 197 197 HOH HOH . F 4 HOH A 79 198 198 HOH HOH . F 4 HOH A 80 199 199 HOH HOH . F 4 HOH A 81 200 200 HOH HOH . F 4 HOH A 82 201 201 HOH HOH . F 4 HOH A 83 202 202 HOH HOH . F 4 HOH A 84 203 203 HOH HOH . F 4 HOH A 85 204 204 HOH HOH . F 4 HOH A 86 205 205 HOH HOH . F 4 HOH A 87 206 206 HOH HOH . F 4 HOH A 88 207 207 HOH HOH . F 4 HOH A 89 208 208 HOH HOH . F 4 HOH A 90 209 209 HOH HOH . F 4 HOH A 91 210 210 HOH HOH . F 4 HOH A 92 211 211 HOH HOH . F 4 HOH A 93 212 212 HOH HOH . F 4 HOH A 94 213 213 HOH HOH . F 4 HOH A 95 214 214 HOH HOH . F 4 HOH A 96 215 215 HOH HOH . F 4 HOH A 97 216 216 HOH HOH . F 4 HOH A 98 217 217 HOH HOH . F 4 HOH A 99 218 218 HOH HOH . F 4 HOH A 100 219 219 HOH HOH . F 4 HOH A 101 220 220 HOH HOH . F 4 HOH A 102 221 221 HOH HOH . F 4 HOH A 103 222 222 HOH HOH . F 4 HOH A 104 223 223 HOH HOH . F 4 HOH A 105 224 224 HOH HOH . F 4 HOH A 106 225 225 HOH HOH . F 4 HOH A 107 226 226 HOH HOH . F 4 HOH A 108 227 227 HOH HOH . F 4 HOH A 109 228 228 HOH HOH . F 4 HOH A 110 229 229 HOH HOH . F 4 HOH A 111 230 230 HOH HOH . F 4 HOH A 112 231 231 HOH HOH . F 4 HOH A 113 232 232 HOH HOH . F 4 HOH A 114 233 233 HOH HOH . F 4 HOH A 115 234 234 HOH HOH . F 4 HOH A 116 235 235 HOH HOH . F 4 HOH A 117 236 236 HOH HOH . F 4 HOH A 118 237 237 HOH HOH . F 4 HOH A 119 238 238 HOH HOH . F 4 HOH A 120 239 239 HOH HOH . F 4 HOH A 121 240 240 HOH HOH . F 4 HOH A 122 241 241 HOH HOH . F 4 HOH A 123 242 242 HOH HOH . F 4 HOH A 124 243 243 HOH HOH . F 4 HOH A 125 244 244 HOH HOH . F 4 HOH A 126 245 245 HOH HOH . F 4 HOH A 127 246 246 HOH HOH . F 4 HOH A 128 247 247 HOH HOH . F 4 HOH A 129 248 248 HOH HOH . F 4 HOH A 130 249 249 HOH HOH . F 4 HOH A 131 250 250 HOH HOH . F 4 HOH A 132 251 251 HOH HOH . F 4 HOH A 133 252 252 HOH HOH . F 4 HOH A 134 253 253 HOH HOH . F 4 HOH A 135 254 254 HOH HOH . F 4 HOH A 136 255 255 HOH HOH . F 4 HOH A 137 256 256 HOH HOH . G 4 HOH B 1 168 168 HOH HOH . G 4 HOH B 2 169 169 HOH HOH . G 4 HOH B 3 170 170 HOH HOH . G 4 HOH B 4 171 171 HOH HOH . G 4 HOH B 5 172 172 HOH HOH . G 4 HOH B 6 173 173 HOH HOH . G 4 HOH B 7 174 174 HOH HOH . G 4 HOH B 8 175 175 HOH HOH . G 4 HOH B 9 176 176 HOH HOH . G 4 HOH B 10 177 177 HOH HOH . G 4 HOH B 11 178 178 HOH HOH . G 4 HOH B 12 179 179 HOH HOH . G 4 HOH B 13 180 180 HOH HOH . G 4 HOH B 14 181 181 HOH HOH . G 4 HOH B 15 182 182 HOH HOH . G 4 HOH B 16 183 183 HOH HOH . G 4 HOH B 17 184 184 HOH HOH . G 4 HOH B 18 185 185 HOH HOH . G 4 HOH B 19 186 186 HOH HOH . G 4 HOH B 20 187 187 HOH HOH . G 4 HOH B 21 188 188 HOH HOH . G 4 HOH B 22 189 189 HOH HOH . G 4 HOH B 23 190 190 HOH HOH . G 4 HOH B 24 191 191 HOH HOH . G 4 HOH B 25 192 192 HOH HOH . G 4 HOH B 26 193 193 HOH HOH . G 4 HOH B 27 194 194 HOH HOH . G 4 HOH B 28 195 195 HOH HOH . G 4 HOH B 29 196 196 HOH HOH . G 4 HOH B 30 197 197 HOH HOH . G 4 HOH B 31 198 198 HOH HOH . G 4 HOH B 32 199 199 HOH HOH . G 4 HOH B 33 200 200 HOH HOH . G 4 HOH B 34 201 201 HOH HOH . G 4 HOH B 35 202 202 HOH HOH . G 4 HOH B 36 203 203 HOH HOH . G 4 HOH B 37 204 204 HOH HOH . G 4 HOH B 38 205 205 HOH HOH . G 4 HOH B 39 206 206 HOH HOH . G 4 HOH B 40 207 207 HOH HOH . G 4 HOH B 41 208 208 HOH HOH . G 4 HOH B 42 209 209 HOH HOH . G 4 HOH B 43 210 210 HOH HOH . G 4 HOH B 44 211 211 HOH HOH . G 4 HOH B 45 212 212 HOH HOH . G 4 HOH B 46 213 213 HOH HOH . G 4 HOH B 47 214 214 HOH HOH . G 4 HOH B 48 215 215 HOH HOH . G 4 HOH B 49 216 216 HOH HOH . G 4 HOH B 50 217 217 HOH HOH . G 4 HOH B 51 218 218 HOH HOH . G 4 HOH B 52 219 219 HOH HOH . G 4 HOH B 53 220 220 HOH HOH . G 4 HOH B 54 221 221 HOH HOH . G 4 HOH B 55 222 222 HOH HOH . G 4 HOH B 56 223 223 HOH HOH . G 4 HOH B 57 224 224 HOH HOH . G 4 HOH B 58 225 225 HOH HOH . G 4 HOH B 59 226 226 HOH HOH . G 4 HOH B 60 227 227 HOH HOH . G 4 HOH B 61 228 228 HOH HOH . G 4 HOH B 62 229 229 HOH HOH . G 4 HOH B 63 230 230 HOH HOH . G 4 HOH B 64 231 231 HOH HOH . G 4 HOH B 65 232 232 HOH HOH . G 4 HOH B 66 233 233 HOH HOH . G 4 HOH B 67 234 234 HOH HOH . G 4 HOH B 68 235 235 HOH HOH . G 4 HOH B 69 236 236 HOH HOH . G 4 HOH B 70 237 237 HOH HOH . G 4 HOH B 71 238 238 HOH HOH . G 4 HOH B 72 239 239 HOH HOH . G 4 HOH B 73 240 240 HOH HOH . G 4 HOH B 74 241 241 HOH HOH . G 4 HOH B 75 242 242 HOH HOH . G 4 HOH B 76 243 243 HOH HOH . G 4 HOH B 77 244 244 HOH HOH . G 4 HOH B 78 245 245 HOH HOH . G 4 HOH B 79 246 246 HOH HOH . G 4 HOH B 80 247 247 HOH HOH . G 4 HOH B 81 248 248 HOH HOH . G 4 HOH B 82 249 249 HOH HOH . G 4 HOH B 83 250 250 HOH HOH . G 4 HOH B 84 251 251 HOH HOH . G 4 HOH B 85 252 252 HOH HOH . G 4 HOH B 86 253 253 HOH HOH . G 4 HOH B 87 254 254 HOH HOH . G 4 HOH B 88 255 255 HOH HOH . G 4 HOH B 89 256 256 HOH HOH . G 4 HOH B 90 257 257 HOH HOH . G 4 HOH B 91 258 258 HOH HOH . G 4 HOH B 92 259 259 HOH HOH . G 4 HOH B 93 260 260 HOH HOH . G 4 HOH B 94 261 261 HOH HOH . G 4 HOH B 95 262 262 HOH HOH . G 4 HOH B 96 263 263 HOH HOH . G 4 HOH B 97 264 264 HOH HOH . G 4 HOH B 98 265 265 HOH HOH . G 4 HOH B 99 266 266 HOH HOH . G 4 HOH B 100 267 267 HOH HOH . G 4 HOH B 101 268 268 HOH HOH . G 4 HOH B 102 269 269 HOH HOH . G 4 HOH B 103 270 270 HOH HOH . G 4 HOH B 104 271 271 HOH HOH . G 4 HOH B 105 272 272 HOH HOH . G 4 HOH B 106 273 273 HOH HOH . G 4 HOH B 107 274 274 HOH HOH . G 4 HOH B 108 275 275 HOH HOH . G 4 HOH B 109 276 276 HOH HOH . G 4 HOH B 110 277 277 HOH HOH . G 4 HOH B 111 278 278 HOH HOH . G 4 HOH B 112 279 279 HOH HOH . G 4 HOH B 113 280 280 HOH HOH . G 4 HOH B 114 281 281 HOH HOH . G 4 HOH B 115 282 282 HOH HOH . G 4 HOH B 116 283 283 HOH HOH . G 4 HOH B 117 284 284 HOH HOH . G 4 HOH B 118 285 285 HOH HOH . G 4 HOH B 119 286 286 HOH HOH . G 4 HOH B 120 287 287 HOH HOH . G 4 HOH B 121 288 288 HOH HOH . G 4 HOH B 122 289 289 HOH HOH . G 4 HOH B 123 290 290 HOH HOH . G 4 HOH B 124 291 291 HOH HOH . G 4 HOH B 125 292 292 HOH HOH . G 4 HOH B 126 293 293 HOH HOH . G 4 HOH B 127 294 294 HOH HOH . G 4 HOH B 128 295 295 HOH HOH . G 4 HOH B 129 296 296 HOH HOH . G 4 HOH B 130 297 297 HOH HOH . G 4 HOH B 131 298 298 HOH HOH . G 4 HOH B 132 299 299 HOH HOH . G 4 HOH B 133 300 300 HOH HOH . G 4 HOH B 134 301 301 HOH HOH . G 4 HOH B 135 302 302 HOH HOH . G 4 HOH B 136 303 303 HOH HOH . G 4 HOH B 137 304 304 HOH HOH . G 4 HOH B 138 305 305 HOH HOH . G 4 HOH B 139 306 306 HOH HOH . G 4 HOH B 140 307 307 HOH HOH . G 4 HOH B 141 308 308 HOH HOH . G 4 HOH B 142 309 309 HOH HOH . G 4 HOH B 143 310 310 HOH HOH . H 4 HOH C 1 174 174 HOH HOH . H 4 HOH C 2 190 190 HOH HOH . I 4 HOH D 1 242 242 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -7.357 _atom_site.Cartn_y -11.484 _atom_site.Cartn_z 20.293 _atom_site.occupancy 0.62 _atom_site.B_iso_or_equiv 15.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #