data_3DO5
#
_model_server_result.job_id            GPdr2HEW1k5e968cY63oPQ 
_model_server_result.datetime_utc      '2024-12-22 08:02:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3do5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":329}' 
#
_entry.id    3DO5 
#
_exptl.entry_id    3DO5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DO5 
_cell.length_a            119.107 
_cell.length_b            120.818 
_cell.length_c            57.886 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DO5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 2 A MSE 1 1_555 A N ILE 3 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A C ARG 58 A ARG 57 1_555 A N MSE 59 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale3 A C MSE 59 A MSE 58 1_555 A N LYS 60 A LYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 A C GLY 64 A GLY 63 1_555 A N MSE 65 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 A C MSE 65 A MSE 64 1_555 A N LEU 66 A LEU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 A C LEU 126 A LEU 125 1_555 A N MSE 127 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C MSE 127 A MSE 126 1_555 A N SER 128 A SER 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 A C LEU 137 A LEU 136 1_555 A N MSE 138 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale9 A C MSE 138 A MSE 137 1_555 A N TYR 139 A TYR 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 A C ALA 146 A ALA 145 1_555 A N MSE 147 A MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 A C MSE 147 A MSE 146 1_555 A N PRO 148 A PRO 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale12 A C ARG 179 A ARG 178 1_555 A N MSE 180 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 A C MSE 180 A MSE 179 1_555 A N GLU 181 A GLU 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 A C THR 285 A THR 284 1_555 A N MSE 286 A MSE 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale15 A C MSE 286 A MSE 285 1_555 A N ASN 287 A ASN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 A C ALA 289 A ALA 288 1_555 A N MSE 290 A MSE 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale17 A C MSE 290 A MSE 289 1_555 A N PHE 291 A PHE 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 237 n n 
C1 C2 PEG sing 238 n n 
C1 H11 PEG sing 239 n n 
C1 H12 PEG sing 240 n n 
O1 HO1 PEG sing 241 n n 
C2 O2 PEG sing 242 n n 
C2 H21 PEG sing 243 n n 
C2 H22 PEG sing 244 n n 
O2 C3 PEG sing 245 n n 
C3 C4 PEG sing 246 n n 
C3 H31 PEG sing 247 n n 
C3 H32 PEG sing 248 n n 
C4 O4 PEG sing 249 n n 
C4 H41 PEG sing 250 n n 
C4 H42 PEG sing 251 n n 
O4 HO4 PEG sing 252 n n 
#
_atom_sites.entry_id                     3DO5 
_atom_sites.fract_transf_matrix[1][1]    0.008396 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017275 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 327 2 PO4 PO4 . 
C 2 PO4 A 1 328 3 PO4 PO4 . 
D 3 PEG A 1 329 1 PEG PEG . 
E 4 HOH A 1 330 4 HOH HOH . 
E 4 HOH A 2 331 5 HOH HOH . 
E 4 HOH A 3 332 6 HOH HOH . 
E 4 HOH A 4 333 7 HOH HOH . 
E 4 HOH A 5 334 8 HOH HOH . 
E 4 HOH A 6 335 9 HOH HOH . 
E 4 HOH A 7 336 10 HOH HOH . 
E 4 HOH A 8 337 11 HOH HOH . 
E 4 HOH A 9 338 12 HOH HOH . 
E 4 HOH A 10 339 13 HOH HOH . 
E 4 HOH A 11 340 14 HOH HOH . 
E 4 HOH A 12 341 15 HOH HOH . 
E 4 HOH A 13 342 16 HOH HOH . 
E 4 HOH A 14 343 17 HOH HOH . 
E 4 HOH A 15 344 18 HOH HOH . 
E 4 HOH A 16 345 19 HOH HOH . 
E 4 HOH A 17 346 20 HOH HOH . 
E 4 HOH A 18 347 21 HOH HOH . 
E 4 HOH A 19 348 22 HOH HOH . 
E 4 HOH A 20 349 23 HOH HOH . 
E 4 HOH A 21 350 24 HOH HOH . 
E 4 HOH A 22 351 25 HOH HOH . 
E 4 HOH A 23 352 26 HOH HOH . 
E 4 HOH A 24 353 27 HOH HOH . 
E 4 HOH A 25 354 28 HOH HOH . 
E 4 HOH A 26 355 29 HOH HOH . 
E 4 HOH A 27 356 30 HOH HOH . 
E 4 HOH A 28 357 31 HOH HOH . 
E 4 HOH A 29 358 32 HOH HOH . 
E 4 HOH A 30 359 33 HOH HOH . 
E 4 HOH A 31 360 34 HOH HOH . 
E 4 HOH A 32 361 35 HOH HOH . 
E 4 HOH A 33 362 36 HOH HOH . 
E 4 HOH A 34 363 37 HOH HOH . 
E 4 HOH A 35 364 38 HOH HOH . 
E 4 HOH A 36 365 39 HOH HOH . 
E 4 HOH A 37 366 40 HOH HOH . 
E 4 HOH A 38 367 41 HOH HOH . 
E 4 HOH A 39 368 42 HOH HOH . 
E 4 HOH A 40 369 43 HOH HOH . 
E 4 HOH A 41 370 44 HOH HOH . 
E 4 HOH A 42 371 45 HOH HOH . 
E 4 HOH A 43 372 46 HOH HOH . 
E 4 HOH A 44 373 47 HOH HOH . 
E 4 HOH A 45 374 48 HOH HOH . 
E 4 HOH A 46 375 49 HOH HOH . 
E 4 HOH A 47 376 50 HOH HOH . 
E 4 HOH A 48 377 51 HOH HOH . 
E 4 HOH A 49 378 52 HOH HOH . 
E 4 HOH A 50 379 53 HOH HOH . 
E 4 HOH A 51 380 54 HOH HOH . 
E 4 HOH A 52 381 55 HOH HOH . 
E 4 HOH A 53 382 56 HOH HOH . 
E 4 HOH A 54 383 57 HOH HOH . 
E 4 HOH A 55 384 58 HOH HOH . 
E 4 HOH A 56 385 59 HOH HOH . 
E 4 HOH A 57 386 60 HOH HOH . 
E 4 HOH A 58 387 61 HOH HOH . 
E 4 HOH A 59 388 62 HOH HOH . 
E 4 HOH A 60 389 63 HOH HOH . 
E 4 HOH A 61 390 64 HOH HOH . 
E 4 HOH A 62 391 65 HOH HOH . 
E 4 HOH A 63 392 66 HOH HOH . 
E 4 HOH A 64 393 67 HOH HOH . 
E 4 HOH A 65 394 68 HOH HOH . 
E 4 HOH A 66 395 69 HOH HOH . 
E 4 HOH A 67 396 70 HOH HOH . 
E 4 HOH A 68 397 71 HOH HOH . 
E 4 HOH A 69 398 72 HOH HOH . 
E 4 HOH A 70 399 73 HOH HOH . 
E 4 HOH A 71 400 74 HOH HOH . 
E 4 HOH A 72 401 75 HOH HOH . 
E 4 HOH A 73 402 76 HOH HOH . 
E 4 HOH A 74 403 77 HOH HOH . 
E 4 HOH A 75 404 78 HOH HOH . 
E 4 HOH A 76 405 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . D 3 26.348 7.931 -24.819 1 74.06 ? C1 PEG 329 A 1 
HETATM 2 O O1 PEG . . . D 3 26.196 9.16 -25.549 1 75.67 ? O1 PEG 329 A 1 
HETATM 3 C C2 PEG . . . D 3 25.72 8.036 -23.434 1 71.48 ? C2 PEG 329 A 1 
HETATM 4 O O2 PEG . . . D 3 25.044 6.825 -23.076 1 74.45 ? O2 PEG 329 A 1 
HETATM 5 C C3 PEG . . . D 3 23.718 6.755 -23.599 1 77.93 ? C3 PEG 329 A 1 
HETATM 6 C C4 PEG . . . D 3 23.029 5.468 -23.174 1 76.68 ? C4 PEG 329 A 1 
HETATM 7 O O4 PEG . . . D 3 21.875 5.295 -24.011 1 81.65 ? O4 PEG 329 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#