data_3DOE # _model_server_result.job_id 8zoCc_WnduKaoFDBkmO4oA _model_server_result.datetime_utc '2024-11-26 14:07:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3doe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3DOE # _exptl.entry_id 3DOE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.46 _cell.angle_gamma 90 _cell.entry_id 3DOE _cell.length_a 57.827 _cell.length_b 44.081 _cell.length_c 66.495 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 3DOE _atom_sites.fract_transf_matrix[1][1] 0.017293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006798 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP A 1 201 201 GTP GTP . D 4 MG A 1 193 193 MG MG . E 5 HOH A 1 202 202 HOH HOH . E 5 HOH A 2 203 203 HOH HOH . E 5 HOH A 3 204 204 HOH HOH . E 5 HOH A 4 205 205 HOH HOH . E 5 HOH A 5 206 206 HOH HOH . E 5 HOH A 6 207 207 HOH HOH . E 5 HOH A 7 208 208 HOH HOH . E 5 HOH A 8 209 209 HOH HOH . E 5 HOH A 9 210 210 HOH HOH . E 5 HOH A 10 211 211 HOH HOH . E 5 HOH A 11 212 212 HOH HOH . E 5 HOH A 12 213 213 HOH HOH . E 5 HOH A 13 214 214 HOH HOH . E 5 HOH A 14 215 215 HOH HOH . E 5 HOH A 15 216 216 HOH HOH . E 5 HOH A 16 217 217 HOH HOH . E 5 HOH A 17 218 218 HOH HOH . E 5 HOH A 18 219 219 HOH HOH . E 5 HOH A 19 220 220 HOH HOH . E 5 HOH A 20 221 221 HOH HOH . E 5 HOH A 21 222 222 HOH HOH . E 5 HOH A 22 223 223 HOH HOH . E 5 HOH A 23 224 224 HOH HOH . E 5 HOH A 24 225 225 HOH HOH . E 5 HOH A 25 226 226 HOH HOH . E 5 HOH A 26 227 227 HOH HOH . E 5 HOH A 27 228 228 HOH HOH . E 5 HOH A 28 229 229 HOH HOH . E 5 HOH A 29 230 230 HOH HOH . E 5 HOH A 30 231 231 HOH HOH . E 5 HOH A 31 232 232 HOH HOH . E 5 HOH A 32 233 233 HOH HOH . E 5 HOH A 33 234 234 HOH HOH . E 5 HOH A 34 235 235 HOH HOH . E 5 HOH A 35 236 236 HOH HOH . E 5 HOH A 36 237 237 HOH HOH . E 5 HOH A 37 238 238 HOH HOH . E 5 HOH A 38 239 239 HOH HOH . E 5 HOH A 39 240 240 HOH HOH . E 5 HOH A 40 241 241 HOH HOH . E 5 HOH A 41 242 242 HOH HOH . E 5 HOH A 42 243 243 HOH HOH . E 5 HOH A 43 244 244 HOH HOH . E 5 HOH A 44 245 245 HOH HOH . E 5 HOH A 45 246 246 HOH HOH . E 5 HOH A 46 247 247 HOH HOH . E 5 HOH A 47 248 248 HOH HOH . E 5 HOH A 48 249 249 HOH HOH . E 5 HOH A 49 250 250 HOH HOH . E 5 HOH A 50 251 251 HOH HOH . E 5 HOH A 51 252 252 HOH HOH . E 5 HOH A 52 253 253 HOH HOH . E 5 HOH A 53 254 254 HOH HOH . E 5 HOH A 54 255 255 HOH HOH . E 5 HOH A 55 256 256 HOH HOH . E 5 HOH A 56 257 257 HOH HOH . E 5 HOH A 57 258 258 HOH HOH . E 5 HOH A 58 259 259 HOH HOH . E 5 HOH A 59 260 260 HOH HOH . E 5 HOH A 60 261 261 HOH HOH . E 5 HOH A 61 262 262 HOH HOH . E 5 HOH A 62 263 263 HOH HOH . E 5 HOH A 63 264 264 HOH HOH . E 5 HOH A 64 265 265 HOH HOH . E 5 HOH A 65 266 266 HOH HOH . E 5 HOH A 66 267 267 HOH HOH . E 5 HOH A 67 268 268 HOH HOH . E 5 HOH A 68 269 269 HOH HOH . E 5 HOH A 69 270 270 HOH HOH . E 5 HOH A 70 271 271 HOH HOH . E 5 HOH A 71 272 272 HOH HOH . E 5 HOH A 72 273 273 HOH HOH . E 5 HOH A 73 274 274 HOH HOH . E 5 HOH A 74 275 275 HOH HOH . E 5 HOH A 75 276 276 HOH HOH . E 5 HOH A 76 277 277 HOH HOH . E 5 HOH A 77 278 278 HOH HOH . E 5 HOH A 78 279 279 HOH HOH . E 5 HOH A 79 280 280 HOH HOH . F 5 HOH B 1 164 164 HOH HOH . F 5 HOH B 2 165 165 HOH HOH . F 5 HOH B 3 166 166 HOH HOH . F 5 HOH B 4 167 167 HOH HOH . F 5 HOH B 5 168 168 HOH HOH . F 5 HOH B 6 169 169 HOH HOH . F 5 HOH B 7 170 170 HOH HOH . F 5 HOH B 8 171 171 HOH HOH . F 5 HOH B 9 172 172 HOH HOH . F 5 HOH B 10 173 173 HOH HOH . F 5 HOH B 11 174 174 HOH HOH . F 5 HOH B 12 175 175 HOH HOH . F 5 HOH B 13 176 176 HOH HOH . F 5 HOH B 14 177 177 HOH HOH . F 5 HOH B 15 178 178 HOH HOH . F 5 HOH B 16 179 179 HOH HOH . F 5 HOH B 17 180 180 HOH HOH . F 5 HOH B 18 181 181 HOH HOH . F 5 HOH B 19 182 182 HOH HOH . F 5 HOH B 20 183 183 HOH HOH . F 5 HOH B 21 184 184 HOH HOH . F 5 HOH B 22 185 185 HOH HOH . F 5 HOH B 23 186 186 HOH HOH . F 5 HOH B 24 187 187 HOH HOH . F 5 HOH B 25 188 188 HOH HOH . F 5 HOH B 26 189 189 HOH HOH . F 5 HOH B 27 190 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 29.081 -24.197 36.451 1 28.51 ? PG GTP 201 A 1 HETATM 2 O O1G GTP . . . C 3 28.348 -25.481 36.764 1 28.77 ? O1G GTP 201 A 1 HETATM 3 O O2G GTP . . . C 3 30.57 -24.409 36.525 1 28.63 ? O2G GTP 201 A 1 HETATM 4 O O3G GTP . . . C 3 28.666 -23.135 37.442 1 29 ? O3G GTP 201 A 1 HETATM 5 O O3B GTP . . . C 3 28.703 -23.727 34.955 1 26.57 ? O3B GTP 201 A 1 HETATM 6 P PB GTP . . . C 3 28.905 -22.191 34.501 1 26.41 ? PB GTP 201 A 1 HETATM 7 O O1B GTP . . . C 3 27.883 -21.316 35.192 1 24.18 ? O1B GTP 201 A 1 HETATM 8 O O2B GTP . . . C 3 30.32 -21.71 34.735 1 24.67 ? O2B GTP 201 A 1 HETATM 9 O O3A GTP . . . C 3 28.556 -22.25 32.937 1 24.44 ? O3A GTP 201 A 1 HETATM 10 P PA GTP . . . C 3 29.664 -22.635 31.841 1 25.33 ? PA GTP 201 A 1 HETATM 11 O O1A GTP . . . C 3 30.62 -21.478 31.645 1 24.78 ? O1A GTP 201 A 1 HETATM 12 O O2A GTP . . . C 3 30.391 -23.912 32.218 1 24.88 ? O2A GTP 201 A 1 HETATM 13 O O5' GTP . . . C 3 28.759 -22.851 30.53 1 24.91 ? O5' GTP 201 A 1 HETATM 14 C C5' GTP . . . C 3 27.903 -23.977 30.426 1 27.27 ? C5' GTP 201 A 1 HETATM 15 C C4' GTP . . . C 3 27.609 -24.291 28.958 1 26.66 ? C4' GTP 201 A 1 HETATM 16 O O4' GTP . . . C 3 26.962 -23.183 28.355 1 27.37 ? O4' GTP 201 A 1 HETATM 17 C C3' GTP . . . C 3 28.9 -24.519 28.182 1 29.14 ? C3' GTP 201 A 1 HETATM 18 O O3' GTP . . . C 3 28.696 -25.508 27.178 1 28.85 ? O3' GTP 201 A 1 HETATM 19 C C2' GTP . . . C 3 29.153 -23.173 27.523 1 28.17 ? C2' GTP 201 A 1 HETATM 20 O O2' GTP . . . C 3 29.911 -23.295 26.349 1 29.68 ? O2' GTP 201 A 1 HETATM 21 C C1' GTP . . . C 3 27.725 -22.715 27.255 1 28.38 ? C1' GTP 201 A 1 HETATM 22 N N9 GTP . . . C 3 27.613 -21.258 27.108 1 27.16 ? N9 GTP 201 A 1 HETATM 23 C C8 GTP . . . C 3 28.199 -20.298 27.891 1 28.7 ? C8 GTP 201 A 1 HETATM 24 N N7 GTP . . . C 3 27.837 -19.085 27.418 1 28.16 ? N7 GTP 201 A 1 HETATM 25 C C5 GTP . . . C 3 27.028 -19.26 26.355 1 28.39 ? C5 GTP 201 A 1 HETATM 26 C C6 GTP . . . C 3 26.386 -18.368 25.504 1 28.13 ? C6 GTP 201 A 1 HETATM 27 O O6 GTP . . . C 3 26.508 -17.155 25.674 1 28.86 ? O6 GTP 201 A 1 HETATM 28 N N1 GTP . . . C 3 25.606 -18.856 24.472 1 27.32 ? N1 GTP 201 A 1 HETATM 29 C C2 GTP . . . C 3 25.469 -20.22 24.284 1 25.37 ? C2 GTP 201 A 1 HETATM 30 N N2 GTP . . . C 3 24.72 -20.687 23.291 1 25.33 ? N2 GTP 201 A 1 HETATM 31 N N3 GTP . . . C 3 26.114 -21.099 25.131 1 26.43 ? N3 GTP 201 A 1 HETATM 32 C C4 GTP . . . C 3 26.879 -20.626 26.148 1 27.98 ? C4 GTP 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #