data_3DOF
#
_model_server_result.job_id            XmNg6qb3IVcPRQ8tvOJc1w 
_model_server_result.datetime_utc      '2024-11-05 00:41:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dof 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    3DOF 
#
_exptl.entry_id    3DOF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DOF 
_cell.length_a            44.663 
_cell.length_b            45.165 
_cell.length_c            175.879 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DOF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     3DOF 
_atom_sites.fract_transf_matrix[1][1]    0.02239 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022141 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005686 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GTP A 1 201 201 GTP GTP . 
D 4 MG A 1 193 193 MG MG . 
E 5 HOH A 1 202 202 HOH HOH . 
E 5 HOH A 2 203 203 HOH HOH . 
E 5 HOH A 3 204 204 HOH HOH . 
E 5 HOH A 4 205 205 HOH HOH . 
E 5 HOH A 5 206 206 HOH HOH . 
E 5 HOH A 6 207 207 HOH HOH . 
E 5 HOH A 7 208 208 HOH HOH . 
E 5 HOH A 8 209 209 HOH HOH . 
F 5 HOH B 1 164 164 HOH HOH . 
F 5 HOH B 2 165 165 HOH HOH . 
F 5 HOH B 3 166 166 HOH HOH . 
F 5 HOH B 4 167 167 HOH HOH . 
F 5 HOH B 5 168 168 HOH HOH . 
F 5 HOH B 6 169 169 HOH HOH . 
F 5 HOH B 7 170 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . C 3 6.256 3.364 11.582 1 68.33 ? PG GTP 201 A 1 
HETATM 2 O O1G GTP . . . C 3 4.995 4.192 11.551 1 68.32 ? O1G GTP 201 A 1 
HETATM 3 O O2G GTP . . . C 3 5.997 2.086 12.339 1 68.27 ? O2G GTP 201 A 1 
HETATM 4 O O3G GTP . . . C 3 7.368 4.146 12.243 1 68.38 ? O3G GTP 201 A 1 
HETATM 5 O O3B GTP . . . C 3 6.669 3.001 10.07 1 67.68 ? O3B GTP 201 A 1 
HETATM 6 P PB GTP . . . C 3 8.175 2.536 9.753 1 67.35 ? PB GTP 201 A 1 
HETATM 7 O O1B GTP . . . C 3 9.045 3.759 9.6 1 66.96 ? O1B GTP 201 A 1 
HETATM 8 O O2B GTP . . . C 3 8.702 1.615 10.829 1 67.23 ? O2B GTP 201 A 1 
HETATM 9 O O3A GTP . . . C 3 8.067 1.781 8.336 1 67.78 ? O3A GTP 201 A 1 
HETATM 10 P PA GTP . . . C 3 7.657 0.228 8.224 1 68.91 ? PA GTP 201 A 1 
HETATM 11 O O1A GTP . . . C 3 8.816 -0.642 8.648 1 68.16 ? O1A GTP 201 A 1 
HETATM 12 O O2A GTP . . . C 3 6.422 -0.075 9.039 1 68.27 ? O2A GTP 201 A 1 
HETATM 13 O O5' GTP . . . C 3 7.372 0.05 6.649 1 68.52 ? O5' GTP 201 A 1 
HETATM 14 C C5' GTP . . . C 3 6.411 0.86 6.003 1 70.46 ? C5' GTP 201 A 1 
HETATM 15 C C4' GTP . . . C 3 6.268 0.483 4.531 1 71.38 ? C4' GTP 201 A 1 
HETATM 16 O O4' GTP . . . C 3 7.423 0.858 3.797 1 71.61 ? O4' GTP 201 A 1 
HETATM 17 C C3' GTP . . . C 3 6.079 -1.017 4.355 1 71.64 ? C3' GTP 201 A 1 
HETATM 18 O O3' GTP . . . C 3 4.962 -1.255 3.529 1 72.04 ? O3' GTP 201 A 1 
HETATM 19 C C2' GTP . . . C 3 7.355 -1.477 3.68 1 72.1 ? C2' GTP 201 A 1 
HETATM 20 O O2' GTP . . . C 3 7.123 -2.527 2.766 1 72.52 ? O2' GTP 201 A 1 
HETATM 21 C C1' GTP . . . C 3 7.845 -0.219 2.98 1 73.75 ? C1' GTP 201 A 1 
HETATM 22 N N9 GTP . . . C 3 9.309 -0.253 2.792 1 74.24 ? N9 GTP 201 A 1 
HETATM 23 C C8 GTP . . . C 3 10.271 -0.287 3.768 1 74.89 ? C8 GTP 201 A 1 
HETATM 24 N N7 GTP . . . C 3 11.486 -0.318 3.175 1 74.82 ? N7 GTP 201 A 1 
HETATM 25 C C5 GTP . . . C 3 11.317 -0.306 1.834 1 75.27 ? C5 GTP 201 A 1 
HETATM 26 C C6 GTP . . . C 3 12.216 -0.321 0.769 1 74.8 ? C6 GTP 201 A 1 
HETATM 27 O O6 GTP . . . C 3 13.426 -0.356 0.979 1 74.75 ? O6 GTP 201 A 1 
HETATM 28 N N1 GTP . . . C 3 11.741 -0.3 -0.529 1 74.87 ? N1 GTP 201 A 1 
HETATM 29 C C2 GTP . . . C 3 10.378 -0.261 -0.763 1 74.87 ? C2 GTP 201 A 1 
HETATM 30 N N2 GTP . . . C 3 9.916 -0.24 -2.009 1 74.88 ? N2 GTP 201 A 1 
HETATM 31 N N3 GTP . . . C 3 9.493 -0.246 0.299 1 75.03 ? N3 GTP 201 A 1 
HETATM 32 C C4 GTP . . . C 3 9.952 -0.266 1.578 1 74.63 ? C4 GTP 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#