data_3DOG
#
_model_server_result.job_id            JprRO55zHaRf2T0u8VeaVQ 
_model_server_result.datetime_utc      '2024-11-22 20:21:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dog 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":435}' 
#
_entry.id    3DOG 
#
_exptl.entry_id    3DOG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              108.159 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            MONOTHIOGLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DOG 
_cell.length_a            74.42 
_cell.length_b            133.489 
_cell.length_c            147.996 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DOG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
C,D,H,I,L,M 1 1 
A,B,E,F,G,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 160 A TYR 159 1_555 A N TPO 161 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C TPO 161 A TPO 160 1_555 A N HIS 162 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 C C TYR 160 C TYR 159 1_555 C N TPO 161 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 C C TPO 161 C TPO 160 1_555 C N HIS 162 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O2 S' 
_chem_comp.formula_weight    108.159 
_chem_comp.id                SGM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              MONOTHIOGLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SGM sing 344 n n 
C1 S1 SGM sing 345 n n 
C1 H11 SGM sing 346 n n 
C1 H12 SGM sing 347 n n 
C2 O2 SGM sing 348 n n 
C2 C3 SGM sing 349 n n 
C2 H2 SGM sing 350 n n 
O2 HO2 SGM sing 351 n n 
C3 O3 SGM sing 352 n n 
C3 H31 SGM sing 353 n n 
C3 H32 SGM sing 354 n n 
O3 HO3 SGM sing 355 n n 
S1 HS1 SGM sing 356 n n 
#
_atom_sites.entry_id                     3DOG 
_atom_sites.fract_transf_matrix[1][1]    0.013437 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006757 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NNN A 1 299 1 NNN NNN . 
F 4 SGM B 1 1 1 SGM SGM . 
G 4 SGM B 1 435 1 SGM SGM . 
H 3 NNN C 1 299 1 NNN NNN . 
I 4 SGM D 1 1 1 SGM SGM . 
J 5 HOH A 1 300 1 HOH HOH . 
J 5 HOH A 2 301 4 HOH HOH . 
J 5 HOH A 3 302 6 HOH HOH . 
J 5 HOH A 4 303 14 HOH HOH . 
J 5 HOH A 5 304 16 HOH HOH . 
J 5 HOH A 6 305 18 HOH HOH . 
J 5 HOH A 7 306 21 HOH HOH . 
J 5 HOH A 8 307 24 HOH HOH . 
J 5 HOH A 9 308 28 HOH HOH . 
J 5 HOH A 10 309 30 HOH HOH . 
J 5 HOH A 11 310 32 HOH HOH . 
J 5 HOH A 12 311 33 HOH HOH . 
J 5 HOH A 13 312 37 HOH HOH . 
J 5 HOH A 14 313 43 HOH HOH . 
J 5 HOH A 15 314 45 HOH HOH . 
J 5 HOH A 16 315 46 HOH HOH . 
J 5 HOH A 17 316 50 HOH HOH . 
J 5 HOH A 18 317 55 HOH HOH . 
J 5 HOH A 19 318 56 HOH HOH . 
J 5 HOH A 20 319 71 HOH HOH . 
J 5 HOH A 21 320 75 HOH HOH . 
J 5 HOH A 22 321 80 HOH HOH . 
J 5 HOH A 23 322 90 HOH HOH . 
J 5 HOH A 24 323 91 HOH HOH . 
J 5 HOH A 25 324 93 HOH HOH . 
J 5 HOH A 26 325 100 HOH HOH . 
J 5 HOH A 27 326 102 HOH HOH . 
J 5 HOH A 28 327 103 HOH HOH . 
J 5 HOH A 29 328 108 HOH HOH . 
J 5 HOH A 30 329 109 HOH HOH . 
J 5 HOH A 31 330 111 HOH HOH . 
J 5 HOH A 32 331 113 HOH HOH . 
J 5 HOH A 33 332 115 HOH HOH . 
J 5 HOH A 34 333 120 HOH HOH . 
J 5 HOH A 35 334 122 HOH HOH . 
J 5 HOH A 36 335 124 HOH HOH . 
J 5 HOH A 37 336 126 HOH HOH . 
J 5 HOH A 38 337 130 HOH HOH . 
J 5 HOH A 39 338 132 HOH HOH . 
J 5 HOH A 40 339 135 HOH HOH . 
J 5 HOH A 41 340 141 HOH HOH . 
J 5 HOH A 42 341 143 HOH HOH . 
J 5 HOH A 43 342 149 HOH HOH . 
J 5 HOH A 44 343 151 HOH HOH . 
J 5 HOH A 45 344 162 HOH HOH . 
J 5 HOH A 46 345 164 HOH HOH . 
J 5 HOH A 47 346 166 HOH HOH . 
J 5 HOH A 48 347 167 HOH HOH . 
J 5 HOH A 49 348 168 HOH HOH . 
J 5 HOH A 50 349 171 HOH HOH . 
J 5 HOH A 51 350 172 HOH HOH . 
J 5 HOH A 52 351 176 HOH HOH . 
J 5 HOH A 53 352 179 HOH HOH . 
J 5 HOH A 54 353 181 HOH HOH . 
J 5 HOH A 55 354 192 HOH HOH . 
J 5 HOH A 56 355 193 HOH HOH . 
J 5 HOH A 57 356 200 HOH HOH . 
J 5 HOH A 58 357 201 HOH HOH . 
J 5 HOH A 59 358 203 HOH HOH . 
J 5 HOH A 60 359 204 HOH HOH . 
J 5 HOH A 61 360 205 HOH HOH . 
J 5 HOH A 62 361 206 HOH HOH . 
J 5 HOH A 63 362 207 HOH HOH . 
J 5 HOH A 64 363 208 HOH HOH . 
J 5 HOH A 65 364 210 HOH HOH . 
J 5 HOH A 66 365 221 HOH HOH . 
J 5 HOH A 67 366 222 HOH HOH . 
J 5 HOH A 68 367 223 HOH HOH . 
J 5 HOH A 69 368 224 HOH HOH . 
J 5 HOH A 70 369 225 HOH HOH . 
J 5 HOH A 71 370 226 HOH HOH . 
J 5 HOH A 72 371 233 HOH HOH . 
J 5 HOH A 73 372 234 HOH HOH . 
K 5 HOH B 1 436 2 HOH HOH . 
K 5 HOH B 2 437 8 HOH HOH . 
K 5 HOH B 3 438 9 HOH HOH . 
K 5 HOH B 4 439 10 HOH HOH . 
K 5 HOH B 5 440 11 HOH HOH . 
K 5 HOH B 6 441 12 HOH HOH . 
K 5 HOH B 7 442 17 HOH HOH . 
K 5 HOH B 8 443 19 HOH HOH . 
K 5 HOH B 9 444 20 HOH HOH . 
K 5 HOH B 10 445 22 HOH HOH . 
K 5 HOH B 11 446 25 HOH HOH . 
K 5 HOH B 12 447 29 HOH HOH . 
K 5 HOH B 13 448 31 HOH HOH . 
K 5 HOH B 14 449 39 HOH HOH . 
K 5 HOH B 15 450 40 HOH HOH . 
K 5 HOH B 16 451 41 HOH HOH . 
K 5 HOH B 17 452 42 HOH HOH . 
K 5 HOH B 18 453 48 HOH HOH . 
K 5 HOH B 19 454 58 HOH HOH . 
K 5 HOH B 20 455 60 HOH HOH . 
K 5 HOH B 21 456 62 HOH HOH . 
K 5 HOH B 22 457 67 HOH HOH . 
K 5 HOH B 23 458 69 HOH HOH . 
K 5 HOH B 24 459 70 HOH HOH . 
K 5 HOH B 25 460 73 HOH HOH . 
K 5 HOH B 26 461 74 HOH HOH . 
K 5 HOH B 27 462 76 HOH HOH . 
K 5 HOH B 28 464 83 HOH HOH . 
K 5 HOH B 29 465 88 HOH HOH . 
K 5 HOH B 30 466 89 HOH HOH . 
K 5 HOH B 31 467 97 HOH HOH . 
K 5 HOH B 32 468 98 HOH HOH . 
K 5 HOH B 33 469 116 HOH HOH . 
K 5 HOH B 34 470 118 HOH HOH . 
K 5 HOH B 35 471 119 HOH HOH . 
K 5 HOH B 36 472 125 HOH HOH . 
K 5 HOH B 37 473 127 HOH HOH . 
K 5 HOH B 38 474 131 HOH HOH . 
K 5 HOH B 39 475 133 HOH HOH . 
K 5 HOH B 40 476 134 HOH HOH . 
K 5 HOH B 41 477 138 HOH HOH . 
K 5 HOH B 42 478 145 HOH HOH . 
K 5 HOH B 43 479 147 HOH HOH . 
K 5 HOH B 44 480 159 HOH HOH . 
K 5 HOH B 45 481 160 HOH HOH . 
K 5 HOH B 46 482 161 HOH HOH . 
K 5 HOH B 47 483 165 HOH HOH . 
K 5 HOH B 48 484 190 HOH HOH . 
K 5 HOH B 49 485 191 HOH HOH . 
K 5 HOH B 50 486 194 HOH HOH . 
K 5 HOH B 51 487 195 HOH HOH . 
K 5 HOH B 52 488 202 HOH HOH . 
K 5 HOH B 53 489 212 HOH HOH . 
K 5 HOH B 54 490 213 HOH HOH . 
K 5 HOH B 55 491 229 HOH HOH . 
K 5 HOH B 56 492 236 HOH HOH . 
K 5 HOH B 57 493 238 HOH HOH . 
K 5 HOH B 58 494 240 HOH HOH . 
K 5 HOH B 59 495 243 HOH HOH . 
L 5 HOH C 1 300 13 HOH HOH . 
L 5 HOH C 2 301 15 HOH HOH . 
L 5 HOH C 3 302 23 HOH HOH . 
L 5 HOH C 4 303 44 HOH HOH . 
L 5 HOH C 5 304 49 HOH HOH . 
L 5 HOH C 6 305 51 HOH HOH . 
L 5 HOH C 7 306 52 HOH HOH . 
L 5 HOH C 8 307 54 HOH HOH . 
L 5 HOH C 9 308 57 HOH HOH . 
L 5 HOH C 10 309 59 HOH HOH . 
L 5 HOH C 11 310 63 HOH HOH . 
L 5 HOH C 12 311 64 HOH HOH . 
L 5 HOH C 13 312 65 HOH HOH . 
L 5 HOH C 14 313 66 HOH HOH . 
L 5 HOH C 15 314 72 HOH HOH . 
L 5 HOH C 16 315 79 HOH HOH . 
L 5 HOH C 17 316 82 HOH HOH . 
L 5 HOH C 18 317 86 HOH HOH . 
L 5 HOH C 19 318 95 HOH HOH . 
L 5 HOH C 20 319 99 HOH HOH . 
L 5 HOH C 21 320 101 HOH HOH . 
L 5 HOH C 22 321 107 HOH HOH . 
L 5 HOH C 23 322 110 HOH HOH . 
L 5 HOH C 24 323 114 HOH HOH . 
L 5 HOH C 25 324 123 HOH HOH . 
L 5 HOH C 26 325 139 HOH HOH . 
L 5 HOH C 27 326 142 HOH HOH . 
L 5 HOH C 28 327 154 HOH HOH . 
L 5 HOH C 29 328 169 HOH HOH . 
L 5 HOH C 30 329 170 HOH HOH . 
L 5 HOH C 31 330 174 HOH HOH . 
L 5 HOH C 32 331 178 HOH HOH . 
L 5 HOH C 33 332 180 HOH HOH . 
L 5 HOH C 34 333 185 HOH HOH . 
L 5 HOH C 35 334 186 HOH HOH . 
L 5 HOH C 36 335 196 HOH HOH . 
L 5 HOH C 37 336 198 HOH HOH . 
L 5 HOH C 38 337 199 HOH HOH . 
L 5 HOH C 39 338 215 HOH HOH . 
L 5 HOH C 40 339 216 HOH HOH . 
L 5 HOH C 41 340 232 HOH HOH . 
L 5 HOH C 42 341 235 HOH HOH . 
L 5 HOH C 43 342 237 HOH HOH . 
L 5 HOH C 44 343 239 HOH HOH . 
L 5 HOH C 45 344 241 HOH HOH . 
M 5 HOH D 1 463 81 HOH HOH . 
M 5 HOH D 2 464 5 HOH HOH . 
M 5 HOH D 3 465 26 HOH HOH . 
M 5 HOH D 4 466 34 HOH HOH . 
M 5 HOH D 5 467 36 HOH HOH . 
M 5 HOH D 6 468 38 HOH HOH . 
M 5 HOH D 7 469 47 HOH HOH . 
M 5 HOH D 8 470 53 HOH HOH . 
M 5 HOH D 9 471 61 HOH HOH . 
M 5 HOH D 10 472 78 HOH HOH . 
M 5 HOH D 11 473 84 HOH HOH . 
M 5 HOH D 12 474 87 HOH HOH . 
M 5 HOH D 13 475 94 HOH HOH . 
M 5 HOH D 14 476 96 HOH HOH . 
M 5 HOH D 15 477 112 HOH HOH . 
M 5 HOH D 16 478 117 HOH HOH . 
M 5 HOH D 17 479 121 HOH HOH . 
M 5 HOH D 18 480 128 HOH HOH . 
M 5 HOH D 19 481 129 HOH HOH . 
M 5 HOH D 20 482 136 HOH HOH . 
M 5 HOH D 21 483 150 HOH HOH . 
M 5 HOH D 22 484 152 HOH HOH . 
M 5 HOH D 23 485 153 HOH HOH . 
M 5 HOH D 24 486 155 HOH HOH . 
M 5 HOH D 25 487 157 HOH HOH . 
M 5 HOH D 26 488 163 HOH HOH . 
M 5 HOH D 27 489 173 HOH HOH . 
M 5 HOH D 28 490 177 HOH HOH . 
M 5 HOH D 29 491 184 HOH HOH . 
M 5 HOH D 30 492 214 HOH HOH . 
M 5 HOH D 31 493 217 HOH HOH . 
M 5 HOH D 32 494 218 HOH HOH . 
M 5 HOH D 33 495 219 HOH HOH . 
M 5 HOH D 34 496 227 HOH HOH . 
M 5 HOH D 35 497 228 HOH HOH . 
M 5 HOH D 36 498 230 HOH HOH . 
M 5 HOH D 37 499 231 HOH HOH . 
M 5 HOH D 38 500 242 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SGM . . . G 4 -14.512 11.301 17.624 1 66.04 ? C1 SGM 435 B 1 
HETATM 2 C C2 SGM . . . G 4 -13.295 11.989 17.003 1 66.23 ? C2 SGM 435 B 1 
HETATM 3 O O2 SGM . . . G 4 -13.681 13.333 16.661 1 66.19 ? O2 SGM 435 B 1 
HETATM 4 C C3 SGM . . . G 4 -12.84 11.241 15.74 1 66.06 ? C3 SGM 435 B 1 
HETATM 5 O O3 SGM . . . G 4 -11.933 10.186 16.104 1 65.78 ? O3 SGM 435 B 1 
HETATM 6 S S1 SGM . . . G 4 -14.079 9.585 18.194 1 66.19 ? S1 SGM 435 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#