data_3DOO # _model_server_result.job_id xPW69qEndKg5ndKSGaAdvA _model_server_result.datetime_utc '2024-11-26 01:58:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3doo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3DOO # _exptl.entry_id 3DOO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.14 _cell.angle_gamma 90 _cell.entry_id 3DOO _cell.length_a 45.189 _cell.length_b 52.529 _cell.length_c 56.777 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H10 O5' _chem_comp.formula_weight 174.151 _chem_comp.id SKM _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SHIKIMATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C8 SKM sing 277 n n O12 H12 SKM sing 278 n n C8 C6 SKM sing 279 n n C8 C9 SKM sing 280 n n C8 H8 SKM sing 281 n n C6 O7 SKM sing 282 n n C6 C5 SKM sing 283 n n C6 H6 SKM sing 284 n n O7 HO7 SKM sing 285 n n C5 C4 SKM sing 286 n n C5 H51 SKM sing 287 n n C5 H52 SKM sing 288 n n C4 C1 SKM sing 289 n n C4 C10 SKM doub 290 n n C1 O2 SKM sing 291 n n C1 O3 SKM doub 292 n n O2 HO2 SKM sing 293 n n C10 C9 SKM sing 294 n n C10 H10 SKM sing 295 n n C9 O11 SKM sing 296 n n C9 H9 SKM sing 297 n n O11 H11 SKM sing 298 n n # _atom_sites.entry_id 3DOO _atom_sites.fract_transf_matrix[1][1] 0.022129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SKM A 1 300 300 SKM SKM . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 59 HOH HOH . C 3 HOH A 59 359 60 HOH HOH . C 3 HOH A 60 360 61 HOH HOH . C 3 HOH A 61 361 62 HOH HOH . C 3 HOH A 62 362 63 HOH HOH . C 3 HOH A 63 363 64 HOH HOH . C 3 HOH A 64 364 65 HOH HOH . C 3 HOH A 65 365 66 HOH HOH . C 3 HOH A 66 366 67 HOH HOH . C 3 HOH A 67 367 68 HOH HOH . C 3 HOH A 68 368 69 HOH HOH . C 3 HOH A 69 369 70 HOH HOH . C 3 HOH A 70 370 71 HOH HOH . C 3 HOH A 71 371 72 HOH HOH . C 3 HOH A 72 372 73 HOH HOH . C 3 HOH A 73 373 74 HOH HOH . C 3 HOH A 74 374 75 HOH HOH . C 3 HOH A 75 375 76 HOH HOH . C 3 HOH A 76 376 77 HOH HOH . C 3 HOH A 77 377 78 HOH HOH . C 3 HOH A 78 378 79 HOH HOH . C 3 HOH A 79 379 80 HOH HOH . C 3 HOH A 80 380 81 HOH HOH . C 3 HOH A 81 381 82 HOH HOH . C 3 HOH A 82 382 84 HOH HOH . C 3 HOH A 83 383 85 HOH HOH . C 3 HOH A 84 384 86 HOH HOH . C 3 HOH A 85 385 87 HOH HOH . C 3 HOH A 86 386 89 HOH HOH . C 3 HOH A 87 387 90 HOH HOH . C 3 HOH A 88 388 91 HOH HOH . C 3 HOH A 89 389 92 HOH HOH . C 3 HOH A 90 390 93 HOH HOH . C 3 HOH A 91 391 94 HOH HOH . C 3 HOH A 92 392 96 HOH HOH . C 3 HOH A 93 393 98 HOH HOH . C 3 HOH A 94 394 99 HOH HOH . C 3 HOH A 95 395 100 HOH HOH . C 3 HOH A 96 396 101 HOH HOH . C 3 HOH A 97 397 102 HOH HOH . C 3 HOH A 98 398 103 HOH HOH . C 3 HOH A 99 399 104 HOH HOH . C 3 HOH A 100 400 105 HOH HOH . C 3 HOH A 101 401 106 HOH HOH . C 3 HOH A 102 402 108 HOH HOH . C 3 HOH A 103 403 109 HOH HOH . C 3 HOH A 104 404 110 HOH HOH . C 3 HOH A 105 405 111 HOH HOH . C 3 HOH A 106 406 112 HOH HOH . C 3 HOH A 107 407 113 HOH HOH . C 3 HOH A 108 408 114 HOH HOH . C 3 HOH A 109 409 115 HOH HOH . C 3 HOH A 110 410 116 HOH HOH . C 3 HOH A 111 411 117 HOH HOH . C 3 HOH A 112 412 118 HOH HOH . C 3 HOH A 113 413 119 HOH HOH . C 3 HOH A 114 414 120 HOH HOH . C 3 HOH A 115 415 121 HOH HOH . C 3 HOH A 116 416 122 HOH HOH . C 3 HOH A 117 417 123 HOH HOH . C 3 HOH A 118 418 124 HOH HOH . C 3 HOH A 119 419 125 HOH HOH . C 3 HOH A 120 420 126 HOH HOH . C 3 HOH A 121 421 127 HOH HOH . C 3 HOH A 122 422 128 HOH HOH . C 3 HOH A 123 423 130 HOH HOH . C 3 HOH A 124 424 131 HOH HOH . C 3 HOH A 125 425 132 HOH HOH . C 3 HOH A 126 426 133 HOH HOH . C 3 HOH A 127 427 134 HOH HOH . C 3 HOH A 128 428 135 HOH HOH . C 3 HOH A 129 429 136 HOH HOH . C 3 HOH A 130 430 137 HOH HOH . C 3 HOH A 131 431 138 HOH HOH . C 3 HOH A 132 432 139 HOH HOH . C 3 HOH A 133 433 140 HOH HOH . C 3 HOH A 134 434 141 HOH HOH . C 3 HOH A 135 435 142 HOH HOH . C 3 HOH A 136 436 143 HOH HOH . C 3 HOH A 137 437 144 HOH HOH . C 3 HOH A 138 438 145 HOH HOH . C 3 HOH A 139 439 146 HOH HOH . C 3 HOH A 140 440 148 HOH HOH . C 3 HOH A 141 441 150 HOH HOH . C 3 HOH A 142 442 151 HOH HOH . C 3 HOH A 143 443 152 HOH HOH . C 3 HOH A 144 444 154 HOH HOH . C 3 HOH A 145 445 155 HOH HOH . C 3 HOH A 146 446 156 HOH HOH . C 3 HOH A 147 447 157 HOH HOH . C 3 HOH A 148 448 158 HOH HOH . C 3 HOH A 149 449 160 HOH HOH . C 3 HOH A 150 450 161 HOH HOH . C 3 HOH A 151 451 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 SKM . . . B 2 20.643 -1.879 21.194 1 25.18 ? O12 SKM 300 A 1 HETATM 2 C C8 SKM . . . B 2 21.971 -2.344 20.942 1 24.44 ? C8 SKM 300 A 1 HETATM 3 C C6 SKM . . . B 2 22.736 -2.085 22.232 1 23 ? C6 SKM 300 A 1 HETATM 4 O O7 SKM . . . B 2 22.765 -0.656 22.425 1 27.72 ? O7 SKM 300 A 1 HETATM 5 C C5 SKM . . . B 2 24.135 -2.663 22.16 1 24.39 ? C5 SKM 300 A 1 HETATM 6 C C4 SKM . . . B 2 24.214 -4.015 21.433 1 24.84 ? C4 SKM 300 A 1 HETATM 7 C C1 SKM . . . B 2 25.435 -4.839 21.525 1 27.24 ? C1 SKM 300 A 1 HETATM 8 O O2 SKM . . . B 2 26.456 -4.384 22.122 1 26.62 ? O2 SKM 300 A 1 HETATM 9 O O3 SKM . . . B 2 25.441 -6 21 1 25.33 ? O3 SKM 300 A 1 HETATM 10 C C10 SKM . . . B 2 23.201 -4.498 20.667 1 24.86 ? C10 SKM 300 A 1 HETATM 11 C C9 SKM . . . B 2 21.868 -3.83 20.536 1 23.37 ? C9 SKM 300 A 1 HETATM 12 O O11 SKM . . . B 2 20.982 -4.459 21.452 1 28.43 ? O11 SKM 300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 12 #