data_3DP4
#
_model_server_result.job_id            YfQzUESD8RxzDu06fLoR9Q 
_model_server_result.datetime_utc      '2024-11-24 07:54:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dp4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":374}' 
#
_entry.id    3DP4 
#
_exptl.entry_id    3DP4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              186.165 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(S)-ALPHA-AMINO-3-HYDROXY-5-METHYL-4-ISOXAZOLEPROPIONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DP4 
_cell.length_a            47.342 
_cell.length_b            47.342 
_cell.length_c            138.268 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DP4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        17 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 222 A CYS 206 1_555 A SG CYS 277 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A NE2 HIS 39 A HIS 23 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
#
_chem_comp.formula           'C7 H10 N2 O4' 
_chem_comp.formula_weight    186.165 
_chem_comp.id                AMQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(S)-ALPHA-AMINO-3-HYDROXY-5-METHYL-4-ISOXAZOLEPROPIONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     AMPA 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA AMQ sing 13 n n 
N H AMQ sing 14 n n 
N HN2 AMQ sing 15 n n 
CA C AMQ sing 16 n n 
CA CB AMQ sing 17 n n 
CA HA AMQ sing 18 n n 
C OT1 AMQ doub 19 n n 
C OT2 AMQ sing 20 n n 
OT2 HXT AMQ sing 21 n n 
CB CG AMQ sing 22 n n 
CB HB1 AMQ sing 23 n n 
CB HB2 AMQ sing 24 n n 
CG CD1 AMQ sing 25 n y 
CG CD2 AMQ doub 26 n y 
CD1 OE1 AMQ sing 27 n n 
CD1 NE1 AMQ doub 28 n y 
CD2 CE2 AMQ sing 29 n n 
CD2 OE2 AMQ sing 30 n y 
CE2 HE21 AMQ sing 31 n n 
CE2 HE22 AMQ sing 32 n n 
CE2 HE23 AMQ sing 33 n n 
OE1 HE1 AMQ sing 34 n n 
NE1 OE2 AMQ sing 35 n y 
#
_atom_sites.entry_id                     3DP4 
_atom_sites.fract_transf_matrix[1][1]    0.021123 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007232 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 301 ZN ZN . 
C 2 ZN A 1 302 302 ZN ZN . 
D 3 AMQ A 1 374 374 AMQ AMQ . 
E 4 HOH A 1 375 375 HOH HOH . 
E 4 HOH A 2 376 376 HOH HOH . 
E 4 HOH A 3 377 377 HOH HOH . 
E 4 HOH A 4 378 378 HOH HOH . 
E 4 HOH A 5 379 379 HOH HOH . 
E 4 HOH A 6 380 380 HOH HOH . 
E 4 HOH A 7 381 381 HOH HOH . 
E 4 HOH A 8 382 382 HOH HOH . 
E 4 HOH A 9 383 383 HOH HOH . 
E 4 HOH A 10 384 384 HOH HOH . 
E 4 HOH A 11 385 385 HOH HOH . 
E 4 HOH A 12 386 386 HOH HOH . 
E 4 HOH A 13 387 387 HOH HOH . 
E 4 HOH A 14 388 388 HOH HOH . 
E 4 HOH A 15 389 389 HOH HOH . 
E 4 HOH A 16 390 390 HOH HOH . 
E 4 HOH A 17 391 391 HOH HOH . 
E 4 HOH A 18 392 392 HOH HOH . 
E 4 HOH A 19 393 393 HOH HOH . 
E 4 HOH A 20 394 394 HOH HOH . 
E 4 HOH A 21 395 395 HOH HOH . 
E 4 HOH A 22 396 396 HOH HOH . 
E 4 HOH A 23 397 397 HOH HOH . 
E 4 HOH A 24 398 398 HOH HOH . 
E 4 HOH A 25 399 399 HOH HOH . 
E 4 HOH A 26 400 400 HOH HOH . 
E 4 HOH A 27 401 401 HOH HOH . 
E 4 HOH A 28 402 402 HOH HOH . 
E 4 HOH A 29 403 403 HOH HOH . 
E 4 HOH A 30 404 404 HOH HOH . 
E 4 HOH A 31 405 405 HOH HOH . 
E 4 HOH A 32 406 406 HOH HOH . 
E 4 HOH A 33 407 407 HOH HOH . 
E 4 HOH A 34 408 408 HOH HOH . 
E 4 HOH A 35 409 409 HOH HOH . 
E 4 HOH A 36 410 410 HOH HOH . 
E 4 HOH A 37 411 411 HOH HOH . 
E 4 HOH A 38 412 412 HOH HOH . 
E 4 HOH A 39 413 413 HOH HOH . 
E 4 HOH A 40 414 414 HOH HOH . 
E 4 HOH A 41 415 415 HOH HOH . 
E 4 HOH A 42 416 416 HOH HOH . 
E 4 HOH A 43 417 417 HOH HOH . 
E 4 HOH A 44 418 418 HOH HOH . 
E 4 HOH A 45 419 419 HOH HOH . 
E 4 HOH A 46 420 420 HOH HOH . 
E 4 HOH A 47 421 421 HOH HOH . 
E 4 HOH A 48 422 422 HOH HOH . 
E 4 HOH A 49 423 423 HOH HOH . 
E 4 HOH A 50 424 424 HOH HOH . 
E 4 HOH A 51 425 425 HOH HOH . 
E 4 HOH A 52 426 426 HOH HOH . 
E 4 HOH A 53 427 427 HOH HOH . 
E 4 HOH A 54 428 428 HOH HOH . 
E 4 HOH A 55 429 429 HOH HOH . 
E 4 HOH A 56 430 430 HOH HOH . 
E 4 HOH A 57 431 431 HOH HOH . 
E 4 HOH A 58 432 432 HOH HOH . 
E 4 HOH A 59 433 433 HOH HOH . 
E 4 HOH A 60 434 434 HOH HOH . 
E 4 HOH A 61 435 435 HOH HOH . 
E 4 HOH A 62 436 436 HOH HOH . 
E 4 HOH A 63 437 437 HOH HOH . 
E 4 HOH A 64 438 438 HOH HOH . 
E 4 HOH A 65 439 439 HOH HOH . 
E 4 HOH A 66 440 440 HOH HOH . 
E 4 HOH A 67 441 441 HOH HOH . 
E 4 HOH A 68 442 442 HOH HOH . 
E 4 HOH A 69 443 443 HOH HOH . 
E 4 HOH A 70 444 444 HOH HOH . 
E 4 HOH A 71 445 445 HOH HOH . 
E 4 HOH A 72 446 446 HOH HOH . 
E 4 HOH A 73 447 447 HOH HOH . 
E 4 HOH A 74 448 448 HOH HOH . 
E 4 HOH A 75 449 449 HOH HOH . 
E 4 HOH A 76 450 450 HOH HOH . 
E 4 HOH A 77 451 451 HOH HOH . 
E 4 HOH A 78 452 452 HOH HOH . 
E 4 HOH A 79 453 453 HOH HOH . 
E 4 HOH A 80 454 454 HOH HOH . 
E 4 HOH A 81 455 455 HOH HOH . 
E 4 HOH A 82 456 456 HOH HOH . 
E 4 HOH A 83 457 457 HOH HOH . 
E 4 HOH A 84 458 458 HOH HOH . 
E 4 HOH A 85 459 459 HOH HOH . 
E 4 HOH A 86 460 460 HOH HOH . 
E 4 HOH A 87 461 461 HOH HOH . 
E 4 HOH A 88 462 462 HOH HOH . 
E 4 HOH A 89 463 463 HOH HOH . 
E 4 HOH A 90 464 464 HOH HOH . 
E 4 HOH A 91 465 465 HOH HOH . 
E 4 HOH A 92 466 466 HOH HOH . 
E 4 HOH A 93 467 467 HOH HOH . 
E 4 HOH A 94 468 468 HOH HOH . 
E 4 HOH A 95 469 469 HOH HOH . 
E 4 HOH A 96 470 470 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N AMQ . . . D 3 20.939 20.78 13.346 1 24.2 ? N AMQ 374 A 1 
HETATM 2 C CA AMQ . . . D 3 20.756 19.532 14.166 1 25.16 ? CA AMQ 374 A 1 
HETATM 3 C C AMQ . . . D 3 19.225 19.194 14.299 1 24.94 ? C AMQ 374 A 1 
HETATM 4 O OT1 AMQ . . . D 3 18.418 19.948 13.735 1 24.44 ? OT1 AMQ 374 A 1 
HETATM 5 O OT2 AMQ . . . D 3 18.904 18.184 14.96 1 26.61 ? OT2 AMQ 374 A 1 
HETATM 6 C CB AMQ . . . D 3 21.433 19.732 15.552 1 24.79 ? CB AMQ 374 A 1 
HETATM 7 C CG AMQ . . . D 3 22.919 20.023 15.445 1 28.33 ? CG AMQ 374 A 1 
HETATM 8 C CD1 AMQ . . . D 3 23.977 19.077 15.303 1 30.13 ? CD1 AMQ 374 A 1 
HETATM 9 C CD2 AMQ . . . D 3 23.627 21.188 15.45 1 29.42 ? CD2 AMQ 374 A 1 
HETATM 10 C CE2 AMQ . . . D 3 23.281 22.637 15.559 1 30.31 ? CE2 AMQ 374 A 1 
HETATM 11 O OE1 AMQ . . . D 3 23.64 17.797 15.26 1 29.87 ? OE1 AMQ 374 A 1 
HETATM 12 N NE1 AMQ . . . D 3 25.204 19.511 15.221 1 30.98 ? NE1 AMQ 374 A 1 
HETATM 13 O OE2 AMQ . . . D 3 24.98 20.933 15.32 1 30.83 ? OE2 AMQ 374 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#