data_3DP9 # _model_server_result.job_id s2GMEg0G7HXASMqcSdutLg _model_server_result.datetime_utc '2024-11-08 16:14:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 3DP9 # _exptl.entry_id 3DP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.35 _cell.angle_gamma 90 _cell.entry_id 3DP9 _cell.length_a 67.738 _cell.length_b 54.332 _cell.length_c 69.786 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DP9 _atom_sites.fract_transf_matrix[1][1] 0.014763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006994 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BIG A 1 301 301 BIG BIG . D 3 IOD C 1 300 300 IOD IOD . E 2 BIG C 1 301 301 BIG BIG . F 4 HOH A 1 302 2 HOH HOH . F 4 HOH A 2 303 4 HOH HOH . F 4 HOH A 3 304 5 HOH HOH . F 4 HOH A 4 305 6 HOH HOH . F 4 HOH A 5 306 8 HOH HOH . F 4 HOH A 6 307 9 HOH HOH . F 4 HOH A 7 308 10 HOH HOH . F 4 HOH A 8 309 11 HOH HOH . F 4 HOH A 9 310 13 HOH HOH . F 4 HOH A 10 311 14 HOH HOH . F 4 HOH A 11 312 15 HOH HOH . F 4 HOH A 12 313 16 HOH HOH . F 4 HOH A 13 314 17 HOH HOH . F 4 HOH A 14 315 18 HOH HOH . F 4 HOH A 15 316 22 HOH HOH . F 4 HOH A 16 317 27 HOH HOH . F 4 HOH A 17 318 28 HOH HOH . F 4 HOH A 18 319 29 HOH HOH . F 4 HOH A 19 320 30 HOH HOH . F 4 HOH A 20 321 32 HOH HOH . F 4 HOH A 21 322 33 HOH HOH . F 4 HOH A 22 323 35 HOH HOH . F 4 HOH A 23 324 38 HOH HOH . F 4 HOH A 24 325 39 HOH HOH . F 4 HOH A 25 326 40 HOH HOH . F 4 HOH A 26 327 41 HOH HOH . F 4 HOH A 27 328 44 HOH HOH . F 4 HOH A 28 329 45 HOH HOH . F 4 HOH A 29 330 46 HOH HOH . F 4 HOH A 30 331 47 HOH HOH . F 4 HOH A 31 332 49 HOH HOH . F 4 HOH A 32 333 50 HOH HOH . F 4 HOH A 33 334 51 HOH HOH . F 4 HOH A 34 335 59 HOH HOH . F 4 HOH A 35 336 60 HOH HOH . F 4 HOH A 36 337 61 HOH HOH . F 4 HOH A 37 338 63 HOH HOH . F 4 HOH A 38 339 65 HOH HOH . G 4 HOH C 1 302 1 HOH HOH . G 4 HOH C 2 303 3 HOH HOH . G 4 HOH C 3 304 7 HOH HOH . G 4 HOH C 4 305 12 HOH HOH . G 4 HOH C 5 306 19 HOH HOH . G 4 HOH C 6 307 20 HOH HOH . G 4 HOH C 7 308 21 HOH HOH . G 4 HOH C 8 309 23 HOH HOH . G 4 HOH C 9 310 24 HOH HOH . G 4 HOH C 10 311 25 HOH HOH . G 4 HOH C 11 312 26 HOH HOH . G 4 HOH C 12 313 31 HOH HOH . G 4 HOH C 13 314 34 HOH HOH . G 4 HOH C 14 315 36 HOH HOH . G 4 HOH C 15 316 37 HOH HOH . G 4 HOH C 16 317 42 HOH HOH . G 4 HOH C 17 318 43 HOH HOH . G 4 HOH C 18 319 48 HOH HOH . G 4 HOH C 19 320 52 HOH HOH . G 4 HOH C 20 321 53 HOH HOH . G 4 HOH C 21 322 54 HOH HOH . G 4 HOH C 22 323 55 HOH HOH . G 4 HOH C 23 324 56 HOH HOH . G 4 HOH C 24 325 57 HOH HOH . G 4 HOH C 25 326 58 HOH HOH . G 4 HOH C 26 327 62 HOH HOH . G 4 HOH C 27 328 64 HOH HOH . G 4 HOH C 28 329 66 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 43.774 _atom_site.Cartn_y -1.523 _atom_site.Cartn_z 13.399 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 300 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #