data_3DPC
#
_model_server_result.job_id            HQHMShVjkvLh3jwqg9skTg 
_model_server_result.datetime_utc      '2025-04-04 08:01:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dpc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":457}' 
#
_entry.id    3DPC 
#
_exptl.entry_id    3DPC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DPC 
_cell.length_a            64.862 
_cell.length_b            107.74 
_cell.length_c            148.389 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DPC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 168 A CYS 168 1_555 A SG CYS 178 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 286 A CYS 286 1_555 A SG CYS 336 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 168 B CYS 168 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 286 B CYS 286 1_555 B SG CYS 336 B CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
covale ? covale1 C C ALA 2 C ALA 2 1_555 C N TPO 3 C TPO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 C C TPO 3 C TPO 3 1_555 C N PRO 4 C PRO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 359 n n 
C C2 TRS sing 360 n n 
C C3 TRS sing 361 n n 
C N TRS sing 362 n n 
C1 O1 TRS sing 363 n n 
C1 H11 TRS sing 364 n n 
C1 H12 TRS sing 365 n n 
C2 O2 TRS sing 366 n n 
C2 H21 TRS sing 367 n n 
C2 H22 TRS sing 368 n n 
C3 O3 TRS sing 369 n n 
C3 H31 TRS sing 370 n n 
C3 H32 TRS sing 371 n n 
N HN1 TRS sing 372 n n 
N HN2 TRS sing 373 n n 
N HN3 TRS sing 374 n n 
O1 HO1 TRS sing 375 n n 
O2 HO2 TRS sing 376 n n 
O3 HO3 TRS sing 377 n n 
#
_atom_sites.entry_id                     3DPC 
_atom_sites.fract_transf_matrix[1][1]    0.015417 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009282 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 PO4 A 1 456 456 PO4 PO4 . 
E 4 TRS A 1 457 457 TRS TRS . 
F 5 HOH A 1 458 458 HOH HOH . 
F 5 HOH A 2 459 459 HOH HOH . 
F 5 HOH A 3 460 460 HOH HOH . 
F 5 HOH A 4 461 461 HOH HOH . 
F 5 HOH A 5 462 462 HOH HOH . 
F 5 HOH A 6 463 463 HOH HOH . 
F 5 HOH A 7 464 464 HOH HOH . 
F 5 HOH A 8 465 465 HOH HOH . 
F 5 HOH A 9 466 466 HOH HOH . 
F 5 HOH A 10 467 467 HOH HOH . 
F 5 HOH A 11 468 468 HOH HOH . 
F 5 HOH A 12 469 469 HOH HOH . 
F 5 HOH A 13 470 470 HOH HOH . 
F 5 HOH A 14 471 471 HOH HOH . 
F 5 HOH A 15 472 472 HOH HOH . 
F 5 HOH A 16 473 473 HOH HOH . 
F 5 HOH A 17 474 474 HOH HOH . 
F 5 HOH A 18 475 475 HOH HOH . 
F 5 HOH A 19 476 476 HOH HOH . 
F 5 HOH A 20 477 477 HOH HOH . 
F 5 HOH A 21 478 478 HOH HOH . 
F 5 HOH A 22 479 479 HOH HOH . 
F 5 HOH A 23 480 480 HOH HOH . 
F 5 HOH A 24 481 481 HOH HOH . 
F 5 HOH A 25 482 482 HOH HOH . 
F 5 HOH A 26 483 483 HOH HOH . 
F 5 HOH A 27 484 484 HOH HOH . 
F 5 HOH A 28 485 485 HOH HOH . 
F 5 HOH A 29 486 486 HOH HOH . 
F 5 HOH A 30 487 487 HOH HOH . 
F 5 HOH A 31 488 488 HOH HOH . 
F 5 HOH A 32 489 489 HOH HOH . 
F 5 HOH A 33 490 490 HOH HOH . 
F 5 HOH A 34 491 491 HOH HOH . 
F 5 HOH A 35 492 492 HOH HOH . 
F 5 HOH A 36 493 493 HOH HOH . 
F 5 HOH A 37 494 494 HOH HOH . 
F 5 HOH A 38 495 495 HOH HOH . 
F 5 HOH A 39 496 496 HOH HOH . 
F 5 HOH A 40 497 497 HOH HOH . 
F 5 HOH A 41 498 498 HOH HOH . 
F 5 HOH A 42 499 499 HOH HOH . 
F 5 HOH A 43 500 500 HOH HOH . 
F 5 HOH A 44 501 501 HOH HOH . 
F 5 HOH A 45 502 502 HOH HOH . 
F 5 HOH A 46 503 503 HOH HOH . 
F 5 HOH A 47 504 504 HOH HOH . 
F 5 HOH A 48 505 505 HOH HOH . 
F 5 HOH A 49 506 506 HOH HOH . 
F 5 HOH A 50 507 507 HOH HOH . 
F 5 HOH A 51 508 508 HOH HOH . 
F 5 HOH A 52 509 509 HOH HOH . 
F 5 HOH A 53 510 510 HOH HOH . 
F 5 HOH A 54 511 511 HOH HOH . 
F 5 HOH A 55 512 512 HOH HOH . 
F 5 HOH A 56 513 513 HOH HOH . 
F 5 HOH A 57 514 514 HOH HOH . 
F 5 HOH A 58 515 515 HOH HOH . 
F 5 HOH A 59 516 516 HOH HOH . 
F 5 HOH A 60 517 517 HOH HOH . 
F 5 HOH A 61 518 518 HOH HOH . 
F 5 HOH A 62 519 519 HOH HOH . 
F 5 HOH A 63 520 520 HOH HOH . 
F 5 HOH A 64 521 521 HOH HOH . 
F 5 HOH A 65 522 522 HOH HOH . 
F 5 HOH A 66 523 523 HOH HOH . 
F 5 HOH A 67 524 524 HOH HOH . 
F 5 HOH A 68 525 525 HOH HOH . 
F 5 HOH A 69 526 526 HOH HOH . 
F 5 HOH A 70 527 527 HOH HOH . 
F 5 HOH A 71 528 528 HOH HOH . 
F 5 HOH A 72 529 529 HOH HOH . 
F 5 HOH A 73 530 530 HOH HOH . 
F 5 HOH A 74 531 531 HOH HOH . 
F 5 HOH A 75 532 532 HOH HOH . 
F 5 HOH A 76 533 533 HOH HOH . 
F 5 HOH A 77 534 534 HOH HOH . 
F 5 HOH A 78 535 535 HOH HOH . 
F 5 HOH A 79 536 536 HOH HOH . 
F 5 HOH A 80 537 537 HOH HOH . 
F 5 HOH A 81 538 538 HOH HOH . 
F 5 HOH A 82 539 539 HOH HOH . 
F 5 HOH A 83 540 540 HOH HOH . 
F 5 HOH A 84 541 541 HOH HOH . 
F 5 HOH A 85 542 542 HOH HOH . 
F 5 HOH A 86 543 543 HOH HOH . 
F 5 HOH A 87 544 544 HOH HOH . 
F 5 HOH A 88 545 545 HOH HOH . 
F 5 HOH A 89 546 546 HOH HOH . 
F 5 HOH A 90 547 547 HOH HOH . 
F 5 HOH A 91 548 548 HOH HOH . 
F 5 HOH A 92 549 549 HOH HOH . 
F 5 HOH A 93 550 550 HOH HOH . 
F 5 HOH A 94 551 551 HOH HOH . 
F 5 HOH A 95 552 552 HOH HOH . 
F 5 HOH A 96 553 553 HOH HOH . 
F 5 HOH A 97 554 554 HOH HOH . 
G 5 HOH B 1 456 456 HOH HOH . 
G 5 HOH B 2 457 457 HOH HOH . 
G 5 HOH B 3 458 458 HOH HOH . 
G 5 HOH B 4 459 459 HOH HOH . 
G 5 HOH B 5 460 460 HOH HOH . 
G 5 HOH B 6 461 461 HOH HOH . 
G 5 HOH B 7 462 462 HOH HOH . 
G 5 HOH B 8 463 463 HOH HOH . 
G 5 HOH B 9 464 464 HOH HOH . 
G 5 HOH B 10 465 465 HOH HOH . 
G 5 HOH B 11 466 466 HOH HOH . 
G 5 HOH B 12 467 467 HOH HOH . 
G 5 HOH B 13 468 468 HOH HOH . 
G 5 HOH B 14 469 469 HOH HOH . 
G 5 HOH B 15 470 470 HOH HOH . 
G 5 HOH B 16 471 471 HOH HOH . 
G 5 HOH B 17 472 472 HOH HOH . 
G 5 HOH B 18 473 473 HOH HOH . 
G 5 HOH B 19 474 474 HOH HOH . 
G 5 HOH B 20 475 475 HOH HOH . 
G 5 HOH B 21 476 476 HOH HOH . 
G 5 HOH B 22 477 477 HOH HOH . 
G 5 HOH B 23 478 478 HOH HOH . 
G 5 HOH B 24 479 479 HOH HOH . 
G 5 HOH B 25 480 480 HOH HOH . 
G 5 HOH B 26 481 481 HOH HOH . 
G 5 HOH B 27 482 482 HOH HOH . 
G 5 HOH B 28 483 483 HOH HOH . 
G 5 HOH B 29 484 484 HOH HOH . 
G 5 HOH B 30 485 485 HOH HOH . 
G 5 HOH B 31 486 486 HOH HOH . 
G 5 HOH B 32 487 487 HOH HOH . 
G 5 HOH B 33 488 488 HOH HOH . 
G 5 HOH B 34 489 489 HOH HOH . 
G 5 HOH B 35 490 490 HOH HOH . 
G 5 HOH B 36 491 491 HOH HOH . 
G 5 HOH B 37 492 492 HOH HOH . 
G 5 HOH B 38 493 493 HOH HOH . 
G 5 HOH B 39 494 494 HOH HOH . 
G 5 HOH B 40 495 495 HOH HOH . 
G 5 HOH B 41 496 496 HOH HOH . 
G 5 HOH B 42 497 497 HOH HOH . 
G 5 HOH B 43 498 498 HOH HOH . 
G 5 HOH B 44 499 499 HOH HOH . 
G 5 HOH B 45 500 500 HOH HOH . 
G 5 HOH B 46 501 501 HOH HOH . 
G 5 HOH B 47 502 502 HOH HOH . 
G 5 HOH B 48 503 503 HOH HOH . 
G 5 HOH B 49 504 504 HOH HOH . 
G 5 HOH B 50 505 505 HOH HOH . 
G 5 HOH B 51 506 506 HOH HOH . 
G 5 HOH B 52 507 507 HOH HOH . 
G 5 HOH B 53 508 508 HOH HOH . 
G 5 HOH B 54 509 509 HOH HOH . 
G 5 HOH B 55 510 510 HOH HOH . 
G 5 HOH B 56 511 511 HOH HOH . 
G 5 HOH B 57 512 512 HOH HOH . 
G 5 HOH B 58 513 513 HOH HOH . 
G 5 HOH B 59 514 514 HOH HOH . 
G 5 HOH B 60 515 515 HOH HOH . 
G 5 HOH B 61 516 516 HOH HOH . 
G 5 HOH B 62 517 517 HOH HOH . 
G 5 HOH B 63 518 518 HOH HOH . 
G 5 HOH B 64 519 519 HOH HOH . 
G 5 HOH B 65 520 520 HOH HOH . 
G 5 HOH B 66 521 521 HOH HOH . 
G 5 HOH B 67 522 522 HOH HOH . 
G 5 HOH B 68 523 523 HOH HOH . 
G 5 HOH B 69 524 524 HOH HOH . 
G 5 HOH B 70 525 525 HOH HOH . 
G 5 HOH B 71 526 526 HOH HOH . 
G 5 HOH B 72 527 527 HOH HOH . 
G 5 HOH B 73 528 528 HOH HOH . 
G 5 HOH B 74 529 529 HOH HOH . 
G 5 HOH B 75 530 530 HOH HOH . 
G 5 HOH B 76 531 531 HOH HOH . 
G 5 HOH B 77 532 532 HOH HOH . 
G 5 HOH B 78 533 533 HOH HOH . 
G 5 HOH B 79 534 534 HOH HOH . 
G 5 HOH B 80 535 535 HOH HOH . 
G 5 HOH B 81 536 536 HOH HOH . 
G 5 HOH B 82 537 537 HOH HOH . 
G 5 HOH B 83 538 538 HOH HOH . 
G 5 HOH B 84 539 539 HOH HOH . 
G 5 HOH B 85 540 540 HOH HOH . 
G 5 HOH B 86 541 541 HOH HOH . 
G 5 HOH B 87 542 542 HOH HOH . 
G 5 HOH B 88 543 543 HOH HOH . 
G 5 HOH B 89 544 544 HOH HOH . 
G 5 HOH B 90 545 545 HOH HOH . 
G 5 HOH B 91 546 546 HOH HOH . 
G 5 HOH B 92 547 547 HOH HOH . 
G 5 HOH B 93 548 548 HOH HOH . 
G 5 HOH B 94 549 549 HOH HOH . 
G 5 HOH B 95 550 550 HOH HOH . 
G 5 HOH B 96 551 551 HOH HOH . 
G 5 HOH B 97 552 552 HOH HOH . 
G 5 HOH B 98 553 554 HOH HOH . 
G 5 HOH B 99 554 555 HOH HOH . 
G 5 HOH B 100 555 556 HOH HOH . 
G 5 HOH B 101 556 557 HOH HOH . 
G 5 HOH B 102 557 558 HOH HOH . 
G 5 HOH B 103 558 559 HOH HOH . 
G 5 HOH B 104 559 560 HOH HOH . 
G 5 HOH B 105 560 561 HOH HOH . 
G 5 HOH B 106 561 562 HOH HOH . 
G 5 HOH B 107 562 563 HOH HOH . 
G 5 HOH B 108 563 564 HOH HOH . 
G 5 HOH B 109 564 565 HOH HOH . 
G 5 HOH B 110 565 566 HOH HOH . 
G 5 HOH B 111 566 567 HOH HOH . 
G 5 HOH B 112 567 568 HOH HOH . 
G 5 HOH B 113 568 569 HOH HOH . 
G 5 HOH B 114 569 570 HOH HOH . 
G 5 HOH B 115 570 571 HOH HOH . 
G 5 HOH B 116 571 572 HOH HOH . 
G 5 HOH B 117 572 573 HOH HOH . 
G 5 HOH B 118 573 574 HOH HOH . 
G 5 HOH B 119 574 575 HOH HOH . 
G 5 HOH B 120 575 576 HOH HOH . 
G 5 HOH B 121 576 577 HOH HOH . 
G 5 HOH B 122 577 578 HOH HOH . 
G 5 HOH B 123 578 579 HOH HOH . 
H 5 HOH C 1 11 553 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . E 4 31.15 -7.191 -7.81 1 44.22 ? C TRS 457 A 1 
HETATM 2 C C1 TRS . . . E 4 30.445 -8.214 -8.621 1 44.35 ? C1 TRS 457 A 1 
HETATM 3 C C2 TRS . . . E 4 31.849 -8.048 -6.758 1 42.36 ? C2 TRS 457 A 1 
HETATM 4 C C3 TRS . . . E 4 32.347 -6.542 -8.513 1 45.77 ? C3 TRS 457 A 1 
HETATM 5 N N TRS . . . E 4 30.345 -6.305 -6.886 1 43.39 ? N TRS 457 A 1 
HETATM 6 O O1 TRS . . . E 4 30.1 -7.663 -9.916 1 46.04 ? O1 TRS 457 A 1 
HETATM 7 O O2 TRS . . . E 4 30.882 -8.738 -5.959 1 41.23 ? O2 TRS 457 A 1 
HETATM 8 O O3 TRS . . . E 4 32.037 -5.201 -8.879 1 48.54 ? O3 TRS 457 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#