data_3DPK # _model_server_result.job_id HGAXga9gGyD7a9XsjZxXRw _model_server_result.datetime_utc '2024-10-11 01:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3}' # _entry.id 3DPK # _exptl.entry_id 3DPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DPK _cell.length_a 80.95 _cell.length_b 80.95 _cell.length_c 145.42 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 364 n n S O2 SO4 doub 365 n n S O3 SO4 sing 366 n n S O4 SO4 sing 367 n n # _atom_sites.entry_id 3DPK _atom_sites.fract_transf_matrix[1][1] 0.012353 _atom_sites.fract_transf_matrix[1][2] 0.007132 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 2 SO4 A 1 2 2 SO4 SO4 . D 2 SO4 A 1 3 3 SO4 SO4 . E 3 8C5 A 1 923 1 8C5 8C5 . F 4 HOH A 1 924 1 HOH HOH . F 4 HOH A 2 925 2 HOH HOH . F 4 HOH A 3 926 3 HOH HOH . F 4 HOH A 4 927 4 HOH HOH . F 4 HOH A 5 928 5 HOH HOH . F 4 HOH A 6 929 6 HOH HOH . F 4 HOH A 7 930 7 HOH HOH . F 4 HOH A 8 931 8 HOH HOH . F 4 HOH A 9 932 9 HOH HOH . F 4 HOH A 10 933 10 HOH HOH . F 4 HOH A 11 934 11 HOH HOH . F 4 HOH A 12 935 12 HOH HOH . F 4 HOH A 13 936 13 HOH HOH . F 4 HOH A 14 937 14 HOH HOH . F 4 HOH A 15 938 15 HOH HOH . F 4 HOH A 16 939 16 HOH HOH . F 4 HOH A 17 940 17 HOH HOH . F 4 HOH A 18 941 18 HOH HOH . F 4 HOH A 19 942 19 HOH HOH . F 4 HOH A 20 943 20 HOH HOH . F 4 HOH A 21 944 21 HOH HOH . F 4 HOH A 22 945 22 HOH HOH . F 4 HOH A 23 946 23 HOH HOH . F 4 HOH A 24 947 24 HOH HOH . F 4 HOH A 25 948 25 HOH HOH . F 4 HOH A 26 949 26 HOH HOH . F 4 HOH A 27 950 27 HOH HOH . F 4 HOH A 28 951 28 HOH HOH . F 4 HOH A 29 952 29 HOH HOH . F 4 HOH A 30 953 30 HOH HOH . F 4 HOH A 31 954 31 HOH HOH . F 4 HOH A 32 955 32 HOH HOH . F 4 HOH A 33 956 33 HOH HOH . F 4 HOH A 34 957 34 HOH HOH . F 4 HOH A 35 958 35 HOH HOH . F 4 HOH A 36 959 36 HOH HOH . F 4 HOH A 37 960 37 HOH HOH . F 4 HOH A 38 961 38 HOH HOH . F 4 HOH A 39 962 41 HOH HOH . F 4 HOH A 40 963 42 HOH HOH . F 4 HOH A 41 964 43 HOH HOH . F 4 HOH A 42 965 44 HOH HOH . F 4 HOH A 43 966 45 HOH HOH . F 4 HOH A 44 967 46 HOH HOH . F 4 HOH A 45 968 47 HOH HOH . F 4 HOH A 46 969 48 HOH HOH . F 4 HOH A 47 970 49 HOH HOH . F 4 HOH A 48 971 50 HOH HOH . F 4 HOH A 49 972 51 HOH HOH . F 4 HOH A 50 973 52 HOH HOH . F 4 HOH A 51 974 53 HOH HOH . F 4 HOH A 52 975 55 HOH HOH . F 4 HOH A 53 976 56 HOH HOH . F 4 HOH A 54 977 58 HOH HOH . F 4 HOH A 55 978 60 HOH HOH . F 4 HOH A 56 979 61 HOH HOH . F 4 HOH A 57 980 63 HOH HOH . F 4 HOH A 58 981 64 HOH HOH . F 4 HOH A 59 982 65 HOH HOH . F 4 HOH A 60 983 66 HOH HOH . F 4 HOH A 61 984 67 HOH HOH . F 4 HOH A 62 985 68 HOH HOH . F 4 HOH A 63 986 70 HOH HOH . F 4 HOH A 64 987 71 HOH HOH . F 4 HOH A 65 988 72 HOH HOH . F 4 HOH A 66 989 73 HOH HOH . F 4 HOH A 67 990 74 HOH HOH . F 4 HOH A 68 991 75 HOH HOH . F 4 HOH A 69 992 76 HOH HOH . F 4 HOH A 70 993 77 HOH HOH . F 4 HOH A 71 994 78 HOH HOH . F 4 HOH A 72 995 79 HOH HOH . F 4 HOH A 73 996 80 HOH HOH . F 4 HOH A 74 997 81 HOH HOH . F 4 HOH A 75 998 82 HOH HOH . F 4 HOH A 76 999 83 HOH HOH . F 4 HOH A 77 1000 84 HOH HOH . F 4 HOH A 78 1001 86 HOH HOH . F 4 HOH A 79 1002 87 HOH HOH . F 4 HOH A 80 1003 88 HOH HOH . F 4 HOH A 81 1004 89 HOH HOH . F 4 HOH A 82 1005 90 HOH HOH . F 4 HOH A 83 1006 91 HOH HOH . F 4 HOH A 84 1007 92 HOH HOH . F 4 HOH A 85 1008 93 HOH HOH . F 4 HOH A 86 1009 94 HOH HOH . F 4 HOH A 87 1010 95 HOH HOH . F 4 HOH A 88 1011 98 HOH HOH . F 4 HOH A 89 1012 99 HOH HOH . F 4 HOH A 90 1013 100 HOH HOH . F 4 HOH A 91 1014 101 HOH HOH . F 4 HOH A 92 1015 102 HOH HOH . F 4 HOH A 93 1016 103 HOH HOH . F 4 HOH A 94 1017 104 HOH HOH . F 4 HOH A 95 1018 105 HOH HOH . F 4 HOH A 96 1019 109 HOH HOH . F 4 HOH A 97 1020 111 HOH HOH . F 4 HOH A 98 1021 113 HOH HOH . F 4 HOH A 99 1022 114 HOH HOH . F 4 HOH A 100 1023 116 HOH HOH . F 4 HOH A 101 1024 117 HOH HOH . F 4 HOH A 102 1025 118 HOH HOH . F 4 HOH A 103 1026 119 HOH HOH . F 4 HOH A 104 1027 120 HOH HOH . F 4 HOH A 105 1028 121 HOH HOH . F 4 HOH A 106 1029 124 HOH HOH . F 4 HOH A 107 1030 125 HOH HOH . F 4 HOH A 108 1031 127 HOH HOH . F 4 HOH A 109 1032 128 HOH HOH . F 4 HOH A 110 1033 130 HOH HOH . F 4 HOH A 111 1034 131 HOH HOH . F 4 HOH A 112 1035 132 HOH HOH . F 4 HOH A 113 1036 133 HOH HOH . F 4 HOH A 114 1037 134 HOH HOH . F 4 HOH A 115 1038 135 HOH HOH . F 4 HOH A 116 1039 136 HOH HOH . F 4 HOH A 117 1040 137 HOH HOH . F 4 HOH A 118 1041 138 HOH HOH . F 4 HOH A 119 1042 139 HOH HOH . F 4 HOH A 120 1043 140 HOH HOH . F 4 HOH A 121 1044 145 HOH HOH . F 4 HOH A 122 1045 146 HOH HOH . F 4 HOH A 123 1046 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 2 27.215 53.699 0.725 1 42.68 ? S SO4 3 A 1 HETATM 2 O O1 SO4 . . . D 2 28.175 54.791 0.59 1 48.41 ? O1 SO4 3 A 1 HETATM 3 O O2 SO4 . . . D 2 26.762 53.301 -0.607 1 27.58 ? O2 SO4 3 A 1 HETATM 4 O O3 SO4 . . . D 2 27.9 52.646 1.486 1 33.77 ? O3 SO4 3 A 1 HETATM 5 O O4 SO4 . . . D 2 26.021 54.142 1.45 1 41.4 ? O4 SO4 3 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #