data_3DPS
#
_model_server_result.job_id            5J5efIh2c_4mNrf3egRNfg 
_model_server_result.datetime_utc      '2024-11-28 17:48:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dps 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":5001}' 
#
_entry.id    3DPS 
#
_exptl.entry_id    3DPS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DPS 
_cell.length_a            150.86 
_cell.length_b            150.86 
_cell.length_c            47.84 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DPS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 150.86 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 75.43 130.648592 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3DPS 
_atom_sites.fract_transf_matrix[1][1]    0.006629 
_atom_sites.fract_transf_matrix[1][2]    0.003827 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007654 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL F 1 5001 5001 GOL GOL . 
D 3 HOH A 1 3002 3002 HOH HOH . 
D 3 HOH A 2 3005 3005 HOH HOH . 
D 3 HOH A 3 3006 3006 HOH HOH . 
D 3 HOH A 4 3008 3008 HOH HOH . 
D 3 HOH A 5 3010 3010 HOH HOH . 
D 3 HOH A 6 3012 3012 HOH HOH . 
D 3 HOH A 7 3014 3014 HOH HOH . 
D 3 HOH A 8 3015 3015 HOH HOH . 
D 3 HOH A 9 3016 3016 HOH HOH . 
D 3 HOH A 10 3017 3017 HOH HOH . 
D 3 HOH A 11 3018 3018 HOH HOH . 
D 3 HOH A 12 3019 3019 HOH HOH . 
D 3 HOH A 13 3020 3020 HOH HOH . 
D 3 HOH A 14 3021 3021 HOH HOH . 
D 3 HOH A 15 3023 3023 HOH HOH . 
D 3 HOH A 16 3026 3026 HOH HOH . 
D 3 HOH A 17 3028 3028 HOH HOH . 
D 3 HOH A 18 3029 3029 HOH HOH . 
D 3 HOH A 19 3034 3034 HOH HOH . 
D 3 HOH A 20 3037 3037 HOH HOH . 
D 3 HOH A 21 3038 3038 HOH HOH . 
D 3 HOH A 22 3042 3042 HOH HOH . 
D 3 HOH A 23 3044 3044 HOH HOH . 
D 3 HOH A 24 3047 3047 HOH HOH . 
D 3 HOH A 25 3048 3048 HOH HOH . 
D 3 HOH A 26 3049 3049 HOH HOH . 
D 3 HOH A 27 3051 3051 HOH HOH . 
D 3 HOH A 28 3053 3053 HOH HOH . 
D 3 HOH A 29 3057 3057 HOH HOH . 
D 3 HOH A 30 3060 3060 HOH HOH . 
D 3 HOH A 31 3061 3061 HOH HOH . 
D 3 HOH A 32 3064 3064 HOH HOH . 
D 3 HOH A 33 3065 3065 HOH HOH . 
D 3 HOH A 34 3066 3066 HOH HOH . 
D 3 HOH A 35 3067 3067 HOH HOH . 
D 3 HOH A 36 3068 3068 HOH HOH . 
D 3 HOH A 37 3069 3069 HOH HOH . 
D 3 HOH A 38 3071 3071 HOH HOH . 
D 3 HOH A 39 3073 3073 HOH HOH . 
D 3 HOH A 40 3076 3076 HOH HOH . 
D 3 HOH A 41 3077 3077 HOH HOH . 
D 3 HOH A 42 3080 3080 HOH HOH . 
D 3 HOH A 43 3082 3082 HOH HOH . 
D 3 HOH A 44 3083 3083 HOH HOH . 
D 3 HOH A 45 3084 3084 HOH HOH . 
D 3 HOH A 46 3085 3085 HOH HOH . 
D 3 HOH A 47 3086 3086 HOH HOH . 
D 3 HOH A 48 3089 3089 HOH HOH . 
D 3 HOH A 49 3092 3092 HOH HOH . 
D 3 HOH A 50 3093 3093 HOH HOH . 
D 3 HOH A 51 3095 3095 HOH HOH . 
D 3 HOH A 52 3096 3096 HOH HOH . 
D 3 HOH A 53 3097 3097 HOH HOH . 
D 3 HOH A 54 3098 3098 HOH HOH . 
D 3 HOH A 55 3099 3099 HOH HOH . 
D 3 HOH A 56 3100 3100 HOH HOH . 
D 3 HOH A 57 3104 3104 HOH HOH . 
D 3 HOH A 58 3107 3107 HOH HOH . 
D 3 HOH A 59 3108 3108 HOH HOH . 
D 3 HOH A 60 3109 3109 HOH HOH . 
D 3 HOH A 61 3111 3111 HOH HOH . 
D 3 HOH A 62 3112 3112 HOH HOH . 
D 3 HOH A 63 3114 3114 HOH HOH . 
D 3 HOH A 64 3115 3115 HOH HOH . 
D 3 HOH A 65 3117 3117 HOH HOH . 
D 3 HOH A 66 3119 3119 HOH HOH . 
D 3 HOH A 67 3120 3120 HOH HOH . 
D 3 HOH A 68 3122 3122 HOH HOH . 
D 3 HOH A 69 3123 3123 HOH HOH . 
D 3 HOH A 70 3128 3128 HOH HOH . 
D 3 HOH A 71 3132 3132 HOH HOH . 
D 3 HOH A 72 3134 3134 HOH HOH . 
D 3 HOH A 73 3135 3135 HOH HOH . 
D 3 HOH A 74 3136 3136 HOH HOH . 
D 3 HOH A 75 3140 3140 HOH HOH . 
D 3 HOH A 76 3148 3148 HOH HOH . 
D 3 HOH A 77 3149 3149 HOH HOH . 
D 3 HOH A 78 3150 3150 HOH HOH . 
D 3 HOH A 79 3154 3154 HOH HOH . 
D 3 HOH A 80 3155 3155 HOH HOH . 
D 3 HOH A 81 3157 3157 HOH HOH . 
D 3 HOH A 82 3158 3158 HOH HOH . 
D 3 HOH A 83 3160 3160 HOH HOH . 
D 3 HOH A 84 3161 3161 HOH HOH . 
D 3 HOH A 85 3165 3165 HOH HOH . 
D 3 HOH A 86 3166 3166 HOH HOH . 
D 3 HOH A 87 3167 3167 HOH HOH . 
D 3 HOH A 88 3170 3170 HOH HOH . 
D 3 HOH A 89 3171 3171 HOH HOH . 
D 3 HOH A 90 3172 3172 HOH HOH . 
D 3 HOH A 91 3176 3176 HOH HOH . 
D 3 HOH A 92 3178 3178 HOH HOH . 
D 3 HOH A 93 3181 3181 HOH HOH . 
D 3 HOH A 94 3186 3186 HOH HOH . 
D 3 HOH A 95 3187 3187 HOH HOH . 
D 3 HOH A 96 3188 3188 HOH HOH . 
D 3 HOH A 97 3189 3189 HOH HOH . 
D 3 HOH A 98 3190 3190 HOH HOH . 
D 3 HOH A 99 3191 3191 HOH HOH . 
D 3 HOH A 100 3193 3193 HOH HOH . 
D 3 HOH A 101 3196 3196 HOH HOH . 
D 3 HOH A 102 3197 3197 HOH HOH . 
D 3 HOH A 103 3198 3198 HOH HOH . 
D 3 HOH A 104 3201 3201 HOH HOH . 
D 3 HOH A 105 3202 3202 HOH HOH . 
D 3 HOH A 106 3204 3204 HOH HOH . 
D 3 HOH A 107 3205 3205 HOH HOH . 
D 3 HOH A 108 3207 3207 HOH HOH . 
D 3 HOH A 109 3211 3211 HOH HOH . 
D 3 HOH A 110 3212 3212 HOH HOH . 
D 3 HOH A 111 3213 3213 HOH HOH . 
D 3 HOH A 112 3214 3214 HOH HOH . 
D 3 HOH A 113 3215 3215 HOH HOH . 
D 3 HOH A 114 3216 3216 HOH HOH . 
D 3 HOH A 115 3218 3218 HOH HOH . 
D 3 HOH A 116 3219 3219 HOH HOH . 
D 3 HOH A 117 3220 3220 HOH HOH . 
D 3 HOH A 118 3224 3224 HOH HOH . 
D 3 HOH A 119 3227 3227 HOH HOH . 
D 3 HOH A 120 3229 3229 HOH HOH . 
D 3 HOH A 121 3230 3230 HOH HOH . 
D 3 HOH A 122 3234 3234 HOH HOH . 
D 3 HOH A 123 3236 3236 HOH HOH . 
D 3 HOH A 124 3240 3240 HOH HOH . 
D 3 HOH A 125 3244 3244 HOH HOH . 
D 3 HOH A 126 3247 3247 HOH HOH . 
D 3 HOH A 127 3251 3251 HOH HOH . 
D 3 HOH A 128 3252 3252 HOH HOH . 
D 3 HOH A 129 3253 3253 HOH HOH . 
D 3 HOH A 130 3256 3256 HOH HOH . 
D 3 HOH A 131 3262 3262 HOH HOH . 
D 3 HOH A 132 3263 3263 HOH HOH . 
D 3 HOH A 133 3266 3266 HOH HOH . 
D 3 HOH A 134 3268 3268 HOH HOH . 
D 3 HOH A 135 3269 3269 HOH HOH . 
D 3 HOH A 136 3271 3271 HOH HOH . 
D 3 HOH A 137 3272 3272 HOH HOH . 
D 3 HOH A 138 3274 3274 HOH HOH . 
D 3 HOH A 139 3278 3278 HOH HOH . 
E 3 HOH F 1 3001 3001 HOH HOH . 
E 3 HOH F 2 3003 3003 HOH HOH . 
E 3 HOH F 3 3004 3004 HOH HOH . 
E 3 HOH F 4 3007 3007 HOH HOH . 
E 3 HOH F 5 3009 3009 HOH HOH . 
E 3 HOH F 6 3011 3011 HOH HOH . 
E 3 HOH F 7 3013 3013 HOH HOH . 
E 3 HOH F 8 3022 3022 HOH HOH . 
E 3 HOH F 9 3024 3024 HOH HOH . 
E 3 HOH F 10 3025 3025 HOH HOH . 
E 3 HOH F 11 3027 3027 HOH HOH . 
E 3 HOH F 12 3030 3030 HOH HOH . 
E 3 HOH F 13 3031 3031 HOH HOH . 
E 3 HOH F 14 3032 3032 HOH HOH . 
E 3 HOH F 15 3033 3033 HOH HOH . 
E 3 HOH F 16 3035 3035 HOH HOH . 
E 3 HOH F 17 3036 3036 HOH HOH . 
E 3 HOH F 18 3039 3039 HOH HOH . 
E 3 HOH F 19 3040 3040 HOH HOH . 
E 3 HOH F 20 3041 3041 HOH HOH . 
E 3 HOH F 21 3043 3043 HOH HOH . 
E 3 HOH F 22 3045 3045 HOH HOH . 
E 3 HOH F 23 3046 3046 HOH HOH . 
E 3 HOH F 24 3050 3050 HOH HOH . 
E 3 HOH F 25 3052 3052 HOH HOH . 
E 3 HOH F 26 3054 3054 HOH HOH . 
E 3 HOH F 27 3055 3055 HOH HOH . 
E 3 HOH F 28 3056 3056 HOH HOH . 
E 3 HOH F 29 3058 3058 HOH HOH . 
E 3 HOH F 30 3059 3059 HOH HOH . 
E 3 HOH F 31 3062 3062 HOH HOH . 
E 3 HOH F 32 3063 3063 HOH HOH . 
E 3 HOH F 33 3070 3070 HOH HOH . 
E 3 HOH F 34 3072 3072 HOH HOH . 
E 3 HOH F 35 3074 3074 HOH HOH . 
E 3 HOH F 36 3075 3075 HOH HOH . 
E 3 HOH F 37 3078 3078 HOH HOH . 
E 3 HOH F 38 3079 3079 HOH HOH . 
E 3 HOH F 39 3081 3081 HOH HOH . 
E 3 HOH F 40 3087 3087 HOH HOH . 
E 3 HOH F 41 3088 3088 HOH HOH . 
E 3 HOH F 42 3090 3090 HOH HOH . 
E 3 HOH F 43 3091 3091 HOH HOH . 
E 3 HOH F 44 3101 3101 HOH HOH . 
E 3 HOH F 45 3102 3102 HOH HOH . 
E 3 HOH F 46 3103 3103 HOH HOH . 
E 3 HOH F 47 3105 3105 HOH HOH . 
E 3 HOH F 48 3110 3110 HOH HOH . 
E 3 HOH F 49 3113 3113 HOH HOH . 
E 3 HOH F 50 3116 3116 HOH HOH . 
E 3 HOH F 51 3118 3118 HOH HOH . 
E 3 HOH F 52 3121 3121 HOH HOH . 
E 3 HOH F 53 3124 3124 HOH HOH . 
E 3 HOH F 54 3125 3125 HOH HOH . 
E 3 HOH F 55 3126 3126 HOH HOH . 
E 3 HOH F 56 3127 3127 HOH HOH . 
E 3 HOH F 57 3129 3129 HOH HOH . 
E 3 HOH F 58 3130 3130 HOH HOH . 
E 3 HOH F 59 3131 3131 HOH HOH . 
E 3 HOH F 60 3133 3133 HOH HOH . 
E 3 HOH F 61 3137 3137 HOH HOH . 
E 3 HOH F 62 3138 3138 HOH HOH . 
E 3 HOH F 63 3142 3142 HOH HOH . 
E 3 HOH F 64 3143 3143 HOH HOH . 
E 3 HOH F 65 3144 3144 HOH HOH . 
E 3 HOH F 66 3145 3145 HOH HOH . 
E 3 HOH F 67 3146 3146 HOH HOH . 
E 3 HOH F 68 3147 3147 HOH HOH . 
E 3 HOH F 69 3151 3151 HOH HOH . 
E 3 HOH F 70 3152 3152 HOH HOH . 
E 3 HOH F 71 3153 3153 HOH HOH . 
E 3 HOH F 72 3159 3159 HOH HOH . 
E 3 HOH F 73 3162 3162 HOH HOH . 
E 3 HOH F 74 3163 3163 HOH HOH . 
E 3 HOH F 75 3164 3164 HOH HOH . 
E 3 HOH F 76 3168 3168 HOH HOH . 
E 3 HOH F 77 3169 3169 HOH HOH . 
E 3 HOH F 78 3173 3173 HOH HOH . 
E 3 HOH F 79 3174 3174 HOH HOH . 
E 3 HOH F 80 3177 3177 HOH HOH . 
E 3 HOH F 81 3179 3179 HOH HOH . 
E 3 HOH F 82 3180 3180 HOH HOH . 
E 3 HOH F 83 3184 3184 HOH HOH . 
E 3 HOH F 84 3185 3185 HOH HOH . 
E 3 HOH F 85 3192 3192 HOH HOH . 
E 3 HOH F 86 3195 3195 HOH HOH . 
E 3 HOH F 87 3199 3199 HOH HOH . 
E 3 HOH F 88 3200 3200 HOH HOH . 
E 3 HOH F 89 3203 3203 HOH HOH . 
E 3 HOH F 90 3206 3206 HOH HOH . 
E 3 HOH F 91 3210 3210 HOH HOH . 
E 3 HOH F 92 3221 3221 HOH HOH . 
E 3 HOH F 93 3223 3223 HOH HOH . 
E 3 HOH F 94 3225 3225 HOH HOH . 
E 3 HOH F 95 3226 3226 HOH HOH . 
E 3 HOH F 96 3228 3228 HOH HOH . 
E 3 HOH F 97 3233 3233 HOH HOH . 
E 3 HOH F 98 3235 3235 HOH HOH . 
E 3 HOH F 99 3239 3239 HOH HOH . 
E 3 HOH F 100 3241 3241 HOH HOH . 
E 3 HOH F 101 3242 3242 HOH HOH . 
E 3 HOH F 102 3243 3243 HOH HOH . 
E 3 HOH F 103 3246 3246 HOH HOH . 
E 3 HOH F 104 3248 3248 HOH HOH . 
E 3 HOH F 105 3254 3254 HOH HOH . 
E 3 HOH F 106 3255 3255 HOH HOH . 
E 3 HOH F 107 3257 3257 HOH HOH . 
E 3 HOH F 108 3259 3259 HOH HOH . 
E 3 HOH F 109 3260 3260 HOH HOH . 
E 3 HOH F 110 3261 3261 HOH HOH . 
E 3 HOH F 111 3264 3264 HOH HOH . 
E 3 HOH F 112 3267 3267 HOH HOH . 
E 3 HOH F 113 3275 3275 HOH HOH . 
E 3 HOH F 114 3277 3277 HOH HOH . 
E 3 HOH F 115 9991 9991 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 56.071 35.841 16.07 1 50.32 ? C1 GOL 5001 F 1 
HETATM 2 O O1 GOL . . . C 2 55.909 35.184 14.832 1 49.06 ? O1 GOL 5001 F 1 
HETATM 3 C C2 GOL . . . C 2 54.801 36.611 16.413 1 52.61 ? C2 GOL 5001 F 1 
HETATM 4 O O2 GOL . . . C 2 54.742 37.772 15.619 1 55.03 ? O2 GOL 5001 F 1 
HETATM 5 C C3 GOL . . . C 2 54.806 36.996 17.888 1 53.35 ? C3 GOL 5001 F 1 
HETATM 6 O O3 GOL . . . C 2 53.628 37.708 18.201 1 54.5 ? O3 GOL 5001 F 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#