data_3DPY # _model_server_result.job_id mIaNZFXuAsdLwcrNG_GWZA _model_server_result.datetime_utc '2024-11-30 08:03:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dpy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 3DPY # _exptl.entry_id 3DPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DPY _cell.length_a 171.491 _cell.length_b 171.491 _cell.length_c 69.529 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 297 B ASP 297 1_555 D ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc2 B OD2 ASP 297 B ASP 297 1_555 D ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc3 B SG CYS 299 B CYS 299 1_555 D ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc4 B NE2 HIS 362 B HIS 362 1_555 D ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DPY _atom_sites.fract_transf_matrix[1][1] 0.005831 _atom_sites.fract_transf_matrix[1][2] 0.003367 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN B 1 1001 1001 ZN ZN . E 5 FPP B 1 1002 1 FPP FPP . F 6 ACY B 1 3002 3002 ACY ACY . G 7 HOH A 1 378 1 HOH HOH . G 7 HOH A 2 379 2 HOH HOH . G 7 HOH A 3 380 15 HOH HOH . G 7 HOH A 4 381 21 HOH HOH . G 7 HOH A 5 382 28 HOH HOH . G 7 HOH A 6 383 37 HOH HOH . G 7 HOH A 7 384 39 HOH HOH . G 7 HOH A 8 385 75 HOH HOH . G 7 HOH A 9 386 77 HOH HOH . G 7 HOH A 10 387 79 HOH HOH . G 7 HOH A 11 388 88 HOH HOH . G 7 HOH A 12 389 196 HOH HOH . G 7 HOH A 13 390 201 HOH HOH . G 7 HOH A 14 391 211 HOH HOH . G 7 HOH A 15 392 223 HOH HOH . G 7 HOH A 16 393 237 HOH HOH . G 7 HOH A 17 394 238 HOH HOH . G 7 HOH A 18 395 246 HOH HOH . G 7 HOH A 19 396 250 HOH HOH . G 7 HOH A 20 397 253 HOH HOH . G 7 HOH A 21 398 257 HOH HOH . G 7 HOH A 22 399 258 HOH HOH . G 7 HOH A 23 400 265 HOH HOH . G 7 HOH A 24 401 269 HOH HOH . G 7 HOH A 25 402 390 HOH HOH . G 7 HOH A 26 403 395 HOH HOH . G 7 HOH A 27 404 400 HOH HOH . G 7 HOH A 28 405 414 HOH HOH . G 7 HOH A 29 406 418 HOH HOH . G 7 HOH A 30 407 422 HOH HOH . G 7 HOH A 31 408 440 HOH HOH . G 7 HOH A 32 409 508 HOH HOH . G 7 HOH A 33 410 509 HOH HOH . G 7 HOH A 34 411 512 HOH HOH . H 7 HOH B 1 3003 5 HOH HOH . H 7 HOH B 2 3004 9 HOH HOH . H 7 HOH B 3 3005 47 HOH HOH . H 7 HOH B 4 3006 48 HOH HOH . H 7 HOH B 5 3007 54 HOH HOH . H 7 HOH B 6 3008 61 HOH HOH . H 7 HOH B 7 3009 80 HOH HOH . H 7 HOH B 8 3010 108 HOH HOH . H 7 HOH B 9 3011 145 HOH HOH . H 7 HOH B 10 3012 222 HOH HOH . H 7 HOH B 11 3013 224 HOH HOH . H 7 HOH B 12 3014 226 HOH HOH . H 7 HOH B 13 3015 239 HOH HOH . H 7 HOH B 14 3016 243 HOH HOH . H 7 HOH B 15 3017 244 HOH HOH . H 7 HOH B 16 3018 247 HOH HOH . H 7 HOH B 17 3019 249 HOH HOH . H 7 HOH B 18 3020 256 HOH HOH . H 7 HOH B 19 3021 260 HOH HOH . H 7 HOH B 20 3022 264 HOH HOH . H 7 HOH B 21 3023 281 HOH HOH . H 7 HOH B 22 3024 402 HOH HOH . H 7 HOH B 23 3025 409 HOH HOH . H 7 HOH B 24 3026 510 HOH HOH . H 7 HOH B 25 3027 511 HOH HOH . I 7 HOH C 1 234 234 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 66.755 _atom_site.Cartn_y 21.883 _atom_site.Cartn_z 5.499 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 120 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #