data_3DQB # _model_server_result.job_id -PdgYYPbk9frKmXtCRc7Nw _model_server_result.datetime_utc '2024-11-16 06:48:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":702}' # _entry.id 3DQB # _exptl.entry_id 3DQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DQB _cell.length_a 238.02 _cell.length_b 238.02 _cell.length_c 109.132 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 401 NAG 3 n C NAG 2 C 2 NAG C 402 NAG 3 n C BMA 3 C 3 BMA C 403 BMA 3 n C MAN 4 C 4 MAN C 404 MAN 4 n D NAG 1 D 1 NAG D 501 NAG 4 n D NAG 2 D 2 NAG D 502 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A ND2 ASN 2 A ASN 2 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A SG CYS 322 A CYS 322 1_555 I C1 PLM . A PLM 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? covale ? covale4 A SG CYS 323 A CYS 323 1_555 H C1 PLM . A PLM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 386 n n C1 O2 PLM doub 387 n n C1 C2 PLM sing 388 n n O1 H PLM sing 389 n n C2 C3 PLM sing 390 n n C2 H21 PLM sing 391 n n C2 H22 PLM sing 392 n n C3 C4 PLM sing 393 n n C3 H31 PLM sing 394 n n C3 H32 PLM sing 395 n n C4 C5 PLM sing 396 n n C4 H41 PLM sing 397 n n C4 H42 PLM sing 398 n n C5 C6 PLM sing 399 n n C5 H51 PLM sing 400 n n C5 H52 PLM sing 401 n n C6 C7 PLM sing 402 n n C6 H61 PLM sing 403 n n C6 H62 PLM sing 404 n n C7 C8 PLM sing 405 n n C7 H71 PLM sing 406 n n C7 H72 PLM sing 407 n n C8 C9 PLM sing 408 n n C8 H81 PLM sing 409 n n C8 H82 PLM sing 410 n n C9 CA PLM sing 411 n n C9 H91 PLM sing 412 n n C9 H92 PLM sing 413 n n CA CB PLM sing 414 n n CA HA1 PLM sing 415 n n CA HA2 PLM sing 416 n n CB CC PLM sing 417 n n CB HB1 PLM sing 418 n n CB HB2 PLM sing 419 n n CC CD PLM sing 420 n n CC HC1 PLM sing 421 n n CC HC2 PLM sing 422 n n CD CE PLM sing 423 n n CD HD1 PLM sing 424 n n CD HD2 PLM sing 425 n n CE CF PLM sing 426 n n CE HE1 PLM sing 427 n n CE HE2 PLM sing 428 n n CF CG PLM sing 429 n n CF HF1 PLM sing 430 n n CF HF2 PLM sing 431 n n CG HG1 PLM sing 432 n n CG HG2 PLM sing 433 n n CG HG3 PLM sing 434 n n # _atom_sites.entry_id 3DQB _atom_sites.fract_transf_matrix[1][1] 0.004201 _atom_sites.fract_transf_matrix[1][2] 0.002426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 BOG A 1 601 601 BOG BOG . F 5 BOG A 1 602 602 BOG BOG . G 5 BOG A 1 603 603 BOG BOG . H 6 PLM A 1 701 701 PLM PLM . I 6 PLM A 1 702 702 PLM PLM . J 7 HOH A 1 703 1 HOH HOH . J 7 HOH A 2 704 2 HOH HOH . J 7 HOH A 3 705 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . I 6 -24.463 9.011 56.059 1 73.76 ? C1 PLM 702 A 1 HETATM 2 O O2 PLM . . . I 6 -24.261 9.781 57.033 1 68.18 ? O2 PLM 702 A 1 HETATM 3 C C2 PLM . . . I 6 -25.352 7.777 56.327 1 68.97 ? C2 PLM 702 A 1 HETATM 4 C C3 PLM . . . I 6 -26.848 8.084 56.212 1 70.26 ? C3 PLM 702 A 1 HETATM 5 C C4 PLM . . . I 6 -27.534 7.05 55.307 1 77.65 ? C4 PLM 702 A 1 HETATM 6 C C5 PLM . . . I 6 -29.008 6.836 55.692 1 85.11 ? C5 PLM 702 A 1 HETATM 7 C C6 PLM . . . I 6 -29.567 5.55 55.059 1 92.76 ? C6 PLM 702 A 1 HETATM 8 C C7 PLM . . . I 6 -30.332 4.696 56.082 1 104.32 ? C7 PLM 702 A 1 HETATM 9 C C8 PLM . . . I 6 -31.733 4.254 55.552 1 114.22 ? C8 PLM 702 A 1 HETATM 10 C C9 PLM . . . I 6 -32.585 3.607 56.68 1 118.02 ? C9 PLM 702 A 1 HETATM 11 C CA PLM . . . I 6 -33.139 2.205 56.285 1 119.34 ? CA PLM 702 A 1 HETATM 12 C CB PLM . . . I 6 -32.841 1.171 57.426 1 121.23 ? CB PLM 702 A 1 HETATM 13 C CC PLM . . . I 6 -31.989 -0.039 56.87 1 123.36 ? CC PLM 702 A 1 HETATM 14 C CD PLM . . . I 6 -32.669 -1.399 57.443 1 124.43 ? CD PLM 702 A 1 HETATM 15 C CE PLM . . . I 6 -31.644 -2.566 57.176 1 122.75 ? CE PLM 702 A 1 HETATM 16 C CF PLM . . . I 6 -32.178 -3.932 57.654 1 117.58 ? CF PLM 702 A 1 HETATM 17 C CG PLM . . . I 6 -31.054 -4.793 58.273 1 107.49 ? CG PLM 702 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #