data_3DQT # _model_server_result.job_id sLxacQLRuoRglbY1Jw3Gpg _model_server_result.datetime_utc '2024-11-09 01:58:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":760}' # _entry.id 3DQT # _exptl.entry_id 3DQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DQT _cell.length_a 58.25 _cell.length_b 106.49 _cell.length_c 156.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 96 1_555 K ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A SG CYS 35 A CYS 101 1_555 K ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 A SG CYS 120 A CYS 186 1_555 E FE HEM . A HEM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 B SG CYS 30 B CYS 96 1_555 K ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc5 B SG CYS 35 B CYS 101 1_555 K ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 B SG CYS 120 B CYS 186 1_555 L FE HEM . B HEM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 158 n y N1 C8A H4B sing 159 n y C2 N2 H4B sing 160 n n C2 N3 H4B sing 161 n y N2 HN21 H4B sing 162 n n N2 HN22 H4B sing 163 n n N3 C4 H4B sing 164 n y N3 HN3 H4B sing 165 n n C4 O4 H4B doub 166 n n C4 C4A H4B sing 167 n y C4A C8A H4B doub 168 n y C4A N5 H4B sing 169 n n C8A N8 H4B sing 170 n n N5 C6 H4B sing 171 n n N5 HN5 H4B sing 172 n n N8 C7 H4B sing 173 n n N8 HN8 H4B sing 174 n n C6 C7 H4B sing 175 n n C6 C9 H4B sing 176 n n C6 H6 H4B sing 177 n n C7 H71 H4B sing 178 n n C7 H72 H4B sing 179 n n C9 O9 H4B sing 180 n n C9 C10 H4B sing 181 n n C9 H9 H4B sing 182 n n O9 HO9 H4B sing 183 n n C10 C11 H4B sing 184 n n C10 O10 H4B sing 185 n n C10 H10 H4B sing 186 n n C11 H111 H4B sing 187 n n C11 H112 H4B sing 188 n n C11 H113 H4B sing 189 n n O10 HO0 H4B sing 190 n n # _atom_sites.entry_id 3DQT _atom_sites.fract_transf_matrix[1][1] 0.017167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CAC A 1 850 850 CAC CAC . D 3 ACT A 1 860 860 ACT ACT . E 4 HEM A 1 700 700 HEM HEM . F 5 H4B A 1 760 760 H4B H4B . G 6 JI7 A 1 800 800 JI7 JI7 . H 7 GOL A 1 880 880 GOL GOL . I 2 CAC B 1 850 850 CAC CAC . J 3 ACT B 1 860 860 ACT ACT . K 8 ZN B 1 900 900 ZN ZN . L 4 HEM B 1 700 700 HEM HEM . M 5 H4B B 1 760 760 H4B H4B . N 6 JI7 B 1 800 800 JI7 JI7 . O 7 GOL B 1 880 880 GOL GOL . P 9 HOH A 1 881 2 HOH HOH . P 9 HOH A 2 882 4 HOH HOH . P 9 HOH A 3 883 5 HOH HOH . P 9 HOH A 4 884 6 HOH HOH . P 9 HOH A 5 885 7 HOH HOH . P 9 HOH A 6 886 8 HOH HOH . P 9 HOH A 7 887 10 HOH HOH . P 9 HOH A 8 888 11 HOH HOH . P 9 HOH A 9 889 12 HOH HOH . P 9 HOH A 10 890 13 HOH HOH . P 9 HOH A 11 891 14 HOH HOH . P 9 HOH A 12 892 15 HOH HOH . P 9 HOH A 13 893 16 HOH HOH . P 9 HOH A 14 894 18 HOH HOH . P 9 HOH A 15 895 19 HOH HOH . P 9 HOH A 16 896 23 HOH HOH . P 9 HOH A 17 897 25 HOH HOH . P 9 HOH A 18 898 26 HOH HOH . P 9 HOH A 19 899 30 HOH HOH . P 9 HOH A 20 900 31 HOH HOH . P 9 HOH A 21 901 32 HOH HOH . P 9 HOH A 22 902 33 HOH HOH . P 9 HOH A 23 903 34 HOH HOH . P 9 HOH A 24 904 36 HOH HOH . P 9 HOH A 25 905 37 HOH HOH . P 9 HOH A 26 906 38 HOH HOH . P 9 HOH A 27 907 39 HOH HOH . P 9 HOH A 28 908 40 HOH HOH . P 9 HOH A 29 909 42 HOH HOH . P 9 HOH A 30 910 45 HOH HOH . P 9 HOH A 31 911 46 HOH HOH . P 9 HOH A 32 912 50 HOH HOH . P 9 HOH A 33 913 51 HOH HOH . P 9 HOH A 34 914 52 HOH HOH . P 9 HOH A 35 915 54 HOH HOH . P 9 HOH A 36 916 55 HOH HOH . P 9 HOH A 37 917 58 HOH HOH . P 9 HOH A 38 918 59 HOH HOH . P 9 HOH A 39 919 63 HOH HOH . P 9 HOH A 40 920 66 HOH HOH . P 9 HOH A 41 921 68 HOH HOH . P 9 HOH A 42 922 69 HOH HOH . P 9 HOH A 43 923 72 HOH HOH . P 9 HOH A 44 924 73 HOH HOH . P 9 HOH A 45 925 74 HOH HOH . P 9 HOH A 46 926 76 HOH HOH . P 9 HOH A 47 927 78 HOH HOH . P 9 HOH A 48 928 79 HOH HOH . P 9 HOH A 49 929 82 HOH HOH . P 9 HOH A 50 930 83 HOH HOH . P 9 HOH A 51 931 85 HOH HOH . P 9 HOH A 52 932 86 HOH HOH . P 9 HOH A 53 933 87 HOH HOH . P 9 HOH A 54 934 88 HOH HOH . P 9 HOH A 55 935 89 HOH HOH . P 9 HOH A 56 936 94 HOH HOH . P 9 HOH A 57 937 95 HOH HOH . P 9 HOH A 58 938 96 HOH HOH . P 9 HOH A 59 939 99 HOH HOH . P 9 HOH A 60 940 101 HOH HOH . P 9 HOH A 61 941 103 HOH HOH . P 9 HOH A 62 942 105 HOH HOH . P 9 HOH A 63 943 106 HOH HOH . P 9 HOH A 64 944 107 HOH HOH . P 9 HOH A 65 945 111 HOH HOH . P 9 HOH A 66 946 113 HOH HOH . P 9 HOH A 67 947 115 HOH HOH . P 9 HOH A 68 948 118 HOH HOH . P 9 HOH A 69 949 120 HOH HOH . P 9 HOH A 70 950 122 HOH HOH . P 9 HOH A 71 951 123 HOH HOH . P 9 HOH A 72 952 125 HOH HOH . P 9 HOH A 73 953 128 HOH HOH . P 9 HOH A 74 954 129 HOH HOH . P 9 HOH A 75 955 130 HOH HOH . P 9 HOH A 76 956 131 HOH HOH . P 9 HOH A 77 957 132 HOH HOH . P 9 HOH A 78 958 134 HOH HOH . P 9 HOH A 79 959 137 HOH HOH . P 9 HOH A 80 960 138 HOH HOH . P 9 HOH A 81 961 140 HOH HOH . P 9 HOH A 82 962 141 HOH HOH . P 9 HOH A 83 963 143 HOH HOH . P 9 HOH A 84 964 145 HOH HOH . P 9 HOH A 85 965 150 HOH HOH . P 9 HOH A 86 966 151 HOH HOH . P 9 HOH A 87 967 154 HOH HOH . P 9 HOH A 88 968 156 HOH HOH . P 9 HOH A 89 969 161 HOH HOH . P 9 HOH A 90 970 162 HOH HOH . P 9 HOH A 91 971 163 HOH HOH . P 9 HOH A 92 972 165 HOH HOH . P 9 HOH A 93 973 167 HOH HOH . P 9 HOH A 94 974 168 HOH HOH . P 9 HOH A 95 975 170 HOH HOH . P 9 HOH A 96 976 171 HOH HOH . P 9 HOH A 97 977 173 HOH HOH . P 9 HOH A 98 978 174 HOH HOH . P 9 HOH A 99 979 175 HOH HOH . P 9 HOH A 100 980 179 HOH HOH . P 9 HOH A 101 981 181 HOH HOH . P 9 HOH A 102 982 184 HOH HOH . Q 9 HOH B 1 901 1 HOH HOH . Q 9 HOH B 2 902 3 HOH HOH . Q 9 HOH B 3 903 9 HOH HOH . Q 9 HOH B 4 904 17 HOH HOH . Q 9 HOH B 5 905 20 HOH HOH . Q 9 HOH B 6 906 21 HOH HOH . Q 9 HOH B 7 907 22 HOH HOH . Q 9 HOH B 8 908 24 HOH HOH . Q 9 HOH B 9 909 27 HOH HOH . Q 9 HOH B 10 910 28 HOH HOH . Q 9 HOH B 11 911 29 HOH HOH . Q 9 HOH B 12 912 35 HOH HOH . Q 9 HOH B 13 913 41 HOH HOH . Q 9 HOH B 14 914 43 HOH HOH . Q 9 HOH B 15 915 44 HOH HOH . Q 9 HOH B 16 916 47 HOH HOH . Q 9 HOH B 17 917 48 HOH HOH . Q 9 HOH B 18 918 49 HOH HOH . Q 9 HOH B 19 919 53 HOH HOH . Q 9 HOH B 20 920 56 HOH HOH . Q 9 HOH B 21 921 57 HOH HOH . Q 9 HOH B 22 922 60 HOH HOH . Q 9 HOH B 23 923 61 HOH HOH . Q 9 HOH B 24 924 62 HOH HOH . Q 9 HOH B 25 925 64 HOH HOH . Q 9 HOH B 26 926 65 HOH HOH . Q 9 HOH B 27 927 67 HOH HOH . Q 9 HOH B 28 928 70 HOH HOH . Q 9 HOH B 29 929 71 HOH HOH . Q 9 HOH B 30 930 75 HOH HOH . Q 9 HOH B 31 931 77 HOH HOH . Q 9 HOH B 32 932 80 HOH HOH . Q 9 HOH B 33 933 81 HOH HOH . Q 9 HOH B 34 934 84 HOH HOH . Q 9 HOH B 35 935 90 HOH HOH . Q 9 HOH B 36 936 91 HOH HOH . Q 9 HOH B 37 937 92 HOH HOH . Q 9 HOH B 38 938 93 HOH HOH . Q 9 HOH B 39 939 97 HOH HOH . Q 9 HOH B 40 940 98 HOH HOH . Q 9 HOH B 41 941 100 HOH HOH . Q 9 HOH B 42 942 102 HOH HOH . Q 9 HOH B 43 943 104 HOH HOH . Q 9 HOH B 44 944 108 HOH HOH . Q 9 HOH B 45 945 109 HOH HOH . Q 9 HOH B 46 946 110 HOH HOH . Q 9 HOH B 47 947 112 HOH HOH . Q 9 HOH B 48 948 114 HOH HOH . Q 9 HOH B 49 949 116 HOH HOH . Q 9 HOH B 50 950 117 HOH HOH . Q 9 HOH B 51 951 119 HOH HOH . Q 9 HOH B 52 952 121 HOH HOH . Q 9 HOH B 53 953 124 HOH HOH . Q 9 HOH B 54 954 126 HOH HOH . Q 9 HOH B 55 955 127 HOH HOH . Q 9 HOH B 56 956 133 HOH HOH . Q 9 HOH B 57 957 135 HOH HOH . Q 9 HOH B 58 958 136 HOH HOH . Q 9 HOH B 59 959 139 HOH HOH . Q 9 HOH B 60 960 142 HOH HOH . Q 9 HOH B 61 961 144 HOH HOH . Q 9 HOH B 62 962 146 HOH HOH . Q 9 HOH B 63 963 147 HOH HOH . Q 9 HOH B 64 964 148 HOH HOH . Q 9 HOH B 65 965 149 HOH HOH . Q 9 HOH B 66 966 152 HOH HOH . Q 9 HOH B 67 967 153 HOH HOH . Q 9 HOH B 68 968 155 HOH HOH . Q 9 HOH B 69 969 157 HOH HOH . Q 9 HOH B 70 970 158 HOH HOH . Q 9 HOH B 71 971 159 HOH HOH . Q 9 HOH B 72 972 160 HOH HOH . Q 9 HOH B 73 973 164 HOH HOH . Q 9 HOH B 74 974 166 HOH HOH . Q 9 HOH B 75 975 169 HOH HOH . Q 9 HOH B 76 976 172 HOH HOH . Q 9 HOH B 77 977 176 HOH HOH . Q 9 HOH B 78 978 177 HOH HOH . Q 9 HOH B 79 979 178 HOH HOH . Q 9 HOH B 80 980 180 HOH HOH . Q 9 HOH B 81 981 182 HOH HOH . Q 9 HOH B 82 982 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . M 5 2.694 7.017 56.228 1 68.12 ? N1 H4B 760 B 1 HETATM 2 C C2 H4B . . . M 5 2.125 7.163 57.462 1 69.79 ? C2 H4B 760 B 1 HETATM 3 N N2 H4B . . . M 5 2.182 8.29 58.157 1 71.23 ? N2 H4B 760 B 1 HETATM 4 N N3 H4B . . . M 5 1.473 6.094 57.991 1 69.88 ? N3 H4B 760 B 1 HETATM 5 C C4 H4B . . . M 5 1.332 4.833 57.359 1 68.86 ? C4 H4B 760 B 1 HETATM 6 O O4 H4B . . . M 5 0.715 3.927 57.939 1 72.88 ? O4 H4B 760 B 1 HETATM 7 C C4A H4B . . . M 5 1.944 4.757 56.092 1 67.79 ? C4A H4B 760 B 1 HETATM 8 C C8A H4B . . . M 5 2.621 5.828 55.513 1 65.4 ? C8A H4B 760 B 1 HETATM 9 N N5 H4B . . . M 5 1.832 3.482 55.392 1 65.21 ? N5 H4B 760 B 1 HETATM 10 N N8 H4B . . . M 5 3.202 5.743 54.301 1 60.48 ? N8 H4B 760 B 1 HETATM 11 C C6 H4B . . . M 5 2.941 3.24 54.382 1 61.76 ? C6 H4B 760 B 1 HETATM 12 C C7 H4B . . . M 5 3.146 4.5 53.522 1 61.73 ? C7 H4B 760 B 1 HETATM 13 C C9 H4B . . . M 5 2.501 1.962 53.646 1 60.57 ? C9 H4B 760 B 1 HETATM 14 O O9 H4B . . . M 5 1.163 2.044 53.156 1 60.91 ? O9 H4B 760 B 1 HETATM 15 C C10 H4B . . . M 5 3.396 1.617 52.455 1 57.97 ? C10 H4B 760 B 1 HETATM 16 C C11 H4B . . . M 5 3.287 0.184 52.139 1 58 ? C11 H4B 760 B 1 HETATM 17 O O10 H4B . . . M 5 4.73 1.972 52.832 1 54.34 ? O10 H4B 760 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #