data_3DQX # _model_server_result.job_id FRrsU30XwVhvUqRj54LaAA _model_server_result.datetime_utc '2024-11-09 02:11:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3DQX # _exptl.entry_id 3DQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.36 _cell.angle_gamma 90 _cell.entry_id 3DQX _cell.length_a 42.507 _cell.length_b 119.15 _cell.length_c 63.676 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3DQX _atom_sites.fract_transf_matrix[1][1] 0.023526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000148 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 1 1 AMP AMP . D 2 AMP B 1 2 2 AMP AMP . E 3 HOH A 1 3 3 HOH HOH . E 3 HOH A 2 5 5 HOH HOH . E 3 HOH A 3 6 6 HOH HOH . E 3 HOH A 4 8 8 HOH HOH . E 3 HOH A 5 9 9 HOH HOH . E 3 HOH A 6 12 12 HOH HOH . E 3 HOH A 7 14 14 HOH HOH . E 3 HOH A 8 15 15 HOH HOH . E 3 HOH A 9 18 18 HOH HOH . E 3 HOH A 10 19 19 HOH HOH . E 3 HOH A 11 23 23 HOH HOH . E 3 HOH A 12 26 26 HOH HOH . E 3 HOH A 13 28 28 HOH HOH . E 3 HOH A 14 31 31 HOH HOH . E 3 HOH A 15 32 32 HOH HOH . E 3 HOH A 16 33 33 HOH HOH . E 3 HOH A 17 35 35 HOH HOH . E 3 HOH A 18 36 36 HOH HOH . E 3 HOH A 19 37 37 HOH HOH . E 3 HOH A 20 43 43 HOH HOH . E 3 HOH A 21 46 46 HOH HOH . E 3 HOH A 22 48 48 HOH HOH . E 3 HOH A 23 49 49 HOH HOH . E 3 HOH A 24 51 51 HOH HOH . E 3 HOH A 25 52 52 HOH HOH . E 3 HOH A 26 54 54 HOH HOH . E 3 HOH A 27 58 58 HOH HOH . E 3 HOH A 28 61 61 HOH HOH . E 3 HOH A 29 63 63 HOH HOH . E 3 HOH A 30 64 64 HOH HOH . E 3 HOH A 31 65 65 HOH HOH . E 3 HOH A 32 66 66 HOH HOH . E 3 HOH A 33 67 67 HOH HOH . E 3 HOH A 34 70 70 HOH HOH . E 3 HOH A 35 73 73 HOH HOH . E 3 HOH A 36 79 79 HOH HOH . E 3 HOH A 37 82 82 HOH HOH . E 3 HOH A 38 85 85 HOH HOH . E 3 HOH A 39 87 87 HOH HOH . E 3 HOH A 40 88 88 HOH HOH . E 3 HOH A 41 92 92 HOH HOH . E 3 HOH A 42 94 94 HOH HOH . E 3 HOH A 43 95 95 HOH HOH . E 3 HOH A 44 96 96 HOH HOH . E 3 HOH A 45 97 97 HOH HOH . E 3 HOH A 46 99 99 HOH HOH . E 3 HOH A 47 101 101 HOH HOH . E 3 HOH A 48 104 104 HOH HOH . E 3 HOH A 49 105 105 HOH HOH . E 3 HOH A 50 109 109 HOH HOH . E 3 HOH A 51 115 115 HOH HOH . E 3 HOH A 52 116 116 HOH HOH . E 3 HOH A 53 117 117 HOH HOH . E 3 HOH A 54 118 118 HOH HOH . E 3 HOH A 55 120 120 HOH HOH . E 3 HOH A 56 124 124 HOH HOH . E 3 HOH A 57 125 125 HOH HOH . E 3 HOH A 58 126 126 HOH HOH . E 3 HOH A 59 127 127 HOH HOH . E 3 HOH A 60 128 128 HOH HOH . E 3 HOH A 61 129 129 HOH HOH . E 3 HOH A 62 132 132 HOH HOH . E 3 HOH A 63 135 135 HOH HOH . E 3 HOH A 64 139 139 HOH HOH . E 3 HOH A 65 140 140 HOH HOH . E 3 HOH A 66 143 143 HOH HOH . E 3 HOH A 67 152 152 HOH HOH . E 3 HOH A 68 156 156 HOH HOH . E 3 HOH A 69 157 157 HOH HOH . E 3 HOH A 70 158 158 HOH HOH . E 3 HOH A 71 159 159 HOH HOH . E 3 HOH A 72 160 160 HOH HOH . E 3 HOH A 73 161 161 HOH HOH . E 3 HOH A 74 162 162 HOH HOH . E 3 HOH A 75 163 163 HOH HOH . E 3 HOH A 76 164 164 HOH HOH . E 3 HOH A 77 166 166 HOH HOH . E 3 HOH A 78 167 167 HOH HOH . E 3 HOH A 79 169 169 HOH HOH . E 3 HOH A 80 170 170 HOH HOH . E 3 HOH A 81 171 171 HOH HOH . E 3 HOH A 82 172 172 HOH HOH . E 3 HOH A 83 174 174 HOH HOH . E 3 HOH A 84 177 177 HOH HOH . E 3 HOH A 85 178 178 HOH HOH . E 3 HOH A 86 182 182 HOH HOH . E 3 HOH A 87 184 184 HOH HOH . E 3 HOH A 88 185 185 HOH HOH . E 3 HOH A 89 187 187 HOH HOH . E 3 HOH A 90 188 188 HOH HOH . E 3 HOH A 91 189 189 HOH HOH . E 3 HOH A 92 190 190 HOH HOH . E 3 HOH A 93 191 191 HOH HOH . E 3 HOH A 94 192 192 HOH HOH . F 3 HOH B 1 534 534 HOH HOH . F 3 HOH B 2 535 535 HOH HOH . F 3 HOH B 3 536 536 HOH HOH . F 3 HOH B 4 537 537 HOH HOH . F 3 HOH B 5 538 538 HOH HOH . F 3 HOH B 6 539 539 HOH HOH . F 3 HOH B 7 540 540 HOH HOH . F 3 HOH B 8 541 541 HOH HOH . F 3 HOH B 9 542 542 HOH HOH . F 3 HOH B 10 543 543 HOH HOH . F 3 HOH B 11 544 544 HOH HOH . F 3 HOH B 12 545 545 HOH HOH . F 3 HOH B 13 546 546 HOH HOH . F 3 HOH B 14 547 547 HOH HOH . F 3 HOH B 15 548 548 HOH HOH . F 3 HOH B 16 549 549 HOH HOH . F 3 HOH B 17 550 550 HOH HOH . F 3 HOH B 18 551 551 HOH HOH . F 3 HOH B 19 552 552 HOH HOH . F 3 HOH B 20 553 553 HOH HOH . F 3 HOH B 21 554 554 HOH HOH . F 3 HOH B 22 555 555 HOH HOH . F 3 HOH B 23 556 556 HOH HOH . F 3 HOH B 24 557 557 HOH HOH . F 3 HOH B 25 558 558 HOH HOH . F 3 HOH B 26 559 559 HOH HOH . F 3 HOH B 27 560 560 HOH HOH . F 3 HOH B 28 561 561 HOH HOH . F 3 HOH B 29 562 562 HOH HOH . F 3 HOH B 30 563 563 HOH HOH . F 3 HOH B 31 564 564 HOH HOH . F 3 HOH B 32 565 565 HOH HOH . F 3 HOH B 33 566 566 HOH HOH . F 3 HOH B 34 567 567 HOH HOH . F 3 HOH B 35 568 568 HOH HOH . F 3 HOH B 36 569 569 HOH HOH . F 3 HOH B 37 570 570 HOH HOH . F 3 HOH B 38 571 571 HOH HOH . F 3 HOH B 39 572 572 HOH HOH . F 3 HOH B 40 573 573 HOH HOH . F 3 HOH B 41 574 574 HOH HOH . F 3 HOH B 42 575 575 HOH HOH . F 3 HOH B 43 576 576 HOH HOH . F 3 HOH B 44 577 577 HOH HOH . F 3 HOH B 45 578 578 HOH HOH . F 3 HOH B 46 579 579 HOH HOH . F 3 HOH B 47 580 580 HOH HOH . F 3 HOH B 48 581 581 HOH HOH . F 3 HOH B 49 582 582 HOH HOH . F 3 HOH B 50 583 583 HOH HOH . F 3 HOH B 51 584 584 HOH HOH . F 3 HOH B 52 585 585 HOH HOH . F 3 HOH B 53 586 586 HOH HOH . F 3 HOH B 54 587 587 HOH HOH . F 3 HOH B 55 588 588 HOH HOH . F 3 HOH B 56 589 589 HOH HOH . F 3 HOH B 57 590 590 HOH HOH . F 3 HOH B 58 591 591 HOH HOH . F 3 HOH B 59 592 592 HOH HOH . F 3 HOH B 60 593 593 HOH HOH . F 3 HOH B 61 594 594 HOH HOH . F 3 HOH B 62 595 595 HOH HOH . F 3 HOH B 63 596 596 HOH HOH . F 3 HOH B 64 597 597 HOH HOH . F 3 HOH B 65 598 598 HOH HOH . F 3 HOH B 66 599 599 HOH HOH . F 3 HOH B 67 600 600 HOH HOH . F 3 HOH B 68 601 601 HOH HOH . F 3 HOH B 69 602 602 HOH HOH . F 3 HOH B 70 603 603 HOH HOH . F 3 HOH B 71 604 604 HOH HOH . F 3 HOH B 72 605 605 HOH HOH . F 3 HOH B 73 606 606 HOH HOH . F 3 HOH B 74 607 607 HOH HOH . F 3 HOH B 75 608 608 HOH HOH . F 3 HOH B 76 609 609 HOH HOH . F 3 HOH B 77 610 610 HOH HOH . F 3 HOH B 78 611 611 HOH HOH . F 3 HOH B 79 612 612 HOH HOH . F 3 HOH B 80 613 613 HOH HOH . F 3 HOH B 81 614 614 HOH HOH . F 3 HOH B 82 615 615 HOH HOH . F 3 HOH B 83 616 616 HOH HOH . F 3 HOH B 84 617 617 HOH HOH . F 3 HOH B 85 618 618 HOH HOH . F 3 HOH B 86 619 619 HOH HOH . F 3 HOH B 87 620 620 HOH HOH . F 3 HOH B 88 621 621 HOH HOH . F 3 HOH B 89 622 622 HOH HOH . F 3 HOH B 90 623 623 HOH HOH . F 3 HOH B 91 624 624 HOH HOH . F 3 HOH B 92 625 625 HOH HOH . F 3 HOH B 93 626 626 HOH HOH . F 3 HOH B 94 627 627 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . D 2 -3.71 -41.403 -70.698 1 88.68 ? P AMP 2 B 1 HETATM 2 O O1P AMP . . . D 2 -3.007 -40.275 -69.772 1 89.28 ? O1P AMP 2 B 1 HETATM 3 O O2P AMP . . . D 2 -2.722 -42.148 -71.536 1 89.34 ? O2P AMP 2 B 1 HETATM 4 O O3P AMP . . . D 2 -4.475 -42.372 -69.641 1 88.72 ? O3P AMP 2 B 1 HETATM 5 O O5' AMP . . . D 2 -4.83 -40.602 -71.574 1 86.54 ? O5' AMP 2 B 1 HETATM 6 C C5' AMP . . . D 2 -5.944 -41.282 -72.176 1 82.48 ? C5' AMP 2 B 1 HETATM 7 C C4' AMP . . . D 2 -7.269 -40.481 -72.076 1 79.58 ? C4' AMP 2 B 1 HETATM 8 O O4' AMP . . . D 2 -8.344 -41.456 -71.855 1 77.2 ? O4' AMP 2 B 1 HETATM 9 C C3' AMP . . . D 2 -7.34 -39.485 -70.9 1 77.93 ? C3' AMP 2 B 1 HETATM 10 O O3' AMP . . . D 2 -6.985 -38.162 -71.342 1 78.25 ? O3' AMP 2 B 1 HETATM 11 C C2' AMP . . . D 2 -8.813 -39.556 -70.482 1 76.48 ? C2' AMP 2 B 1 HETATM 12 O O2' AMP . . . D 2 -9.645 -38.734 -71.327 1 75.39 ? O2' AMP 2 B 1 HETATM 13 C C1' AMP . . . D 2 -9.146 -41.039 -70.712 1 74.98 ? C1' AMP 2 B 1 HETATM 14 N N9 AMP . . . D 2 -8.859 -41.951 -69.54 1 71.53 ? N9 AMP 2 B 1 HETATM 15 C C8 AMP . . . D 2 -7.666 -42.449 -69.195 1 70.91 ? C8 AMP 2 B 1 HETATM 16 N N7 AMP . . . D 2 -7.787 -43.228 -68.121 1 69.72 ? N7 AMP 2 B 1 HETATM 17 C C5 AMP . . . D 2 -9.073 -43.228 -67.772 1 69.3 ? C5 AMP 2 B 1 HETATM 18 C C6 AMP . . . D 2 -9.781 -43.841 -66.738 1 68.76 ? C6 AMP 2 B 1 HETATM 19 N N6 AMP . . . D 2 -9.139 -44.619 -65.85 1 67.85 ? N6 AMP 2 B 1 HETATM 20 N N1 AMP . . . D 2 -11.109 -43.626 -66.651 1 67.45 ? N1 AMP 2 B 1 HETATM 21 C C2 AMP . . . D 2 -11.725 -42.854 -67.538 1 67.8 ? C2 AMP 2 B 1 HETATM 22 N N3 AMP . . . D 2 -11.081 -42.251 -68.531 1 68.29 ? N3 AMP 2 B 1 HETATM 23 C C4 AMP . . . D 2 -9.755 -42.417 -68.671 1 69.66 ? C4 AMP 2 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #