data_3DR1 # _model_server_result.job_id Gbn-cV3eI5QNV6wdaiyocg _model_server_result.datetime_utc '2025-07-01 20:54:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 3DR1 # _exptl.entry_id 3DR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.499 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3R)-5-[(2E)-3-{(1S,3R)-2,2,3-trimethyl-3-[6,6,6-trifluoro-5-hydroxy-5-(trifluoromethyl)hex-3-yn-1-yl]cyclopentyl}prop-2-en-1-ylidene]cyclohexane-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DR1 _cell.length_a 66.1 _cell.length_b 66.1 _cell.length_c 265.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 33.05 57.244279 44.266667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H32 F6 O3' _chem_comp.formula_weight 482.499 _chem_comp.id C5D _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3R)-5-[(2E)-3-{(1S,3R)-2,2,3-trimethyl-3-[6,6,6-trifluoro-5-hydroxy-5-(trifluoromethyl)hex-3-yn-1-yl]cyclopentyl}prop-2-en-1-ylidene]cyclohexane-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C22 C5D sing 70 n n C20 C17 C5D sing 71 n n C22 C23 C5D sing 72 n n C23 C24 C5D trip 73 n n C24 C25 C5D sing 74 n n C25 C27 C5D sing 75 n n C25 C26 C5D sing 76 n n C25 O3 C5D sing 77 n n C27 F11 C5D sing 78 n n C27 F19 C5D sing 79 n n C27 F21 C5D sing 80 n n C26 F28 C5D sing 81 n n C26 F29 C5D sing 82 n n C26 F30 C5D sing 83 n n O2 C3 C5D sing 84 n n C1 C2 C5D sing 85 n n C1 C10 C5D sing 86 n n C1 O1 C5D sing 87 n n C2 C3 C5D sing 88 n n C3 C4 C5D sing 89 n n C4 C5 C5D sing 90 n n C5 C6 C5D doub 91 n n C5 C10 C5D sing 92 n n C6 C7 C5D sing 93 n n C7 C8 C5D doub 94 n n C8 C14 C5D sing 95 n n C12 C13 C5D sing 96 n n C13 C14 C5D sing 97 n n C13 C17 C5D sing 98 n n C13 C18 C5D sing 99 n n C14 C15 C5D sing 100 n n C15 C16 C5D sing 101 n n C16 C17 C5D sing 102 n n C17 C9 C5D sing 103 n n C20 H20 C5D sing 104 n n C20 H20A C5D sing 105 n n C22 H22 C5D sing 106 n n C22 H22A C5D sing 107 e n O3 HO3 C5D sing 108 n n O2 HO2 C5D sing 109 n n C1 H1 C5D sing 110 n n C2 H2 C5D sing 111 n n C2 H2A C5D sing 112 n n C3 H3 C5D sing 113 n n C4 H4 C5D sing 114 n n C4 H4A C5D sing 115 n n C6 H6 C5D sing 116 n n C7 H7 C5D sing 117 n n C8 H8 C5D sing 118 n n C10 H10 C5D sing 119 n n C10 H10A C5D sing 120 n n C12 H12 C5D sing 121 n n C12 H12A C5D sing 122 n n C12 H12B C5D sing 123 n n C14 H14 C5D sing 124 n n C15 H15 C5D sing 125 n n C15 H15A C5D sing 126 n n C16 H16 C5D sing 127 n n C16 H16A C5D sing 128 n n C18 H18 C5D sing 129 n n C18 H18A C5D sing 130 n n C18 H18B C5D sing 131 n n O1 HO1 C5D sing 132 n n C9 H9 C5D sing 133 n n C9 H9A C5D sing 134 n n C9 H9B C5D sing 135 n n # _atom_sites.entry_id 3DR1 _atom_sites.fract_transf_matrix[1][1] 0.015129 _atom_sites.fract_transf_matrix[1][2] 0.008734 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1 1 MG MG2 . D 4 C5D A 1 500 500 C5D CD5 . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 4 HOH HOH . E 5 HOH A 4 504 5 HOH HOH . E 5 HOH A 5 505 6 HOH HOH . E 5 HOH A 6 506 7 HOH HOH . E 5 HOH A 7 507 11 HOH HOH . E 5 HOH A 8 508 15 HOH HOH . E 5 HOH A 9 509 16 HOH HOH . E 5 HOH A 10 510 17 HOH HOH . E 5 HOH A 11 511 19 HOH HOH . E 5 HOH A 12 512 22 HOH HOH . E 5 HOH A 13 513 25 HOH HOH . E 5 HOH A 14 514 32 HOH HOH . E 5 HOH A 15 515 40 HOH HOH . E 5 HOH A 16 516 41 HOH HOH . E 5 HOH A 17 517 42 HOH HOH . E 5 HOH A 18 518 45 HOH HOH . E 5 HOH A 19 519 47 HOH HOH . E 5 HOH A 20 520 48 HOH HOH . E 5 HOH A 21 521 49 HOH HOH . E 5 HOH A 22 522 51 HOH HOH . E 5 HOH A 23 523 55 HOH HOH . E 5 HOH A 24 524 65 HOH HOH . E 5 HOH A 25 525 70 HOH HOH . E 5 HOH A 26 526 71 HOH HOH . E 5 HOH A 27 527 73 HOH HOH . E 5 HOH A 28 528 10 HOH HOH . E 5 HOH A 29 529 13 HOH HOH . E 5 HOH A 30 530 18 HOH HOH . E 5 HOH A 31 531 19 HOH HOH . E 5 HOH A 32 532 78 HOH HOH . E 5 HOH A 33 533 92 HOH HOH . E 5 HOH A 34 534 94 HOH HOH . E 5 HOH A 35 535 96 HOH HOH . E 5 HOH A 36 536 132 HOH HOH . E 5 HOH A 37 537 134 HOH HOH . E 5 HOH A 38 538 144 HOH HOH . E 5 HOH A 39 539 149 HOH HOH . E 5 HOH A 40 540 151 HOH HOH . E 5 HOH A 41 541 161 HOH HOH . E 5 HOH A 42 542 162 HOH HOH . E 5 HOH A 43 543 163 HOH HOH . E 5 HOH A 44 544 164 HOH HOH . E 5 HOH A 45 545 165 HOH HOH . E 5 HOH A 46 546 166 HOH HOH . E 5 HOH A 47 547 167 HOH HOH . E 5 HOH A 48 548 168 HOH HOH . E 5 HOH A 49 549 169 HOH HOH . E 5 HOH A 50 550 170 HOH HOH . E 5 HOH A 51 551 171 HOH HOH . E 5 HOH A 52 552 172 HOH HOH . E 5 HOH A 53 553 173 HOH HOH . F 5 HOH B 1 1 1 HOH HOH . F 5 HOH B 2 8 8 HOH HOH . F 5 HOH B 3 13 13 HOH HOH . F 5 HOH B 4 14 14 HOH HOH . F 5 HOH B 5 20 20 HOH HOH . F 5 HOH B 6 58 58 HOH HOH . F 5 HOH B 7 66 66 HOH HOH . F 5 HOH B 8 69 69 HOH HOH . F 5 HOH B 9 72 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 C5D . . . D 4 3.17 30.313 37.315 1 39.94 ? C20 C5D 500 A 1 HETATM 2 C C22 C5D . . . D 4 2.604 29.66 36.046 1 39.68 ? C22 C5D 500 A 1 HETATM 3 C C23 C5D . . . D 4 3.535 29.146 35.083 1 40.93 ? C23 C5D 500 A 1 HETATM 4 C C24 C5D . . . D 4 4.296 28.721 34.289 1 43.03 ? C24 C5D 500 A 1 HETATM 5 C C25 C5D . . . D 4 5.235 28.196 33.309 1 44.06 ? C25 C5D 500 A 1 HETATM 6 C C27 C5D . . . D 4 6.462 29.131 33.131 1 44.47 ? C27 C5D 500 A 1 HETATM 7 C C26 C5D . . . D 4 4.453 27.943 31.97 1 43.53 ? C26 C5D 500 A 1 HETATM 8 O O3 C5D . . . D 4 5.671 26.96 33.881 1 45.75 ? O3 C5D 500 A 1 HETATM 9 F F11 C5D . . . D 4 7.339 28.58 32.282 1 45.71 ? F11 C5D 500 A 1 HETATM 10 F F19 C5D . . . D 4 7.057 29.303 34.314 1 44.84 ? F19 C5D 500 A 1 HETATM 11 F F21 C5D . . . D 4 6.079 30.322 32.656 1 44.74 ? F21 C5D 500 A 1 HETATM 12 F F28 C5D . . . D 4 5.251 27.397 31.058 1 41.29 ? F28 C5D 500 A 1 HETATM 13 F F29 C5D . . . D 4 3.973 29.094 31.488 1 46.74 ? F29 C5D 500 A 1 HETATM 14 F F30 C5D . . . D 4 3.432 27.116 32.189 1 40.8 ? F30 C5D 500 A 1 HETATM 15 O O2 C5D . . . D 4 0.946 40.305 40.531 1 27.35 ? O2 C5D 500 A 1 HETATM 16 C C1 C5D . . . D 4 3.278 39.332 38.887 1 33.46 ? C1 C5D 500 A 1 HETATM 17 C C2 C5D . . . D 4 2.449 40.63 38.645 1 29.02 ? C2 C5D 500 A 1 HETATM 18 C C3 C5D . . . D 4 0.968 40.471 39.11 1 30.72 ? C3 C5D 500 A 1 HETATM 19 C C4 C5D . . . D 4 0.293 39.253 38.416 1 31.33 ? C4 C5D 500 A 1 HETATM 20 C C5 C5D . . . D 4 1.056 37.947 38.61 1 32.65 ? C5 C5D 500 A 1 HETATM 21 C C6 C5D . . . D 4 0.53 36.822 39.072 1 32.32 ? C6 C5D 500 A 1 HETATM 22 C C7 C5D . . . D 4 1.084 35.46 39.363 1 32.68 ? C7 C5D 500 A 1 HETATM 23 C C8 C5D . . . D 4 0.535 34.299 39.068 1 32.49 ? C8 C5D 500 A 1 HETATM 24 C C10 C5D . . . D 4 2.544 38.106 38.259 1 31.43 ? C10 C5D 500 A 1 HETATM 25 C C12 C5D . . . D 4 0.079 32.038 37.18 1 39.69 ? C12 C5D 500 A 1 HETATM 26 C C13 C5D . . . D 4 1.491 32.257 37.807 1 37.6 ? C13 C5D 500 A 1 HETATM 27 C C14 C5D . . . D 4 1.262 32.963 39.197 1 37.4 ? C14 C5D 500 A 1 HETATM 28 C C15 C5D . . . D 4 2.699 32.902 39.841 1 37.15 ? C15 C5D 500 A 1 HETATM 29 C C16 C5D . . . D 4 3.314 31.585 39.296 1 38.21 ? C16 C5D 500 A 1 HETATM 30 C C17 C5D . . . D 4 2.258 31.009 38.336 1 38.98 ? C17 C5D 500 A 1 HETATM 31 C C18 C5D . . . D 4 2.203 33.182 36.767 1 37.89 ? C18 C5D 500 A 1 HETATM 32 O O1 C5D . . . D 4 4.634 39.472 38.424 1 34.81 ? O1 C5D 500 A 1 HETATM 33 C C9 C5D . . . D 4 1.314 30.076 39.163 1 39.68 ? C9 C5D 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 33 #