data_3DRS # _model_server_result.job_id iXVTgoj-OGgEFtEtZGkC7g _model_server_result.datetime_utc '2025-04-12 00:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3drs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 3DRS # _exptl.entry_id 3DRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.241 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-chloro-5-[2-chloro-5-(1H-pyrazolo[3,4-b]pyridin-3-ylmethoxy)phenoxy]benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DRS _cell.length_a 118.55 _cell.length_b 154.63 _cell.length_c 154.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H12 Cl2 N4 O2' _chem_comp.formula_weight 411.241 _chem_comp.id R8D _chem_comp.mon_nstd_flag . _chem_comp.name 3-chloro-5-[2-chloro-5-(1H-pyrazolo[3,4-b]pyridin-3-ylmethoxy)phenoxy]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL28 C13 R8D sing 275 n n C13 C8 R8D doub 276 n y C13 C12 R8D sing 277 n y C8 O7 R8D sing 278 n n C8 C9 R8D sing 279 n y O7 C4 R8D sing 280 n n C4 C3 R8D doub 281 n y C4 C5 R8D sing 282 n y C3 C2 R8D sing 283 n y C2 C25 R8D sing 284 n n C2 C1 R8D doub 285 n y C25 N26 R8D trip 286 n n C5 C6 R8D doub 287 n y C6 CL27 R8D sing 288 n n C6 C1 R8D sing 289 n y C12 C11 R8D doub 290 n y C11 C10 R8D sing 291 n y C10 C9 R8D doub 292 n y C10 O14 R8D sing 293 n n O14 C15 R8D sing 294 n n C15 C16 R8D sing 295 n n C16 N20 R8D doub 296 n y C16 C17 R8D sing 297 n y N20 N19 R8D sing 298 n y N19 C18 R8D sing 299 n y C18 N24 R8D doub 300 n y C18 C17 R8D sing 301 n y N24 C23 R8D sing 302 n y C23 C22 R8D doub 303 n y C22 C21 R8D sing 304 n y C21 C17 R8D doub 305 n y C3 H3 R8D sing 306 n n C5 H5 R8D sing 307 n n C1 H1 R8D sing 308 n n C12 H12 R8D sing 309 n n C11 H11 R8D sing 310 n n C9 H9 R8D sing 311 n n C15 H15 R8D sing 312 n n C15 H15A R8D sing 313 n n N19 HN19 R8D sing 314 n n C23 H23 R8D sing 315 n n C22 H22 R8D sing 316 n n C21 H21 R8D sing 317 n n # _atom_sites.entry_id 3DRS _atom_sites.fract_transf_matrix[1][1] 0.008435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id R8D _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id R8D _pdbx_nonpoly_scheme.auth_mon_id R8D _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL28 R8D . . . C 3 12.395 12.1 15.407 1 70.79 ? CL28 R8D 601 A 1 HETATM 2 C C13 R8D . . . C 3 10.695 12.536 14.957 1 69.34 ? C13 R8D 601 A 1 HETATM 3 C C8 R8D . . . C 3 9.805 12.37 15.95 1 68.45 ? C8 R8D 601 A 1 HETATM 4 O O7 R8D . . . C 3 10.503 11.953 17.004 1 67.83 ? O7 R8D 601 A 1 HETATM 5 C C4 R8D . . . C 3 10.459 12.419 18.226 1 66.18 ? C4 R8D 601 A 1 HETATM 6 C C3 R8D . . . C 3 10.189 11.512 19.232 1 66.26 ? C3 R8D 601 A 1 HETATM 7 C C2 R8D . . . C 3 10.092 11.846 20.563 1 65.78 ? C2 R8D 601 A 1 HETATM 8 C C25 R8D . . . C 3 9.884 10.953 21.491 1 65.78 ? C25 R8D 601 A 1 HETATM 9 N N26 R8D . . . C 3 9.693 10.11 22.369 1 64.97 ? N26 R8D 601 A 1 HETATM 10 C C5 R8D . . . C 3 10.669 13.69 18.469 1 65.09 ? C5 R8D 601 A 1 HETATM 11 C C6 R8D . . . C 3 10.561 13.971 19.772 1 64.8 ? C6 R8D 601 A 1 HETATM 12 CL CL27 R8D . . . C 3 10.785 15.582 20.041 1 64.92 ? CL27 R8D 601 A 1 HETATM 13 C C1 R8D . . . C 3 10.286 13.181 20.855 1 65.69 ? C1 R8D 601 A 1 HETATM 14 C C12 R8D . . . C 3 10.294 12.993 13.719 1 69.69 ? C12 R8D 601 A 1 HETATM 15 C C11 R8D . . . C 3 8.941 13.247 13.532 1 70.03 ? C11 R8D 601 A 1 HETATM 16 C C10 R8D . . . C 3 8.03 13.015 14.545 1 70.42 ? C10 R8D 601 A 1 HETATM 17 C C9 R8D . . . C 3 8.434 12.572 15.838 1 69.09 ? C9 R8D 601 A 1 HETATM 18 O O14 R8D . . . C 3 6.728 13.233 14.165 1 71.27 ? O14 R8D 601 A 1 HETATM 19 C C15 R8D . . . C 3 5.759 12.208 14.453 1 77.14 ? C15 R8D 601 A 1 HETATM 20 C C16 R8D . . . C 3 6.024 10.844 13.921 1 78.15 ? C16 R8D 601 A 1 HETATM 21 N N20 R8D . . . C 3 6.571 10.563 12.71 1 78.89 ? N20 R8D 601 A 1 HETATM 22 N N19 R8D . . . C 3 6.702 9.142 12.573 1 79.44 ? N19 R8D 601 A 1 HETATM 23 C C18 R8D . . . C 3 6.237 8.483 13.703 1 79.77 ? C18 R8D 601 A 1 HETATM 24 N N24 R8D . . . C 3 6.128 7.122 14.106 1 79.56 ? N24 R8D 601 A 1 HETATM 25 C C23 R8D . . . C 3 5.608 6.715 15.317 1 78.56 ? C23 R8D 601 A 1 HETATM 26 C C22 R8D . . . C 3 5.151 7.686 16.198 1 78.91 ? C22 R8D 601 A 1 HETATM 27 C C21 R8D . . . C 3 5.27 9.072 15.842 1 79.45 ? C21 R8D 601 A 1 HETATM 28 C C17 R8D . . . C 3 5.794 9.489 14.589 1 79.18 ? C17 R8D 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #