data_3DSW # _model_server_result.job_id PSkO-9RNjXX1RA4bvZu8Hg _model_server_result.datetime_utc '2024-11-16 23:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dsw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":333}' # _entry.id 3DSW # _exptl.entry_id 3DSW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DSW _cell.length_a 67.051 _cell.length_b 90.908 _cell.length_c 114.343 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DSW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 3 A HIS 2 1_555 C ZN ZN . B ZN 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc2 B O HIS 64 B HIS 64 1_555 D CA CA . B CA 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc3 B O MET 66 B MET 66 1_555 D CA CA . B CA 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 B OD2 ASP 238 B ASP 238 1_555 C ZN ZN . B ZN 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 B SG CYS 240 B CYS 240 1_555 C ZN ZN . B ZN 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc6 B NE2 HIS 290 B HIS 290 1_555 C ZN ZN . B ZN 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 D CA CA . B CA 333 1_555 G O HOH . B HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc8 D CA CA . B CA 333 1_555 G O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc9 D CA CA . B CA 333 1_555 G O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DSW _atom_sites.fract_transf_matrix[1][1] 0.014914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 332 1 ZN ZN . D 4 CA B 1 333 1 CA CA . E 5 GER B 1 334 1 GER C2 . F 6 HOH A 1 331 3 HOH HOH . F 6 HOH A 2 332 4 HOH HOH . F 6 HOH A 3 333 6 HOH HOH . F 6 HOH A 4 334 9 HOH HOH . F 6 HOH A 5 335 10 HOH HOH . F 6 HOH A 6 336 12 HOH HOH . F 6 HOH A 7 337 15 HOH HOH . F 6 HOH A 8 338 18 HOH HOH . F 6 HOH A 9 339 20 HOH HOH . F 6 HOH A 10 340 22 HOH HOH . F 6 HOH A 11 341 23 HOH HOH . F 6 HOH A 12 342 24 HOH HOH . F 6 HOH A 13 343 27 HOH HOH . F 6 HOH A 14 344 32 HOH HOH . F 6 HOH A 15 345 40 HOH HOH . F 6 HOH A 16 346 41 HOH HOH . F 6 HOH A 17 347 43 HOH HOH . F 6 HOH A 18 348 47 HOH HOH . F 6 HOH A 19 349 48 HOH HOH . F 6 HOH A 20 350 52 HOH HOH . F 6 HOH A 21 351 53 HOH HOH . F 6 HOH A 22 352 56 HOH HOH . F 6 HOH A 23 353 57 HOH HOH . F 6 HOH A 24 354 58 HOH HOH . F 6 HOH A 25 355 63 HOH HOH . F 6 HOH A 26 356 65 HOH HOH . F 6 HOH A 27 357 71 HOH HOH . F 6 HOH A 28 358 78 HOH HOH . F 6 HOH A 29 359 82 HOH HOH . F 6 HOH A 30 360 86 HOH HOH . F 6 HOH A 31 361 88 HOH HOH . F 6 HOH A 32 362 90 HOH HOH . F 6 HOH A 33 363 92 HOH HOH . F 6 HOH A 34 364 93 HOH HOH . F 6 HOH A 35 365 94 HOH HOH . F 6 HOH A 36 366 95 HOH HOH . F 6 HOH A 37 367 99 HOH HOH . F 6 HOH A 38 368 105 HOH HOH . F 6 HOH A 39 369 110 HOH HOH . F 6 HOH A 40 370 117 HOH HOH . F 6 HOH A 41 371 118 HOH HOH . F 6 HOH A 42 372 120 HOH HOH . F 6 HOH A 43 373 121 HOH HOH . F 6 HOH A 44 374 124 HOH HOH . F 6 HOH A 45 375 127 HOH HOH . F 6 HOH A 46 376 133 HOH HOH . F 6 HOH A 47 377 135 HOH HOH . F 6 HOH A 48 378 140 HOH HOH . F 6 HOH A 49 379 166 HOH HOH . F 6 HOH A 50 380 174 HOH HOH . F 6 HOH A 51 381 177 HOH HOH . F 6 HOH A 52 382 181 HOH HOH . F 6 HOH A 53 383 183 HOH HOH . F 6 HOH A 54 384 184 HOH HOH . F 6 HOH A 55 385 188 HOH HOH . F 6 HOH A 56 386 192 HOH HOH . F 6 HOH A 57 387 199 HOH HOH . F 6 HOH A 58 388 202 HOH HOH . F 6 HOH A 59 389 204 HOH HOH . F 6 HOH A 60 390 205 HOH HOH . F 6 HOH A 61 391 206 HOH HOH . F 6 HOH A 62 392 207 HOH HOH . F 6 HOH A 63 393 209 HOH HOH . F 6 HOH A 64 394 210 HOH HOH . F 6 HOH A 65 395 215 HOH HOH . F 6 HOH A 66 396 218 HOH HOH . F 6 HOH A 67 397 221 HOH HOH . F 6 HOH A 68 398 224 HOH HOH . F 6 HOH A 69 399 225 HOH HOH . F 6 HOH A 70 400 226 HOH HOH . F 6 HOH A 71 401 228 HOH HOH . F 6 HOH A 72 402 229 HOH HOH . F 6 HOH A 73 403 234 HOH HOH . F 6 HOH A 74 404 237 HOH HOH . F 6 HOH A 75 405 241 HOH HOH . F 6 HOH A 76 406 242 HOH HOH . F 6 HOH A 77 407 244 HOH HOH . F 6 HOH A 78 408 248 HOH HOH . F 6 HOH A 79 409 249 HOH HOH . F 6 HOH A 80 410 252 HOH HOH . F 6 HOH A 81 411 253 HOH HOH . F 6 HOH A 82 412 254 HOH HOH . F 6 HOH A 83 413 257 HOH HOH . F 6 HOH A 84 414 260 HOH HOH . F 6 HOH A 85 415 262 HOH HOH . F 6 HOH A 86 416 265 HOH HOH . F 6 HOH A 87 417 266 HOH HOH . F 6 HOH A 88 418 267 HOH HOH . F 6 HOH A 89 419 270 HOH HOH . F 6 HOH A 90 420 271 HOH HOH . F 6 HOH A 91 421 274 HOH HOH . F 6 HOH A 92 422 275 HOH HOH . F 6 HOH A 93 423 279 HOH HOH . F 6 HOH A 94 424 284 HOH HOH . F 6 HOH A 95 425 285 HOH HOH . F 6 HOH A 96 426 290 HOH HOH . F 6 HOH A 97 427 295 HOH HOH . F 6 HOH A 98 428 297 HOH HOH . F 6 HOH A 99 429 298 HOH HOH . F 6 HOH A 100 430 300 HOH HOH . F 6 HOH A 101 431 301 HOH HOH . F 6 HOH A 102 432 302 HOH HOH . F 6 HOH A 103 433 303 HOH HOH . F 6 HOH A 104 434 305 HOH HOH . F 6 HOH A 105 435 308 HOH HOH . F 6 HOH A 106 436 309 HOH HOH . F 6 HOH A 107 437 311 HOH HOH . F 6 HOH A 108 438 312 HOH HOH . F 6 HOH A 109 439 313 HOH HOH . F 6 HOH A 110 440 314 HOH HOH . F 6 HOH A 111 441 320 HOH HOH . F 6 HOH A 112 442 322 HOH HOH . F 6 HOH A 113 443 325 HOH HOH . F 6 HOH A 114 444 326 HOH HOH . F 6 HOH A 115 445 329 HOH HOH . F 6 HOH A 116 446 330 HOH HOH . F 6 HOH A 117 447 332 HOH HOH . F 6 HOH A 118 448 334 HOH HOH . F 6 HOH A 119 449 336 HOH HOH . F 6 HOH A 120 450 338 HOH HOH . F 6 HOH A 121 451 339 HOH HOH . F 6 HOH A 122 452 340 HOH HOH . F 6 HOH A 123 453 343 HOH HOH . F 6 HOH A 124 454 345 HOH HOH . F 6 HOH A 125 455 346 HOH HOH . F 6 HOH A 126 456 348 HOH HOH . F 6 HOH A 127 457 350 HOH HOH . F 6 HOH A 128 458 351 HOH HOH . F 6 HOH A 129 459 353 HOH HOH . F 6 HOH A 130 460 354 HOH HOH . F 6 HOH A 131 461 355 HOH HOH . F 6 HOH A 132 462 358 HOH HOH . F 6 HOH A 133 463 360 HOH HOH . F 6 HOH A 134 464 361 HOH HOH . F 6 HOH A 135 465 363 HOH HOH . F 6 HOH A 136 466 364 HOH HOH . F 6 HOH A 137 467 366 HOH HOH . F 6 HOH A 138 468 367 HOH HOH . G 6 HOH B 1 335 2 HOH HOH . G 6 HOH B 2 336 5 HOH HOH . G 6 HOH B 3 337 7 HOH HOH . G 6 HOH B 4 338 8 HOH HOH . G 6 HOH B 5 339 11 HOH HOH . G 6 HOH B 6 340 13 HOH HOH . G 6 HOH B 7 341 14 HOH HOH . G 6 HOH B 8 342 16 HOH HOH . G 6 HOH B 9 343 17 HOH HOH . G 6 HOH B 10 344 19 HOH HOH . G 6 HOH B 11 345 25 HOH HOH . G 6 HOH B 12 346 26 HOH HOH . G 6 HOH B 13 347 29 HOH HOH . G 6 HOH B 14 348 30 HOH HOH . G 6 HOH B 15 349 31 HOH HOH . G 6 HOH B 16 350 35 HOH HOH . G 6 HOH B 17 351 37 HOH HOH . G 6 HOH B 18 352 38 HOH HOH . G 6 HOH B 19 353 39 HOH HOH . G 6 HOH B 20 354 42 HOH HOH . G 6 HOH B 21 355 44 HOH HOH . G 6 HOH B 22 356 45 HOH HOH . G 6 HOH B 23 357 50 HOH HOH . G 6 HOH B 24 358 51 HOH HOH . G 6 HOH B 25 359 55 HOH HOH . G 6 HOH B 26 360 59 HOH HOH . G 6 HOH B 27 361 60 HOH HOH . G 6 HOH B 28 362 61 HOH HOH . G 6 HOH B 29 363 66 HOH HOH . G 6 HOH B 30 364 68 HOH HOH . G 6 HOH B 31 365 69 HOH HOH . G 6 HOH B 32 366 74 HOH HOH . G 6 HOH B 33 367 75 HOH HOH . G 6 HOH B 34 368 76 HOH HOH . G 6 HOH B 35 369 77 HOH HOH . G 6 HOH B 36 370 80 HOH HOH . G 6 HOH B 37 371 81 HOH HOH . G 6 HOH B 38 372 83 HOH HOH . G 6 HOH B 39 373 84 HOH HOH . G 6 HOH B 40 374 85 HOH HOH . G 6 HOH B 41 375 87 HOH HOH . G 6 HOH B 42 376 96 HOH HOH . G 6 HOH B 43 377 98 HOH HOH . G 6 HOH B 44 378 100 HOH HOH . G 6 HOH B 45 379 101 HOH HOH . G 6 HOH B 46 380 103 HOH HOH . G 6 HOH B 47 381 104 HOH HOH . G 6 HOH B 48 382 107 HOH HOH . G 6 HOH B 49 383 112 HOH HOH . G 6 HOH B 50 384 114 HOH HOH . G 6 HOH B 51 385 122 HOH HOH . G 6 HOH B 52 386 125 HOH HOH . G 6 HOH B 53 387 129 HOH HOH . G 6 HOH B 54 388 130 HOH HOH . G 6 HOH B 55 389 134 HOH HOH . G 6 HOH B 56 390 136 HOH HOH . G 6 HOH B 57 391 137 HOH HOH . G 6 HOH B 58 392 138 HOH HOH . G 6 HOH B 59 393 139 HOH HOH . G 6 HOH B 60 394 142 HOH HOH . G 6 HOH B 61 395 144 HOH HOH . G 6 HOH B 62 396 145 HOH HOH . G 6 HOH B 63 397 153 HOH HOH . G 6 HOH B 64 398 159 HOH HOH . G 6 HOH B 65 399 161 HOH HOH . G 6 HOH B 66 400 162 HOH HOH . G 6 HOH B 67 401 167 HOH HOH . G 6 HOH B 68 402 173 HOH HOH . G 6 HOH B 69 403 178 HOH HOH . G 6 HOH B 70 404 198 HOH HOH . G 6 HOH B 71 405 200 HOH HOH . G 6 HOH B 72 406 201 HOH HOH . G 6 HOH B 73 407 203 HOH HOH . G 6 HOH B 74 408 208 HOH HOH . G 6 HOH B 75 409 211 HOH HOH . G 6 HOH B 76 410 212 HOH HOH . G 6 HOH B 77 411 213 HOH HOH . G 6 HOH B 78 412 214 HOH HOH . G 6 HOH B 79 413 217 HOH HOH . G 6 HOH B 80 414 219 HOH HOH . G 6 HOH B 81 415 220 HOH HOH . G 6 HOH B 82 416 222 HOH HOH . G 6 HOH B 83 417 223 HOH HOH . G 6 HOH B 84 418 227 HOH HOH . G 6 HOH B 85 419 230 HOH HOH . G 6 HOH B 86 420 231 HOH HOH . G 6 HOH B 87 421 232 HOH HOH . G 6 HOH B 88 422 233 HOH HOH . G 6 HOH B 89 423 235 HOH HOH . G 6 HOH B 90 424 239 HOH HOH . G 6 HOH B 91 425 240 HOH HOH . G 6 HOH B 92 426 243 HOH HOH . G 6 HOH B 93 427 245 HOH HOH . G 6 HOH B 94 428 247 HOH HOH . G 6 HOH B 95 429 256 HOH HOH . G 6 HOH B 96 430 258 HOH HOH . G 6 HOH B 97 431 259 HOH HOH . G 6 HOH B 98 432 261 HOH HOH . G 6 HOH B 99 433 264 HOH HOH . G 6 HOH B 100 434 269 HOH HOH . G 6 HOH B 101 435 272 HOH HOH . G 6 HOH B 102 436 273 HOH HOH . G 6 HOH B 103 437 277 HOH HOH . G 6 HOH B 104 438 278 HOH HOH . G 6 HOH B 105 439 280 HOH HOH . G 6 HOH B 106 440 281 HOH HOH . G 6 HOH B 107 441 282 HOH HOH . G 6 HOH B 108 442 283 HOH HOH . G 6 HOH B 109 443 287 HOH HOH . G 6 HOH B 110 444 288 HOH HOH . G 6 HOH B 111 445 289 HOH HOH . G 6 HOH B 112 446 291 HOH HOH . G 6 HOH B 113 447 292 HOH HOH . G 6 HOH B 114 448 296 HOH HOH . G 6 HOH B 115 449 315 HOH HOH . G 6 HOH B 116 450 316 HOH HOH . G 6 HOH B 117 451 317 HOH HOH . G 6 HOH B 118 452 318 HOH HOH . G 6 HOH B 119 453 319 HOH HOH . G 6 HOH B 120 454 327 HOH HOH . G 6 HOH B 121 455 328 HOH HOH . G 6 HOH B 122 456 333 HOH HOH . G 6 HOH B 123 457 337 HOH HOH . G 6 HOH B 124 458 347 HOH HOH . G 6 HOH B 125 459 369 HOH HOH . G 6 HOH B 126 460 370 HOH HOH . G 6 HOH B 127 461 371 HOH HOH . G 6 HOH B 128 462 373 HOH HOH . G 6 HOH B 129 463 374 HOH HOH . G 6 HOH B 130 464 375 HOH HOH . G 6 HOH B 131 465 376 HOH HOH . G 6 HOH B 132 466 377 HOH HOH . G 6 HOH B 133 467 378 HOH HOH . G 6 HOH B 134 468 379 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -8.356 _atom_site.Cartn_y 43.848 _atom_site.Cartn_z 29.077 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 333 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 128 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #