data_3DSX # _model_server_result.job_id 2A_P-I7UWAbhCLDohaW4wA _model_server_result.datetime_utc '2024-11-27 09:03:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dsx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":333}' # _entry.id 3DSX # _exptl.entry_id 3DSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DSX _cell.length_a 67.354 _cell.length_b 91.153 _cell.length_c 114.591 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 3 A HIS 2 1_555 C ZN ZN . B ZN 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc2 B O HIS 64 B HIS 64 1_555 D CA CA . B CA 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc3 B O MET 66 B MET 66 1_555 D CA CA . B CA 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc4 B OD2 ASP 238 B ASP 238 1_555 C ZN ZN . B ZN 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 B SG CYS 240 B CYS 240 1_555 C ZN ZN . B ZN 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc6 B NE2 HIS 290 B HIS 290 1_555 C ZN ZN . B ZN 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc7 D CA CA . B CA 333 1_555 G O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc8 D CA CA . B CA 333 1_555 G O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DSX _atom_sites.fract_transf_matrix[1][1] 0.014847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 332 1 ZN ZN . D 4 CA B 1 333 1 CA CA . E 5 GER B 1 334 1 GER C2 . F 6 HOH A 1 331 2 HOH HOH . F 6 HOH A 2 332 5 HOH HOH . F 6 HOH A 3 333 9 HOH HOH . F 6 HOH A 4 334 10 HOH HOH . F 6 HOH A 5 335 14 HOH HOH . F 6 HOH A 6 336 16 HOH HOH . F 6 HOH A 7 337 21 HOH HOH . F 6 HOH A 8 338 23 HOH HOH . F 6 HOH A 9 339 24 HOH HOH . F 6 HOH A 10 340 27 HOH HOH . F 6 HOH A 11 341 31 HOH HOH . F 6 HOH A 12 342 32 HOH HOH . F 6 HOH A 13 343 33 HOH HOH . F 6 HOH A 14 344 34 HOH HOH . F 6 HOH A 15 345 36 HOH HOH . F 6 HOH A 16 346 37 HOH HOH . F 6 HOH A 17 347 41 HOH HOH . F 6 HOH A 18 348 42 HOH HOH . F 6 HOH A 19 349 44 HOH HOH . F 6 HOH A 20 350 46 HOH HOH . F 6 HOH A 21 351 53 HOH HOH . F 6 HOH A 22 352 57 HOH HOH . F 6 HOH A 23 353 58 HOH HOH . F 6 HOH A 24 354 59 HOH HOH . F 6 HOH A 25 355 61 HOH HOH . F 6 HOH A 26 356 64 HOH HOH . F 6 HOH A 27 357 68 HOH HOH . F 6 HOH A 28 358 72 HOH HOH . F 6 HOH A 29 359 73 HOH HOH . F 6 HOH A 30 360 77 HOH HOH . F 6 HOH A 31 361 79 HOH HOH . F 6 HOH A 32 362 80 HOH HOH . F 6 HOH A 33 363 82 HOH HOH . F 6 HOH A 34 364 85 HOH HOH . F 6 HOH A 35 365 91 HOH HOH . F 6 HOH A 36 366 93 HOH HOH . F 6 HOH A 37 367 96 HOH HOH . F 6 HOH A 38 368 99 HOH HOH . F 6 HOH A 39 369 100 HOH HOH . F 6 HOH A 40 370 101 HOH HOH . F 6 HOH A 41 371 102 HOH HOH . F 6 HOH A 42 372 103 HOH HOH . F 6 HOH A 43 373 109 HOH HOH . F 6 HOH A 44 374 112 HOH HOH . F 6 HOH A 45 375 113 HOH HOH . F 6 HOH A 46 376 115 HOH HOH . F 6 HOH A 47 377 116 HOH HOH . F 6 HOH A 48 378 118 HOH HOH . F 6 HOH A 49 379 119 HOH HOH . F 6 HOH A 50 380 127 HOH HOH . F 6 HOH A 51 381 130 HOH HOH . F 6 HOH A 52 382 132 HOH HOH . F 6 HOH A 53 383 138 HOH HOH . F 6 HOH A 54 384 142 HOH HOH . F 6 HOH A 55 385 145 HOH HOH . F 6 HOH A 56 386 148 HOH HOH . F 6 HOH A 57 387 149 HOH HOH . F 6 HOH A 58 388 153 HOH HOH . F 6 HOH A 59 389 157 HOH HOH . F 6 HOH A 60 390 164 HOH HOH . F 6 HOH A 61 391 165 HOH HOH . F 6 HOH A 62 392 167 HOH HOH . F 6 HOH A 63 393 169 HOH HOH . F 6 HOH A 64 394 172 HOH HOH . F 6 HOH A 65 395 176 HOH HOH . F 6 HOH A 66 396 177 HOH HOH . F 6 HOH A 67 397 179 HOH HOH . F 6 HOH A 68 398 181 HOH HOH . F 6 HOH A 69 399 184 HOH HOH . F 6 HOH A 70 400 187 HOH HOH . F 6 HOH A 71 401 195 HOH HOH . F 6 HOH A 72 402 204 HOH HOH . F 6 HOH A 73 403 205 HOH HOH . F 6 HOH A 74 404 210 HOH HOH . F 6 HOH A 75 405 211 HOH HOH . F 6 HOH A 76 406 215 HOH HOH . F 6 HOH A 77 407 221 HOH HOH . F 6 HOH A 78 408 223 HOH HOH . F 6 HOH A 79 409 230 HOH HOH . F 6 HOH A 80 410 237 HOH HOH . F 6 HOH A 81 411 238 HOH HOH . F 6 HOH A 82 412 243 HOH HOH . F 6 HOH A 83 413 246 HOH HOH . F 6 HOH A 84 414 247 HOH HOH . F 6 HOH A 85 415 248 HOH HOH . F 6 HOH A 86 416 253 HOH HOH . F 6 HOH A 87 417 254 HOH HOH . F 6 HOH A 88 418 267 HOH HOH . F 6 HOH A 89 419 271 HOH HOH . F 6 HOH A 90 420 272 HOH HOH . F 6 HOH A 91 421 274 HOH HOH . F 6 HOH A 92 422 275 HOH HOH . F 6 HOH A 93 423 276 HOH HOH . F 6 HOH A 94 424 277 HOH HOH . F 6 HOH A 95 425 278 HOH HOH . F 6 HOH A 96 426 279 HOH HOH . F 6 HOH A 97 427 280 HOH HOH . F 6 HOH A 98 428 283 HOH HOH . F 6 HOH A 99 429 285 HOH HOH . F 6 HOH A 100 430 286 HOH HOH . F 6 HOH A 101 431 287 HOH HOH . F 6 HOH A 102 432 288 HOH HOH . F 6 HOH A 103 433 289 HOH HOH . F 6 HOH A 104 434 291 HOH HOH . F 6 HOH A 105 435 294 HOH HOH . F 6 HOH A 106 436 299 HOH HOH . F 6 HOH A 107 437 301 HOH HOH . F 6 HOH A 108 438 303 HOH HOH . F 6 HOH A 109 439 305 HOH HOH . F 6 HOH A 110 440 306 HOH HOH . F 6 HOH A 111 441 309 HOH HOH . F 6 HOH A 112 442 315 HOH HOH . F 6 HOH A 113 443 321 HOH HOH . F 6 HOH A 114 444 327 HOH HOH . F 6 HOH A 115 445 330 HOH HOH . F 6 HOH A 116 446 338 HOH HOH . F 6 HOH A 117 447 339 HOH HOH . F 6 HOH A 118 448 340 HOH HOH . F 6 HOH A 119 449 342 HOH HOH . F 6 HOH A 120 450 344 HOH HOH . F 6 HOH A 121 451 345 HOH HOH . F 6 HOH A 122 452 346 HOH HOH . F 6 HOH A 123 453 352 HOH HOH . F 6 HOH A 124 454 353 HOH HOH . F 6 HOH A 125 455 355 HOH HOH . F 6 HOH A 126 456 356 HOH HOH . F 6 HOH A 127 457 357 HOH HOH . F 6 HOH A 128 458 358 HOH HOH . F 6 HOH A 129 459 359 HOH HOH . F 6 HOH A 130 460 360 HOH HOH . F 6 HOH A 131 461 361 HOH HOH . F 6 HOH A 132 462 362 HOH HOH . F 6 HOH A 133 463 367 HOH HOH . F 6 HOH A 134 464 368 HOH HOH . F 6 HOH A 135 465 369 HOH HOH . F 6 HOH A 136 466 371 HOH HOH . F 6 HOH A 137 467 372 HOH HOH . F 6 HOH A 138 468 373 HOH HOH . F 6 HOH A 139 469 375 HOH HOH . F 6 HOH A 140 470 377 HOH HOH . F 6 HOH A 141 471 378 HOH HOH . F 6 HOH A 142 472 379 HOH HOH . F 6 HOH A 143 473 381 HOH HOH . F 6 HOH A 144 474 382 HOH HOH . F 6 HOH A 145 475 384 HOH HOH . F 6 HOH A 146 476 385 HOH HOH . F 6 HOH A 147 477 386 HOH HOH . G 6 HOH B 1 335 6 HOH HOH . G 6 HOH B 2 336 11 HOH HOH . G 6 HOH B 3 337 12 HOH HOH . G 6 HOH B 4 338 13 HOH HOH . G 6 HOH B 5 339 17 HOH HOH . G 6 HOH B 6 340 19 HOH HOH . G 6 HOH B 7 341 25 HOH HOH . G 6 HOH B 8 342 26 HOH HOH . G 6 HOH B 9 343 28 HOH HOH . G 6 HOH B 10 344 29 HOH HOH . G 6 HOH B 11 345 30 HOH HOH . G 6 HOH B 12 346 35 HOH HOH . G 6 HOH B 13 347 38 HOH HOH . G 6 HOH B 14 348 39 HOH HOH . G 6 HOH B 15 349 40 HOH HOH . G 6 HOH B 16 350 43 HOH HOH . G 6 HOH B 17 351 47 HOH HOH . G 6 HOH B 18 352 48 HOH HOH . G 6 HOH B 19 353 49 HOH HOH . G 6 HOH B 20 354 51 HOH HOH . G 6 HOH B 21 355 52 HOH HOH . G 6 HOH B 22 356 54 HOH HOH . G 6 HOH B 23 357 55 HOH HOH . G 6 HOH B 24 358 56 HOH HOH . G 6 HOH B 25 359 60 HOH HOH . G 6 HOH B 26 360 62 HOH HOH . G 6 HOH B 27 361 63 HOH HOH . G 6 HOH B 28 362 65 HOH HOH . G 6 HOH B 29 363 66 HOH HOH . G 6 HOH B 30 364 67 HOH HOH . G 6 HOH B 31 365 69 HOH HOH . G 6 HOH B 32 366 70 HOH HOH . G 6 HOH B 33 367 71 HOH HOH . G 6 HOH B 34 368 74 HOH HOH . G 6 HOH B 35 369 75 HOH HOH . G 6 HOH B 36 370 76 HOH HOH . G 6 HOH B 37 371 78 HOH HOH . G 6 HOH B 38 372 81 HOH HOH . G 6 HOH B 39 373 83 HOH HOH . G 6 HOH B 40 374 84 HOH HOH . G 6 HOH B 41 375 86 HOH HOH . G 6 HOH B 42 376 87 HOH HOH . G 6 HOH B 43 377 88 HOH HOH . G 6 HOH B 44 378 94 HOH HOH . G 6 HOH B 45 379 95 HOH HOH . G 6 HOH B 46 380 97 HOH HOH . G 6 HOH B 47 381 98 HOH HOH . G 6 HOH B 48 382 105 HOH HOH . G 6 HOH B 49 383 106 HOH HOH . G 6 HOH B 50 384 107 HOH HOH . G 6 HOH B 51 385 110 HOH HOH . G 6 HOH B 52 386 114 HOH HOH . G 6 HOH B 53 387 117 HOH HOH . G 6 HOH B 54 388 120 HOH HOH . G 6 HOH B 55 389 121 HOH HOH . G 6 HOH B 56 390 123 HOH HOH . G 6 HOH B 57 391 125 HOH HOH . G 6 HOH B 58 392 128 HOH HOH . G 6 HOH B 59 393 129 HOH HOH . G 6 HOH B 60 394 136 HOH HOH . G 6 HOH B 61 395 137 HOH HOH . G 6 HOH B 62 396 139 HOH HOH . G 6 HOH B 63 397 143 HOH HOH . G 6 HOH B 64 398 144 HOH HOH . G 6 HOH B 65 399 150 HOH HOH . G 6 HOH B 66 400 151 HOH HOH . G 6 HOH B 67 401 152 HOH HOH . G 6 HOH B 68 402 155 HOH HOH . G 6 HOH B 69 403 156 HOH HOH . G 6 HOH B 70 404 161 HOH HOH . G 6 HOH B 71 405 162 HOH HOH . G 6 HOH B 72 406 163 HOH HOH . G 6 HOH B 73 407 166 HOH HOH . G 6 HOH B 74 408 173 HOH HOH . G 6 HOH B 75 409 174 HOH HOH . G 6 HOH B 76 410 178 HOH HOH . G 6 HOH B 77 411 180 HOH HOH . G 6 HOH B 78 412 183 HOH HOH . G 6 HOH B 79 413 191 HOH HOH . G 6 HOH B 80 414 196 HOH HOH . G 6 HOH B 81 415 197 HOH HOH . G 6 HOH B 82 416 198 HOH HOH . G 6 HOH B 83 417 199 HOH HOH . G 6 HOH B 84 418 201 HOH HOH . G 6 HOH B 85 419 203 HOH HOH . G 6 HOH B 86 420 209 HOH HOH . G 6 HOH B 87 421 213 HOH HOH . G 6 HOH B 88 422 217 HOH HOH . G 6 HOH B 89 423 226 HOH HOH . G 6 HOH B 90 424 227 HOH HOH . G 6 HOH B 91 425 231 HOH HOH . G 6 HOH B 92 426 236 HOH HOH . G 6 HOH B 93 427 240 HOH HOH . G 6 HOH B 94 428 245 HOH HOH . G 6 HOH B 95 429 251 HOH HOH . G 6 HOH B 96 430 252 HOH HOH . G 6 HOH B 97 431 256 HOH HOH . G 6 HOH B 98 432 258 HOH HOH . G 6 HOH B 99 433 260 HOH HOH . G 6 HOH B 100 434 265 HOH HOH . G 6 HOH B 101 435 266 HOH HOH . G 6 HOH B 102 436 268 HOH HOH . G 6 HOH B 103 437 270 HOH HOH . G 6 HOH B 104 438 273 HOH HOH . G 6 HOH B 105 439 282 HOH HOH . G 6 HOH B 106 440 290 HOH HOH . G 6 HOH B 107 441 292 HOH HOH . G 6 HOH B 108 442 293 HOH HOH . G 6 HOH B 109 443 295 HOH HOH . G 6 HOH B 110 444 296 HOH HOH . G 6 HOH B 111 445 298 HOH HOH . G 6 HOH B 112 446 300 HOH HOH . G 6 HOH B 113 447 302 HOH HOH . G 6 HOH B 114 448 304 HOH HOH . G 6 HOH B 115 449 307 HOH HOH . G 6 HOH B 116 450 308 HOH HOH . G 6 HOH B 117 451 311 HOH HOH . G 6 HOH B 118 452 312 HOH HOH . G 6 HOH B 119 453 317 HOH HOH . G 6 HOH B 120 454 318 HOH HOH . G 6 HOH B 121 455 320 HOH HOH . G 6 HOH B 122 456 322 HOH HOH . G 6 HOH B 123 457 325 HOH HOH . G 6 HOH B 124 458 334 HOH HOH . G 6 HOH B 125 459 335 HOH HOH . G 6 HOH B 126 460 349 HOH HOH . G 6 HOH B 127 461 350 HOH HOH . G 6 HOH B 128 462 363 HOH HOH . G 6 HOH B 129 463 364 HOH HOH . G 6 HOH B 130 464 365 HOH HOH . G 6 HOH B 131 465 374 HOH HOH . G 6 HOH B 132 466 376 HOH HOH . G 6 HOH B 133 467 389 HOH HOH . G 6 HOH B 134 468 391 HOH HOH . G 6 HOH B 135 469 393 HOH HOH . G 6 HOH B 136 470 394 HOH HOH . G 6 HOH B 137 471 396 HOH HOH . G 6 HOH B 138 472 397 HOH HOH . G 6 HOH B 139 473 398 HOH HOH . G 6 HOH B 140 474 399 HOH HOH . G 6 HOH B 141 475 400 HOH HOH . G 6 HOH B 142 476 401 HOH HOH . G 6 HOH B 143 477 402 HOH HOH . G 6 HOH B 144 478 403 HOH HOH . G 6 HOH B 145 479 404 HOH HOH . G 6 HOH B 146 480 405 HOH HOH . G 6 HOH B 147 481 406 HOH HOH . G 6 HOH B 148 482 407 HOH HOH . G 6 HOH B 149 483 408 HOH HOH . G 6 HOH B 150 484 409 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -8.292 _atom_site.Cartn_y 43.937 _atom_site.Cartn_z 29.025 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 333 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #