data_3DT0
#
_model_server_result.job_id            i9m-GAYnMQDlwPmZvNk5nw 
_model_server_result.datetime_utc      '2024-11-21 23:53:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dt0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    3DT0 
#
_exptl.entry_id    3DT0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              336.856 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(3-chlorobenzyl)-1-(4-methylpentanoyl)-L-prolinamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.14 
_cell.angle_gamma         90 
_cell.entry_id            3DT0 
_cell.length_a            70.02 
_cell.length_b            71.38 
_cell.length_c            72.29 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DT0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C18 H25 Cl N2 O2' 
_chem_comp.formula_weight    336.856 
_chem_comp.id                16U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(3-chlorobenzyl)-1-(4-methylpentanoyl)-L-prolinamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C11 16U sing 1 n n 
C10 C15 16U sing 2 n n 
C11 C12 16U sing 3 n n 
C11 C18 16U sing 4 n n 
CL21 C29 16U sing 5 n n 
C15 C14 16U sing 6 n n 
C14 O32 16U doub 7 n n 
C14 N1 16U sing 8 n n 
N1 C4 16U sing 9 n n 
N1 C1 16U sing 10 n n 
C4 C3 16U sing 11 n n 
C3 C2 16U sing 12 n n 
C2 C1 16U sing 13 n n 
C1 C7 16U sing 14 n n 
C7 N23 16U sing 15 n n 
C7 O22 16U doub 16 n n 
N23 C24 16U sing 17 n n 
C24 C25 16U sing 18 n n 
C25 C30 16U doub 19 n y 
C25 C26 16U sing 20 n y 
C30 C29 16U sing 21 n y 
C29 C28 16U doub 22 n y 
C28 C27 16U sing 23 n y 
C27 C26 16U doub 24 n y 
C10 H10 16U sing 25 n n 
C10 H10A 16U sing 26 n n 
C11 H11 16U sing 27 n n 
C12 H12 16U sing 28 n n 
C12 H12A 16U sing 29 n n 
C12 H12B 16U sing 30 n n 
C18 H18 16U sing 31 n n 
C18 H18A 16U sing 32 n n 
C18 H18B 16U sing 33 n n 
C15 H15 16U sing 34 n n 
C15 H15A 16U sing 35 n n 
C4 H4 16U sing 36 n n 
C4 H4A 16U sing 37 n n 
C3 H3 16U sing 38 n n 
C3 H3A 16U sing 39 n n 
C2 H2 16U sing 40 n n 
C2 H2A 16U sing 41 n n 
C1 H1 16U sing 42 n n 
N23 HN23 16U sing 43 n n 
C24 H24 16U sing 44 n n 
C24 H24A 16U sing 45 n n 
C30 H30 16U sing 46 n n 
C28 H28 16U sing 47 n n 
C27 H27 16U sing 48 n n 
C26 H26 16U sing 49 n n 
#
_atom_sites.entry_id                     3DT0 
_atom_sites.fract_transf_matrix[1][1]    0.014282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002554 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01401 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014053 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 16U H 1 901 901 16U 16U . 
E 5 NA H 1 902 902 NA NA . 
F 5 NA H 1 903 903 NA NA . 
G 6 HOH L 1 1006 1006 HOH HOH . 
G 6 HOH L 2 1015 1015 HOH HOH . 
G 6 HOH L 3 1021 1021 HOH HOH . 
G 6 HOH L 4 1027 1027 HOH HOH . 
G 6 HOH L 5 1028 1028 HOH HOH . 
G 6 HOH L 6 1039 1039 HOH HOH . 
G 6 HOH L 7 1042 1042 HOH HOH . 
G 6 HOH L 8 1043 1043 HOH HOH . 
G 6 HOH L 9 1081 1081 HOH HOH . 
G 6 HOH L 10 1083 1083 HOH HOH . 
G 6 HOH L 11 1092 1092 HOH HOH . 
G 6 HOH L 12 1100 1100 HOH HOH . 
H 6 HOH H 1 1001 1001 HOH HOH . 
H 6 HOH H 2 1002 1002 HOH HOH . 
H 6 HOH H 3 1003 1003 HOH HOH . 
H 6 HOH H 4 1004 1004 HOH HOH . 
H 6 HOH H 5 1005 1005 HOH HOH . 
H 6 HOH H 6 1007 1007 HOH HOH . 
H 6 HOH H 7 1008 1008 HOH HOH . 
H 6 HOH H 8 1009 1009 HOH HOH . 
H 6 HOH H 9 1010 1010 HOH HOH . 
H 6 HOH H 10 1011 1011 HOH HOH . 
H 6 HOH H 11 1012 1012 HOH HOH . 
H 6 HOH H 12 1013 1013 HOH HOH . 
H 6 HOH H 13 1014 1014 HOH HOH . 
H 6 HOH H 14 1016 1016 HOH HOH . 
H 6 HOH H 15 1017 1017 HOH HOH . 
H 6 HOH H 16 1018 1018 HOH HOH . 
H 6 HOH H 17 1019 1019 HOH HOH . 
H 6 HOH H 18 1020 1020 HOH HOH . 
H 6 HOH H 19 1022 1022 HOH HOH . 
H 6 HOH H 20 1023 1023 HOH HOH . 
H 6 HOH H 21 1024 1024 HOH HOH . 
H 6 HOH H 22 1025 1025 HOH HOH . 
H 6 HOH H 23 1026 1026 HOH HOH . 
H 6 HOH H 24 1029 1029 HOH HOH . 
H 6 HOH H 25 1030 1030 HOH HOH . 
H 6 HOH H 26 1031 1031 HOH HOH . 
H 6 HOH H 27 1032 1032 HOH HOH . 
H 6 HOH H 28 1033 1033 HOH HOH . 
H 6 HOH H 29 1034 1034 HOH HOH . 
H 6 HOH H 30 1035 1035 HOH HOH . 
H 6 HOH H 31 1036 1036 HOH HOH . 
H 6 HOH H 32 1037 1037 HOH HOH . 
H 6 HOH H 33 1038 1038 HOH HOH . 
H 6 HOH H 34 1040 1040 HOH HOH . 
H 6 HOH H 35 1041 1041 HOH HOH . 
H 6 HOH H 36 1044 1044 HOH HOH . 
H 6 HOH H 37 1045 1045 HOH HOH . 
H 6 HOH H 38 1046 1046 HOH HOH . 
H 6 HOH H 39 1047 1047 HOH HOH . 
H 6 HOH H 40 1048 1048 HOH HOH . 
H 6 HOH H 41 1049 1049 HOH HOH . 
H 6 HOH H 42 1051 1051 HOH HOH . 
H 6 HOH H 43 1052 1052 HOH HOH . 
H 6 HOH H 44 1053 1053 HOH HOH . 
H 6 HOH H 45 1054 1054 HOH HOH . 
H 6 HOH H 46 1055 1055 HOH HOH . 
H 6 HOH H 47 1056 1056 HOH HOH . 
H 6 HOH H 48 1057 1057 HOH HOH . 
H 6 HOH H 49 1058 1058 HOH HOH . 
H 6 HOH H 50 1059 1059 HOH HOH . 
H 6 HOH H 51 1060 1060 HOH HOH . 
H 6 HOH H 52 1061 1061 HOH HOH . 
H 6 HOH H 53 1062 1062 HOH HOH . 
H 6 HOH H 54 1063 1063 HOH HOH . 
H 6 HOH H 55 1064 1064 HOH HOH . 
H 6 HOH H 56 1065 1065 HOH HOH . 
H 6 HOH H 57 1066 1066 HOH HOH . 
H 6 HOH H 58 1067 1067 HOH HOH . 
H 6 HOH H 59 1068 1068 HOH HOH . 
H 6 HOH H 60 1069 1069 HOH HOH . 
H 6 HOH H 61 1070 1070 HOH HOH . 
H 6 HOH H 62 1071 1071 HOH HOH . 
H 6 HOH H 63 1072 1072 HOH HOH . 
H 6 HOH H 64 1073 1073 HOH HOH . 
H 6 HOH H 65 1074 1074 HOH HOH . 
H 6 HOH H 66 1075 1075 HOH HOH . 
H 6 HOH H 67 1076 1076 HOH HOH . 
H 6 HOH H 68 1077 1077 HOH HOH . 
H 6 HOH H 69 1078 1078 HOH HOH . 
H 6 HOH H 70 1079 1079 HOH HOH . 
H 6 HOH H 71 1080 1080 HOH HOH . 
H 6 HOH H 72 1082 1082 HOH HOH . 
H 6 HOH H 73 1084 1084 HOH HOH . 
H 6 HOH H 74 1085 1085 HOH HOH . 
H 6 HOH H 75 1086 1086 HOH HOH . 
H 6 HOH H 76 1087 1087 HOH HOH . 
H 6 HOH H 77 1088 1088 HOH HOH . 
H 6 HOH H 78 1089 1089 HOH HOH . 
H 6 HOH H 79 1090 1090 HOH HOH . 
H 6 HOH H 80 1091 1091 HOH HOH . 
H 6 HOH H 81 1093 1093 HOH HOH . 
H 6 HOH H 82 1094 1094 HOH HOH . 
H 6 HOH H 83 1096 1096 HOH HOH . 
H 6 HOH H 84 1097 1097 HOH HOH . 
H 6 HOH H 85 1099 1099 HOH HOH . 
H 6 HOH H 86 1102 1102 HOH HOH . 
I 6 HOH I 1 1095 1095 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 16U . . . D 4 17.538 -15.007 23.239 1 47.35 ? C15 16U 901 H 1 
HETATM 2 C C10 16U . . . D 4 18.249 -14.755 24.603 1 47.88 ? C10 16U 901 H 1 
HETATM 3 C C11 16U . . . D 4 19.667 -14.127 24.46 1 51.5 ? C11 16U 901 H 1 
HETATM 4 C C12 16U . . . D 4 20.723 -15.143 23.949 1 64.05 ? C12 16U 901 H 1 
HETATM 5 C C18 16U . . . D 4 20.147 -13.451 25.767 1 53.61 ? C18 16U 901 H 1 
HETATM 6 C C14 16U . . . D 4 17.256 -13.684 22.536 1 44.77 ? C14 16U 901 H 1 
HETATM 7 O O32 16U . . . D 4 16.181 -13.17 22.821 1 33.73 ? O32 16U 901 H 1 
HETATM 8 N N1 16U . . . D 4 18.093 -13.083 21.644 1 41.66 ? N1 16U 901 H 1 
HETATM 9 C C1 16U . . . D 4 17.823 -11.757 21.122 1 40.34 ? C1 16U 901 H 1 
HETATM 10 C C7 16U . . . D 4 16.446 -11.546 20.55 1 39.17 ? C7 16U 901 H 1 
HETATM 11 O O22 16U . . . D 4 15.839 -12.469 20.02 1 64.45 ? O22 16U 901 H 1 
HETATM 12 C C2 16U . . . D 4 18.918 -11.605 20.049 1 40.13 ? C2 16U 901 H 1 
HETATM 13 C C3 16U . . . D 4 19.573 -12.984 19.87 1 35.09 ? C3 16U 901 H 1 
HETATM 14 C C4 16U . . . D 4 19.338 -13.72 21.206 1 35.91 ? C4 16U 901 H 1 
HETATM 15 N N23 16U . . . D 4 15.869 -10.319 20.618 1 29.35 ? N23 16U 901 H 1 
HETATM 16 C C24 16U . . . D 4 14.487 -10.169 20.142 1 23.85 ? C24 16U 901 H 1 
HETATM 17 C C25 16U . . . D 4 13.505 -10.175 21.325 1 24.61 ? C25 16U 901 H 1 
HETATM 18 C C26 16U . . . D 4 12.711 -11.312 21.518 1 19.82 ? C26 16U 901 H 1 
HETATM 19 C C27 16U . . . D 4 11.805 -11.37 22.575 1 21.57 ? C27 16U 901 H 1 
HETATM 20 C C28 16U . . . D 4 11.688 -10.287 23.449 1 26.68 ? C28 16U 901 H 1 
HETATM 21 C C29 16U . . . D 4 12.472 -9.143 23.272 1 21.56 ? C29 16U 901 H 1 
HETATM 22 C C30 16U . . . D 4 13.379 -9.092 22.209 1 20.68 ? C30 16U 901 H 1 
HETATM 23 CL CL21 16U . . . D 4 12.29 -7.803 24.397 1 29.17 ? CL21 16U 901 H 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           23 
#