data_3DT0 # _model_server_result.job_id RGtyMzGSDC5gR0c5baMr9w _model_server_result.datetime_utc '2024-11-24 20:10:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":902}' # _entry.id 3DT0 # _exptl.entry_id 3DT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.14 _cell.angle_gamma 90 _cell.entry_id 3DT0 _cell.length_a 70.02 _cell.length_b 71.38 _cell.length_c 72.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DT0 _atom_sites.fract_transf_matrix[1][1] 0.014282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002554 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 16U H 1 901 901 16U 16U . E 5 NA H 1 902 902 NA NA . F 5 NA H 1 903 903 NA NA . G 6 HOH L 1 1006 1006 HOH HOH . G 6 HOH L 2 1015 1015 HOH HOH . G 6 HOH L 3 1021 1021 HOH HOH . G 6 HOH L 4 1027 1027 HOH HOH . G 6 HOH L 5 1028 1028 HOH HOH . G 6 HOH L 6 1039 1039 HOH HOH . G 6 HOH L 7 1042 1042 HOH HOH . G 6 HOH L 8 1043 1043 HOH HOH . G 6 HOH L 9 1081 1081 HOH HOH . G 6 HOH L 10 1083 1083 HOH HOH . G 6 HOH L 11 1092 1092 HOH HOH . G 6 HOH L 12 1100 1100 HOH HOH . H 6 HOH H 1 1001 1001 HOH HOH . H 6 HOH H 2 1002 1002 HOH HOH . H 6 HOH H 3 1003 1003 HOH HOH . H 6 HOH H 4 1004 1004 HOH HOH . H 6 HOH H 5 1005 1005 HOH HOH . H 6 HOH H 6 1007 1007 HOH HOH . H 6 HOH H 7 1008 1008 HOH HOH . H 6 HOH H 8 1009 1009 HOH HOH . H 6 HOH H 9 1010 1010 HOH HOH . H 6 HOH H 10 1011 1011 HOH HOH . H 6 HOH H 11 1012 1012 HOH HOH . H 6 HOH H 12 1013 1013 HOH HOH . H 6 HOH H 13 1014 1014 HOH HOH . H 6 HOH H 14 1016 1016 HOH HOH . H 6 HOH H 15 1017 1017 HOH HOH . H 6 HOH H 16 1018 1018 HOH HOH . H 6 HOH H 17 1019 1019 HOH HOH . H 6 HOH H 18 1020 1020 HOH HOH . H 6 HOH H 19 1022 1022 HOH HOH . H 6 HOH H 20 1023 1023 HOH HOH . H 6 HOH H 21 1024 1024 HOH HOH . H 6 HOH H 22 1025 1025 HOH HOH . H 6 HOH H 23 1026 1026 HOH HOH . H 6 HOH H 24 1029 1029 HOH HOH . H 6 HOH H 25 1030 1030 HOH HOH . H 6 HOH H 26 1031 1031 HOH HOH . H 6 HOH H 27 1032 1032 HOH HOH . H 6 HOH H 28 1033 1033 HOH HOH . H 6 HOH H 29 1034 1034 HOH HOH . H 6 HOH H 30 1035 1035 HOH HOH . H 6 HOH H 31 1036 1036 HOH HOH . H 6 HOH H 32 1037 1037 HOH HOH . H 6 HOH H 33 1038 1038 HOH HOH . H 6 HOH H 34 1040 1040 HOH HOH . H 6 HOH H 35 1041 1041 HOH HOH . H 6 HOH H 36 1044 1044 HOH HOH . H 6 HOH H 37 1045 1045 HOH HOH . H 6 HOH H 38 1046 1046 HOH HOH . H 6 HOH H 39 1047 1047 HOH HOH . H 6 HOH H 40 1048 1048 HOH HOH . H 6 HOH H 41 1049 1049 HOH HOH . H 6 HOH H 42 1051 1051 HOH HOH . H 6 HOH H 43 1052 1052 HOH HOH . H 6 HOH H 44 1053 1053 HOH HOH . H 6 HOH H 45 1054 1054 HOH HOH . H 6 HOH H 46 1055 1055 HOH HOH . H 6 HOH H 47 1056 1056 HOH HOH . H 6 HOH H 48 1057 1057 HOH HOH . H 6 HOH H 49 1058 1058 HOH HOH . H 6 HOH H 50 1059 1059 HOH HOH . H 6 HOH H 51 1060 1060 HOH HOH . H 6 HOH H 52 1061 1061 HOH HOH . H 6 HOH H 53 1062 1062 HOH HOH . H 6 HOH H 54 1063 1063 HOH HOH . H 6 HOH H 55 1064 1064 HOH HOH . H 6 HOH H 56 1065 1065 HOH HOH . H 6 HOH H 57 1066 1066 HOH HOH . H 6 HOH H 58 1067 1067 HOH HOH . H 6 HOH H 59 1068 1068 HOH HOH . H 6 HOH H 60 1069 1069 HOH HOH . H 6 HOH H 61 1070 1070 HOH HOH . H 6 HOH H 62 1071 1071 HOH HOH . H 6 HOH H 63 1072 1072 HOH HOH . H 6 HOH H 64 1073 1073 HOH HOH . H 6 HOH H 65 1074 1074 HOH HOH . H 6 HOH H 66 1075 1075 HOH HOH . H 6 HOH H 67 1076 1076 HOH HOH . H 6 HOH H 68 1077 1077 HOH HOH . H 6 HOH H 69 1078 1078 HOH HOH . H 6 HOH H 70 1079 1079 HOH HOH . H 6 HOH H 71 1080 1080 HOH HOH . H 6 HOH H 72 1082 1082 HOH HOH . H 6 HOH H 73 1084 1084 HOH HOH . H 6 HOH H 74 1085 1085 HOH HOH . H 6 HOH H 75 1086 1086 HOH HOH . H 6 HOH H 76 1087 1087 HOH HOH . H 6 HOH H 77 1088 1088 HOH HOH . H 6 HOH H 78 1089 1089 HOH HOH . H 6 HOH H 79 1090 1090 HOH HOH . H 6 HOH H 80 1091 1091 HOH HOH . H 6 HOH H 81 1093 1093 HOH HOH . H 6 HOH H 82 1094 1094 HOH HOH . H 6 HOH H 83 1096 1096 HOH HOH . H 6 HOH H 84 1097 1097 HOH HOH . H 6 HOH H 85 1099 1099 HOH HOH . H 6 HOH H 86 1102 1102 HOH HOH . I 6 HOH I 1 1095 1095 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 6.346 _atom_site.Cartn_y -12.793 _atom_site.Cartn_z 29.677 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 902 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #