data_3DT9 # _model_server_result.job_id W-ETZ7rSYW5ORyQ-ZLiqDQ _model_server_result.datetime_utc '2024-10-10 00:22:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":347}' # _entry.id 3DT9 # _exptl.entry_id 3DT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-1,2,2-TRIMETHYLPROPYL (R)-METHYLPHOSPHINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DT9 _cell.length_a 81.356 _cell.length_b 81.356 _cell.length_c 72.969 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 47 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 47 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id P1 _struct_conn.ptnr2_label_comp_id GD7 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GD7 _struct_conn.ptnr2_auth_seq_id 347 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.577 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H17 O2 P' _chem_comp.formula_weight 164.182 _chem_comp.id GD7 _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-1,2,2-TRIMETHYLPROPYL (R)-METHYLPHOSPHINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 GD7 sing 83 n n C1 H11 GD7 sing 84 n n C1 H12 GD7 sing 85 n n C1 H13 GD7 sing 86 n n C2 C6 GD7 sing 87 n n C2 H21 GD7 sing 88 n n C2 H22 GD7 sing 89 n n C2 H23 GD7 sing 90 n n C3 C6 GD7 sing 91 n n C3 H31 GD7 sing 92 n n C3 H32 GD7 sing 93 n n C3 H33 GD7 sing 94 n n C4 C5 GD7 sing 95 n n C4 H41 GD7 sing 96 n n C4 H42 GD7 sing 97 n n C4 H43 GD7 sing 98 n n C5 C6 GD7 sing 99 n n C5 OH GD7 sing 100 n n C5 H5 GD7 sing 101 n n C7 P1 GD7 sing 102 n n C7 H71 GD7 sing 103 n n C7 H72 GD7 sing 104 n n C7 H73 GD7 sing 105 n n OH P1 GD7 sing 106 n n P1 O11 GD7 doub 107 n n P1 HP1 GD7 sing 108 n n # _atom_sites.entry_id 3DT9 _atom_sites.fract_transf_matrix[1][1] 0.012292 _atom_sites.fract_transf_matrix[1][2] 0.007097 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GD7 A 1 347 347 GD7 GD7 . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1028 1028 HOH HOH . C 3 HOH A 29 1029 1029 HOH HOH . C 3 HOH A 30 1030 1030 HOH HOH . C 3 HOH A 31 1031 1031 HOH HOH . C 3 HOH A 32 1032 1032 HOH HOH . C 3 HOH A 33 1033 1033 HOH HOH . C 3 HOH A 34 1034 1034 HOH HOH . C 3 HOH A 35 1035 1035 HOH HOH . C 3 HOH A 36 1036 1036 HOH HOH . C 3 HOH A 37 1037 1037 HOH HOH . C 3 HOH A 38 1038 1038 HOH HOH . C 3 HOH A 39 1039 1039 HOH HOH . C 3 HOH A 40 1040 1040 HOH HOH . C 3 HOH A 41 1041 1041 HOH HOH . C 3 HOH A 42 1042 1042 HOH HOH . C 3 HOH A 43 1043 1043 HOH HOH . C 3 HOH A 44 1044 1044 HOH HOH . C 3 HOH A 45 1045 1045 HOH HOH . C 3 HOH A 46 1046 1046 HOH HOH . C 3 HOH A 47 1047 1047 HOH HOH . C 3 HOH A 48 1048 1048 HOH HOH . C 3 HOH A 49 1049 1049 HOH HOH . C 3 HOH A 50 1050 1050 HOH HOH . C 3 HOH A 51 1051 1051 HOH HOH . C 3 HOH A 52 1052 1052 HOH HOH . C 3 HOH A 53 1053 1053 HOH HOH . C 3 HOH A 54 1054 1054 HOH HOH . C 3 HOH A 55 1055 1055 HOH HOH . C 3 HOH A 56 1056 1056 HOH HOH . C 3 HOH A 57 1057 1057 HOH HOH . C 3 HOH A 58 1058 1058 HOH HOH . C 3 HOH A 59 1059 1059 HOH HOH . C 3 HOH A 60 1060 1060 HOH HOH . C 3 HOH A 61 1061 1061 HOH HOH . C 3 HOH A 62 1062 1062 HOH HOH . C 3 HOH A 63 1063 1063 HOH HOH . C 3 HOH A 64 1064 1064 HOH HOH . C 3 HOH A 65 1065 1065 HOH HOH . C 3 HOH A 66 1066 1066 HOH HOH . C 3 HOH A 67 1067 1067 HOH HOH . C 3 HOH A 68 1068 1068 HOH HOH . C 3 HOH A 69 1069 1069 HOH HOH . C 3 HOH A 70 1070 1070 HOH HOH . C 3 HOH A 71 1072 1072 HOH HOH . C 3 HOH A 72 1073 1073 HOH HOH . C 3 HOH A 73 1074 1074 HOH HOH . C 3 HOH A 74 1075 1075 HOH HOH . C 3 HOH A 75 1076 1076 HOH HOH . C 3 HOH A 76 1077 1077 HOH HOH . C 3 HOH A 77 1078 1078 HOH HOH . C 3 HOH A 78 1079 1079 HOH HOH . C 3 HOH A 79 1080 1080 HOH HOH . C 3 HOH A 80 1081 1081 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GD7 . . . B 2 65.22 24.833 -22.905 1 23.58 ? C1 GD7 347 A 1 HETATM 2 C C2 GD7 . . . B 2 63.742 26.193 -24.337 1 22.55 ? C2 GD7 347 A 1 HETATM 3 C C3 GD7 . . . B 2 64.68 24.012 -25.188 1 20.27 ? C3 GD7 347 A 1 HETATM 4 C C4 GD7 . . . B 2 62.193 24.805 -22.304 1 19.31 ? C4 GD7 347 A 1 HETATM 5 C C5 GD7 . . . B 2 62.894 24.005 -23.425 1 22.02 ? C5 GD7 347 A 1 HETATM 6 C C6 GD7 . . . B 2 64.111 24.734 -23.963 1 22.99 ? C6 GD7 347 A 1 HETATM 7 C C7 GD7 . . . B 2 61.146 21.217 -21.881 1 17.68 ? C7 GD7 347 A 1 HETATM 8 O OH GD7 . . . B 2 63.242 22.649 -23.04 1 19.38 ? OH GD7 347 A 1 HETATM 9 P P1 GD7 . . . B 2 62.11 21.548 -23.374 1 18.15 ? P1 GD7 347 A 1 HETATM 10 O O11 GD7 . . . B 2 61.204 21.997 -24.579 1 16.23 ? O11 GD7 347 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #