data_3DTR
#
_model_server_result.job_id            Fu3TxwQmhI_WbGOy7wuh4A 
_model_server_result.datetime_utc      '2024-11-14 23:31:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dtr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":701}' 
#
_entry.id    3DTR 
#
_exptl.entry_id    3DTR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DTR 
_cell.length_a            141.7 
_cell.length_b            141.7 
_cell.length_c            187 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DTR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 P N N 
? 7 Q N N 
? 7 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 E MG BCL . L BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 D MG BCL . L BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc5 B NE2 HIS 182 M HIS 182 1_555 I MG BCL . M BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 J MG BCL . M BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc8 B OE1 GLU 234 M GLU 234 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc9 B OE2 GLU 234 M GLU 234 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 722 n n 
N1 CM1 LDA sing 723 n n 
N1 CM2 LDA sing 724 n n 
N1 C1 LDA sing 725 n n 
CM1 HM11 LDA sing 726 n n 
CM1 HM12 LDA sing 727 n n 
CM1 HM13 LDA sing 728 n n 
CM2 HM21 LDA sing 729 n n 
CM2 HM22 LDA sing 730 n n 
CM2 HM23 LDA sing 731 n n 
C1 C2 LDA sing 732 n n 
C1 H11 LDA sing 733 n n 
C1 H12 LDA sing 734 n n 
C2 C3 LDA sing 735 n n 
C2 H21 LDA sing 736 n n 
C2 H22 LDA sing 737 n n 
C3 C4 LDA sing 738 n n 
C3 H31 LDA sing 739 n n 
C3 H32 LDA sing 740 n n 
C4 C5 LDA sing 741 n n 
C4 H41 LDA sing 742 n n 
C4 H42 LDA sing 743 n n 
C5 C6 LDA sing 744 n n 
C5 H51 LDA sing 745 n n 
C5 H52 LDA sing 746 n n 
C6 C7 LDA sing 747 n n 
C6 H61 LDA sing 748 n n 
C6 H62 LDA sing 749 n n 
C7 C8 LDA sing 750 n n 
C7 H71 LDA sing 751 n n 
C7 H72 LDA sing 752 n n 
C8 C9 LDA sing 753 n n 
C8 H81 LDA sing 754 n n 
C8 H82 LDA sing 755 n n 
C9 C10 LDA sing 756 n n 
C9 H91 LDA sing 757 n n 
C9 H92 LDA sing 758 n n 
C10 C11 LDA sing 759 n n 
C10 H101 LDA sing 760 n n 
C10 H102 LDA sing 761 n n 
C11 C12 LDA sing 762 n n 
C11 H111 LDA sing 763 n n 
C11 H112 LDA sing 764 n n 
C12 H121 LDA sing 765 n n 
C12 H122 LDA sing 766 n n 
C12 H123 LDA sing 767 n n 
#
_atom_sites.entry_id                     3DTR 
_atom_sites.fract_transf_matrix[1][1]    0.007057 
_atom_sites.fract_transf_matrix[1][2]    0.004074 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008149 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005348 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BCL L 1 502 502 BCL BCL . 
E 4 BCL L 1 501 501 BCL BCL . 
F 5 BPH L 1 503 503 BPH BPH . 
G 6 U10 L 1 504 504 U10 U10 . 
H 7 LDA L 1 709 709 LDA LDA . 
I 4 BCL M 1 501 501 BCL BCL . 
J 4 BCL M 1 502 502 BCL BCL . 
K 5 BPH M 1 503 503 BPH BPH . 
L 8 FE M 1 500 500 FE FE . 
M 6 U10 M 1 504 504 U10 U10 . 
N 9 SPN M 1 600 600 SPN SPN . 
O 10 CDL M 1 800 800 CDL CDL . 
P 7 LDA M 1 701 701 LDA LDA . 
Q 7 LDA M 1 704 704 LDA LDA . 
R 7 LDA H 1 703 703 LDA LDA . 
S 11 HOH L 1 1001 710 HOH HOH . 
S 11 HOH L 2 1002 711 HOH HOH . 
S 11 HOH L 3 1003 712 HOH HOH . 
S 11 HOH L 4 1004 713 HOH HOH . 
S 11 HOH L 5 1005 714 HOH HOH . 
S 11 HOH L 6 1006 715 HOH HOH . 
S 11 HOH L 7 1007 716 HOH HOH . 
S 11 HOH L 8 1008 717 HOH HOH . 
S 11 HOH L 9 1009 718 HOH HOH . 
S 11 HOH L 10 1010 719 HOH HOH . 
S 11 HOH L 11 1011 720 HOH HOH . 
S 11 HOH L 12 1012 721 HOH HOH . 
S 11 HOH L 13 1013 722 HOH HOH . 
S 11 HOH L 14 1014 723 HOH HOH . 
S 11 HOH L 15 1015 724 HOH HOH . 
S 11 HOH L 16 1016 725 HOH HOH . 
S 11 HOH L 17 1017 726 HOH HOH . 
S 11 HOH L 18 1018 727 HOH HOH . 
S 11 HOH L 19 1019 728 HOH HOH . 
S 11 HOH L 20 1020 729 HOH HOH . 
S 11 HOH L 21 1021 730 HOH HOH . 
S 11 HOH L 22 1022 731 HOH HOH . 
S 11 HOH L 23 1023 732 HOH HOH . 
S 11 HOH L 24 1024 733 HOH HOH . 
S 11 HOH L 25 1025 734 HOH HOH . 
S 11 HOH L 26 1026 735 HOH HOH . 
S 11 HOH L 27 1027 736 HOH HOH . 
S 11 HOH L 28 1028 737 HOH HOH . 
S 11 HOH L 29 1029 738 HOH HOH . 
S 11 HOH L 30 1030 739 HOH HOH . 
S 11 HOH L 31 1031 740 HOH HOH . 
S 11 HOH L 32 1032 741 HOH HOH . 
S 11 HOH L 33 1033 742 HOH HOH . 
S 11 HOH L 34 1034 743 HOH HOH . 
S 11 HOH L 35 1035 744 HOH HOH . 
S 11 HOH L 36 1036 745 HOH HOH . 
S 11 HOH L 37 1037 746 HOH HOH . 
S 11 HOH L 38 1038 747 HOH HOH . 
S 11 HOH L 39 1039 748 HOH HOH . 
S 11 HOH L 40 1040 749 HOH HOH . 
T 11 HOH M 1 1041 801 HOH HOH . 
T 11 HOH M 2 1042 802 HOH HOH . 
T 11 HOH M 3 1043 803 HOH HOH . 
T 11 HOH M 4 1044 804 HOH HOH . 
T 11 HOH M 5 1045 805 HOH HOH . 
T 11 HOH M 6 1046 806 HOH HOH . 
T 11 HOH M 7 1047 807 HOH HOH . 
T 11 HOH M 8 1048 808 HOH HOH . 
T 11 HOH M 9 1049 809 HOH HOH . 
T 11 HOH M 10 1050 810 HOH HOH . 
T 11 HOH M 11 1051 811 HOH HOH . 
T 11 HOH M 12 1052 812 HOH HOH . 
T 11 HOH M 13 1053 813 HOH HOH . 
T 11 HOH M 14 1054 814 HOH HOH . 
T 11 HOH M 15 1055 815 HOH HOH . 
T 11 HOH M 16 1056 816 HOH HOH . 
T 11 HOH M 17 1057 819 HOH HOH . 
T 11 HOH M 18 1058 820 HOH HOH . 
T 11 HOH M 19 1059 821 HOH HOH . 
T 11 HOH M 20 1060 822 HOH HOH . 
T 11 HOH M 21 1061 823 HOH HOH . 
T 11 HOH M 22 1062 824 HOH HOH . 
T 11 HOH M 23 1063 825 HOH HOH . 
T 11 HOH M 24 1064 826 HOH HOH . 
T 11 HOH M 25 1065 827 HOH HOH . 
T 11 HOH M 26 1066 828 HOH HOH . 
T 11 HOH M 27 1067 829 HOH HOH . 
T 11 HOH M 28 1068 830 HOH HOH . 
T 11 HOH M 29 1069 831 HOH HOH . 
T 11 HOH M 30 1070 832 HOH HOH . 
T 11 HOH M 31 1071 833 HOH HOH . 
T 11 HOH M 32 1072 834 HOH HOH . 
T 11 HOH M 33 1073 835 HOH HOH . 
T 11 HOH M 34 1074 836 HOH HOH . 
T 11 HOH M 35 1075 837 HOH HOH . 
T 11 HOH M 36 1076 838 HOH HOH . 
T 11 HOH M 37 1077 839 HOH HOH . 
T 11 HOH M 38 1078 840 HOH HOH . 
U 11 HOH H 1 1081 704 HOH HOH . 
U 11 HOH H 2 1082 705 HOH HOH . 
U 11 HOH H 3 1083 706 HOH HOH . 
U 11 HOH H 4 1084 707 HOH HOH . 
U 11 HOH H 5 1085 708 HOH HOH . 
U 11 HOH H 6 1086 709 HOH HOH . 
U 11 HOH H 7 1087 710 HOH HOH . 
U 11 HOH H 8 1088 711 HOH HOH . 
U 11 HOH H 9 1089 712 HOH HOH . 
U 11 HOH H 10 1090 713 HOH HOH . 
U 11 HOH H 11 1091 714 HOH HOH . 
U 11 HOH H 12 1092 715 HOH HOH . 
U 11 HOH H 13 1093 716 HOH HOH . 
U 11 HOH H 14 1094 717 HOH HOH . 
U 11 HOH H 15 1095 718 HOH HOH . 
U 11 HOH H 16 1096 719 HOH HOH . 
U 11 HOH H 17 1097 720 HOH HOH . 
U 11 HOH H 18 1098 721 HOH HOH . 
U 11 HOH H 19 1099 722 HOH HOH . 
U 11 HOH H 20 1100 723 HOH HOH . 
U 11 HOH H 21 1101 724 HOH HOH . 
U 11 HOH H 22 1102 725 HOH HOH . 
U 11 HOH H 23 1103 726 HOH HOH . 
U 11 HOH H 24 1104 727 HOH HOH . 
U 11 HOH H 25 1105 728 HOH HOH . 
U 11 HOH H 26 1106 729 HOH HOH . 
U 11 HOH H 27 1107 730 HOH HOH . 
U 11 HOH H 28 1108 731 HOH HOH . 
U 11 HOH H 29 1109 732 HOH HOH . 
U 11 HOH H 30 1110 733 HOH HOH . 
U 11 HOH H 31 1111 734 HOH HOH . 
U 11 HOH H 32 1112 735 HOH HOH . 
U 11 HOH H 33 1113 736 HOH HOH . 
U 11 HOH H 34 1114 737 HOH HOH . 
U 11 HOH H 35 1115 738 HOH HOH . 
U 11 HOH H 36 1116 739 HOH HOH . 
U 11 HOH H 37 1117 740 HOH HOH . 
U 11 HOH H 38 1118 741 HOH HOH . 
U 11 HOH H 39 1119 742 HOH HOH . 
U 11 HOH H 40 1120 743 HOH HOH . 
U 11 HOH H 41 1121 744 HOH HOH . 
U 11 HOH H 42 1122 745 HOH HOH . 
U 11 HOH H 43 1123 746 HOH HOH . 
U 11 HOH H 44 1124 747 HOH HOH . 
U 11 HOH H 45 1125 748 HOH HOH . 
U 11 HOH H 46 1126 749 HOH HOH . 
U 11 HOH H 47 1127 750 HOH HOH . 
U 11 HOH H 48 1128 751 HOH HOH . 
U 11 HOH H 49 1129 752 HOH HOH . 
U 11 HOH H 50 1130 753 HOH HOH . 
U 11 HOH H 51 1131 754 HOH HOH . 
U 11 HOH H 52 1132 755 HOH HOH . 
U 11 HOH H 53 1133 756 HOH HOH . 
U 11 HOH H 54 1134 757 HOH HOH . 
U 11 HOH H 55 1135 758 HOH HOH . 
U 11 HOH H 56 1136 759 HOH HOH . 
U 11 HOH H 57 1137 760 HOH HOH . 
U 11 HOH H 58 1138 761 HOH HOH . 
U 11 HOH H 59 1139 762 HOH HOH . 
U 11 HOH H 60 1140 763 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . P 7 19.208 101.673 24.429 1 74.6 ? N1 LDA 701 M 1 
HETATM 2 O O1 LDA . . . P 7 19.432 101.796 25.614 1 74.94 ? O1 LDA 701 M 1 
HETATM 3 C CM1 LDA . . . P 7 18.072 102.54 24.039 1 74.51 ? CM1 LDA 701 M 1 
HETATM 4 C CM2 LDA . . . P 7 20.392 102.084 23.686 1 75.13 ? CM2 LDA 701 M 1 
HETATM 5 C C1 LDA . . . P 7 18.901 100.244 24.142 1 73.17 ? C1 LDA 701 M 1 
HETATM 6 C C2 LDA . . . P 7 17.935 99.108 23.79 1 70.09 ? C2 LDA 701 M 1 
HETATM 7 C C3 LDA . . . P 7 18.679 97.773 23.675 1 70.11 ? C3 LDA 701 M 1 
HETATM 8 C C4 LDA . . . P 7 18.308 97.012 22.4 1 68.73 ? C4 LDA 701 M 1 
HETATM 9 C C5 LDA . . . P 7 19.185 95.769 22.192 1 69.17 ? C5 LDA 701 M 1 
HETATM 10 C C6 LDA . . . P 7 18.884 95.094 20.864 1 68.76 ? C6 LDA 701 M 1 
HETATM 11 C C7 LDA . . . P 7 20.14 94.559 20.236 1 68.39 ? C7 LDA 701 M 1 
HETATM 12 C C8 LDA . . . P 7 20.505 93.162 20.766 1 67.95 ? C8 LDA 701 M 1 
HETATM 13 C C9 LDA . . . P 7 21.818 92.654 20.113 1 67.03 ? C9 LDA 701 M 1 
HETATM 14 C C10 LDA . . . P 7 21.718 91.23 19.53 1 65.54 ? C10 LDA 701 M 1 
HETATM 15 C C11 LDA . . . P 7 22.885 90.929 18.57 1 65.37 ? C11 LDA 701 M 1 
HETATM 16 C C12 LDA . . . P 7 24.039 90.147 19.202 1 62.85 ? C12 LDA 701 M 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#