data_3DTR # _model_server_result.job_id PH5zsE115bQ9HVx-ebswgA _model_server_result.datetime_utc '2024-11-22 11:10:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dtr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":703}' # _entry.id 3DTR # _exptl.entry_id 3DTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DTR _cell.length_a 141.7 _cell.length_b 141.7 _cell.length_c 187 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 P N N ? 7 Q N N ? 7 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 E MG BCL . L BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 D MG BCL . L BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 B NE2 HIS 182 M HIS 182 1_555 I MG BCL . M BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 J MG BCL . M BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc8 B OE1 GLU 234 M GLU 234 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc9 B OE2 GLU 234 M GLU 234 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 722 n n N1 CM1 LDA sing 723 n n N1 CM2 LDA sing 724 n n N1 C1 LDA sing 725 n n CM1 HM11 LDA sing 726 n n CM1 HM12 LDA sing 727 n n CM1 HM13 LDA sing 728 n n CM2 HM21 LDA sing 729 n n CM2 HM22 LDA sing 730 n n CM2 HM23 LDA sing 731 n n C1 C2 LDA sing 732 n n C1 H11 LDA sing 733 n n C1 H12 LDA sing 734 n n C2 C3 LDA sing 735 n n C2 H21 LDA sing 736 n n C2 H22 LDA sing 737 n n C3 C4 LDA sing 738 n n C3 H31 LDA sing 739 n n C3 H32 LDA sing 740 n n C4 C5 LDA sing 741 n n C4 H41 LDA sing 742 n n C4 H42 LDA sing 743 n n C5 C6 LDA sing 744 n n C5 H51 LDA sing 745 n n C5 H52 LDA sing 746 n n C6 C7 LDA sing 747 n n C6 H61 LDA sing 748 n n C6 H62 LDA sing 749 n n C7 C8 LDA sing 750 n n C7 H71 LDA sing 751 n n C7 H72 LDA sing 752 n n C8 C9 LDA sing 753 n n C8 H81 LDA sing 754 n n C8 H82 LDA sing 755 n n C9 C10 LDA sing 756 n n C9 H91 LDA sing 757 n n C9 H92 LDA sing 758 n n C10 C11 LDA sing 759 n n C10 H101 LDA sing 760 n n C10 H102 LDA sing 761 n n C11 C12 LDA sing 762 n n C11 H111 LDA sing 763 n n C11 H112 LDA sing 764 n n C12 H121 LDA sing 765 n n C12 H122 LDA sing 766 n n C12 H123 LDA sing 767 n n # _atom_sites.entry_id 3DTR _atom_sites.fract_transf_matrix[1][1] 0.007057 _atom_sites.fract_transf_matrix[1][2] 0.004074 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 502 502 BCL BCL . E 4 BCL L 1 501 501 BCL BCL . F 5 BPH L 1 503 503 BPH BPH . G 6 U10 L 1 504 504 U10 U10 . H 7 LDA L 1 709 709 LDA LDA . I 4 BCL M 1 501 501 BCL BCL . J 4 BCL M 1 502 502 BCL BCL . K 5 BPH M 1 503 503 BPH BPH . L 8 FE M 1 500 500 FE FE . M 6 U10 M 1 504 504 U10 U10 . N 9 SPN M 1 600 600 SPN SPN . O 10 CDL M 1 800 800 CDL CDL . P 7 LDA M 1 701 701 LDA LDA . Q 7 LDA M 1 704 704 LDA LDA . R 7 LDA H 1 703 703 LDA LDA . S 11 HOH L 1 1001 710 HOH HOH . S 11 HOH L 2 1002 711 HOH HOH . S 11 HOH L 3 1003 712 HOH HOH . S 11 HOH L 4 1004 713 HOH HOH . S 11 HOH L 5 1005 714 HOH HOH . S 11 HOH L 6 1006 715 HOH HOH . S 11 HOH L 7 1007 716 HOH HOH . S 11 HOH L 8 1008 717 HOH HOH . S 11 HOH L 9 1009 718 HOH HOH . S 11 HOH L 10 1010 719 HOH HOH . S 11 HOH L 11 1011 720 HOH HOH . S 11 HOH L 12 1012 721 HOH HOH . S 11 HOH L 13 1013 722 HOH HOH . S 11 HOH L 14 1014 723 HOH HOH . S 11 HOH L 15 1015 724 HOH HOH . S 11 HOH L 16 1016 725 HOH HOH . S 11 HOH L 17 1017 726 HOH HOH . S 11 HOH L 18 1018 727 HOH HOH . S 11 HOH L 19 1019 728 HOH HOH . S 11 HOH L 20 1020 729 HOH HOH . S 11 HOH L 21 1021 730 HOH HOH . S 11 HOH L 22 1022 731 HOH HOH . S 11 HOH L 23 1023 732 HOH HOH . S 11 HOH L 24 1024 733 HOH HOH . S 11 HOH L 25 1025 734 HOH HOH . S 11 HOH L 26 1026 735 HOH HOH . S 11 HOH L 27 1027 736 HOH HOH . S 11 HOH L 28 1028 737 HOH HOH . S 11 HOH L 29 1029 738 HOH HOH . S 11 HOH L 30 1030 739 HOH HOH . S 11 HOH L 31 1031 740 HOH HOH . S 11 HOH L 32 1032 741 HOH HOH . S 11 HOH L 33 1033 742 HOH HOH . S 11 HOH L 34 1034 743 HOH HOH . S 11 HOH L 35 1035 744 HOH HOH . S 11 HOH L 36 1036 745 HOH HOH . S 11 HOH L 37 1037 746 HOH HOH . S 11 HOH L 38 1038 747 HOH HOH . S 11 HOH L 39 1039 748 HOH HOH . S 11 HOH L 40 1040 749 HOH HOH . T 11 HOH M 1 1041 801 HOH HOH . T 11 HOH M 2 1042 802 HOH HOH . T 11 HOH M 3 1043 803 HOH HOH . T 11 HOH M 4 1044 804 HOH HOH . T 11 HOH M 5 1045 805 HOH HOH . T 11 HOH M 6 1046 806 HOH HOH . T 11 HOH M 7 1047 807 HOH HOH . T 11 HOH M 8 1048 808 HOH HOH . T 11 HOH M 9 1049 809 HOH HOH . T 11 HOH M 10 1050 810 HOH HOH . T 11 HOH M 11 1051 811 HOH HOH . T 11 HOH M 12 1052 812 HOH HOH . T 11 HOH M 13 1053 813 HOH HOH . T 11 HOH M 14 1054 814 HOH HOH . T 11 HOH M 15 1055 815 HOH HOH . T 11 HOH M 16 1056 816 HOH HOH . T 11 HOH M 17 1057 819 HOH HOH . T 11 HOH M 18 1058 820 HOH HOH . T 11 HOH M 19 1059 821 HOH HOH . T 11 HOH M 20 1060 822 HOH HOH . T 11 HOH M 21 1061 823 HOH HOH . T 11 HOH M 22 1062 824 HOH HOH . T 11 HOH M 23 1063 825 HOH HOH . T 11 HOH M 24 1064 826 HOH HOH . T 11 HOH M 25 1065 827 HOH HOH . T 11 HOH M 26 1066 828 HOH HOH . T 11 HOH M 27 1067 829 HOH HOH . T 11 HOH M 28 1068 830 HOH HOH . T 11 HOH M 29 1069 831 HOH HOH . T 11 HOH M 30 1070 832 HOH HOH . T 11 HOH M 31 1071 833 HOH HOH . T 11 HOH M 32 1072 834 HOH HOH . T 11 HOH M 33 1073 835 HOH HOH . T 11 HOH M 34 1074 836 HOH HOH . T 11 HOH M 35 1075 837 HOH HOH . T 11 HOH M 36 1076 838 HOH HOH . T 11 HOH M 37 1077 839 HOH HOH . T 11 HOH M 38 1078 840 HOH HOH . U 11 HOH H 1 1081 704 HOH HOH . U 11 HOH H 2 1082 705 HOH HOH . U 11 HOH H 3 1083 706 HOH HOH . U 11 HOH H 4 1084 707 HOH HOH . U 11 HOH H 5 1085 708 HOH HOH . U 11 HOH H 6 1086 709 HOH HOH . U 11 HOH H 7 1087 710 HOH HOH . U 11 HOH H 8 1088 711 HOH HOH . U 11 HOH H 9 1089 712 HOH HOH . U 11 HOH H 10 1090 713 HOH HOH . U 11 HOH H 11 1091 714 HOH HOH . U 11 HOH H 12 1092 715 HOH HOH . U 11 HOH H 13 1093 716 HOH HOH . U 11 HOH H 14 1094 717 HOH HOH . U 11 HOH H 15 1095 718 HOH HOH . U 11 HOH H 16 1096 719 HOH HOH . U 11 HOH H 17 1097 720 HOH HOH . U 11 HOH H 18 1098 721 HOH HOH . U 11 HOH H 19 1099 722 HOH HOH . U 11 HOH H 20 1100 723 HOH HOH . U 11 HOH H 21 1101 724 HOH HOH . U 11 HOH H 22 1102 725 HOH HOH . U 11 HOH H 23 1103 726 HOH HOH . U 11 HOH H 24 1104 727 HOH HOH . U 11 HOH H 25 1105 728 HOH HOH . U 11 HOH H 26 1106 729 HOH HOH . U 11 HOH H 27 1107 730 HOH HOH . U 11 HOH H 28 1108 731 HOH HOH . U 11 HOH H 29 1109 732 HOH HOH . U 11 HOH H 30 1110 733 HOH HOH . U 11 HOH H 31 1111 734 HOH HOH . U 11 HOH H 32 1112 735 HOH HOH . U 11 HOH H 33 1113 736 HOH HOH . U 11 HOH H 34 1114 737 HOH HOH . U 11 HOH H 35 1115 738 HOH HOH . U 11 HOH H 36 1116 739 HOH HOH . U 11 HOH H 37 1117 740 HOH HOH . U 11 HOH H 38 1118 741 HOH HOH . U 11 HOH H 39 1119 742 HOH HOH . U 11 HOH H 40 1120 743 HOH HOH . U 11 HOH H 41 1121 744 HOH HOH . U 11 HOH H 42 1122 745 HOH HOH . U 11 HOH H 43 1123 746 HOH HOH . U 11 HOH H 44 1124 747 HOH HOH . U 11 HOH H 45 1125 748 HOH HOH . U 11 HOH H 46 1126 749 HOH HOH . U 11 HOH H 47 1127 750 HOH HOH . U 11 HOH H 48 1128 751 HOH HOH . U 11 HOH H 49 1129 752 HOH HOH . U 11 HOH H 50 1130 753 HOH HOH . U 11 HOH H 51 1131 754 HOH HOH . U 11 HOH H 52 1132 755 HOH HOH . U 11 HOH H 53 1133 756 HOH HOH . U 11 HOH H 54 1134 757 HOH HOH . U 11 HOH H 55 1135 758 HOH HOH . U 11 HOH H 56 1136 759 HOH HOH . U 11 HOH H 57 1137 760 HOH HOH . U 11 HOH H 58 1138 761 HOH HOH . U 11 HOH H 59 1139 762 HOH HOH . U 11 HOH H 60 1140 763 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . R 7 16.036 83.886 5.828 1 70.89 ? N1 LDA 703 H 1 HETATM 2 O O1 LDA . . . R 7 14.979 83.71 5.239 1 72.16 ? O1 LDA 703 H 1 HETATM 3 C CM1 LDA . . . R 7 16.244 82.844 6.791 1 70.2 ? CM1 LDA 703 H 1 HETATM 4 C CM2 LDA . . . R 7 17.168 83.857 4.916 1 71 ? CM2 LDA 703 H 1 HETATM 5 C C1 LDA . . . R 7 16.028 85.155 6.529 1 70.72 ? C1 LDA 703 H 1 HETATM 6 C C2 LDA . . . R 7 17.004 85.417 7.643 1 69.51 ? C2 LDA 703 H 1 HETATM 7 C C3 LDA . . . R 7 16.444 86.371 8.646 1 69.15 ? C3 LDA 703 H 1 HETATM 8 C C4 LDA . . . R 7 17.562 86.862 9.549 1 68.81 ? C4 LDA 703 H 1 HETATM 9 C C5 LDA . . . R 7 17.006 87.755 10.633 1 70.87 ? C5 LDA 703 H 1 HETATM 10 C C6 LDA . . . R 7 18.091 88.18 11.6 1 71.46 ? C6 LDA 703 H 1 HETATM 11 C C7 LDA . . . R 7 17.495 88.992 12.749 1 73.22 ? C7 LDA 703 H 1 HETATM 12 C C8 LDA . . . R 7 18.547 89.36 13.781 1 73.49 ? C8 LDA 703 H 1 HETATM 13 C C9 LDA . . . R 7 18.177 88.817 15.152 1 75.66 ? C9 LDA 703 H 1 HETATM 14 C C10 LDA . . . R 7 17.919 89.932 16.158 1 75.45 ? C10 LDA 703 H 1 HETATM 15 C C11 LDA . . . R 7 18.518 89.597 17.519 1 77.08 ? C11 LDA 703 H 1 HETATM 16 C C12 LDA . . . R 7 18.604 90.834 18.381 1 78.24 ? C12 LDA 703 H 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #