data_3DU2
#
_model_server_result.job_id            -eM3q3PhV-26YQxjCMM1cQ 
_model_server_result.datetime_utc      '2025-08-30 12:53:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3du2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":703}' 
#
_entry.id    3DU2 
#
_exptl.entry_id    3DU2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DU2 
_cell.length_a            141.6 
_cell.length_b            141.6 
_cell.length_c            187.3 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DU2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 P N N 
? 7 Q N N 
? 7 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 E MG BCL . L BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 D MG BCL . L BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc5 B NE2 HIS 182 M HIS 182 1_555 I MG BCL . M BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 J MG BCL . M BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc8 B OE1 GLU 234 M GLU 234 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc9 B OE2 GLU 234 M GLU 234 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 L FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 722 n n 
N1 CM1 LDA sing 723 n n 
N1 CM2 LDA sing 724 n n 
N1 C1 LDA sing 725 n n 
CM1 HM11 LDA sing 726 n n 
CM1 HM12 LDA sing 727 n n 
CM1 HM13 LDA sing 728 n n 
CM2 HM21 LDA sing 729 n n 
CM2 HM22 LDA sing 730 n n 
CM2 HM23 LDA sing 731 n n 
C1 C2 LDA sing 732 n n 
C1 H11 LDA sing 733 n n 
C1 H12 LDA sing 734 n n 
C2 C3 LDA sing 735 n n 
C2 H21 LDA sing 736 n n 
C2 H22 LDA sing 737 n n 
C3 C4 LDA sing 738 n n 
C3 H31 LDA sing 739 n n 
C3 H32 LDA sing 740 n n 
C4 C5 LDA sing 741 n n 
C4 H41 LDA sing 742 n n 
C4 H42 LDA sing 743 n n 
C5 C6 LDA sing 744 n n 
C5 H51 LDA sing 745 n n 
C5 H52 LDA sing 746 n n 
C6 C7 LDA sing 747 n n 
C6 H61 LDA sing 748 n n 
C6 H62 LDA sing 749 n n 
C7 C8 LDA sing 750 n n 
C7 H71 LDA sing 751 n n 
C7 H72 LDA sing 752 n n 
C8 C9 LDA sing 753 n n 
C8 H81 LDA sing 754 n n 
C8 H82 LDA sing 755 n n 
C9 C10 LDA sing 756 n n 
C9 H91 LDA sing 757 n n 
C9 H92 LDA sing 758 n n 
C10 C11 LDA sing 759 n n 
C10 H101 LDA sing 760 n n 
C10 H102 LDA sing 761 n n 
C11 C12 LDA sing 762 n n 
C11 H111 LDA sing 763 n n 
C11 H112 LDA sing 764 n n 
C12 H121 LDA sing 765 n n 
C12 H122 LDA sing 766 n n 
C12 H123 LDA sing 767 n n 
#
_atom_sites.entry_id                     3DU2 
_atom_sites.fract_transf_matrix[1][1]    0.007062 
_atom_sites.fract_transf_matrix[1][2]    0.004077 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008155 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005339 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BCL L 1 502 502 BCL BCL . 
E 4 BCL L 1 501 501 BCL BCL . 
F 5 BPH L 1 503 503 BPH BPH . 
G 6 U10 L 1 504 504 U10 U10 . 
H 7 LDA L 1 709 709 LDA LDA . 
I 4 BCL M 1 501 501 BCL BCL . 
J 4 BCL M 1 502 502 BCL BCL . 
K 5 BPH M 1 503 503 BPH BPH . 
L 8 FE M 1 500 500 FE FE . 
M 6 U10 M 1 504 504 U10 U10 . 
N 9 SPN M 1 600 600 SPN SPN . 
O 10 CDL M 1 800 800 CDL CDL . 
P 7 LDA M 1 701 701 LDA LDA . 
Q 7 LDA M 1 704 704 LDA LDA . 
R 7 LDA H 1 703 703 LDA LDA . 
S 11 HOH L 1 1001 710 HOH HOH . 
S 11 HOH L 2 1002 711 HOH HOH . 
S 11 HOH L 3 1003 712 HOH HOH . 
S 11 HOH L 4 1004 713 HOH HOH . 
S 11 HOH L 5 1005 714 HOH HOH . 
S 11 HOH L 6 1006 715 HOH HOH . 
S 11 HOH L 7 1007 716 HOH HOH . 
S 11 HOH L 8 1008 717 HOH HOH . 
S 11 HOH L 9 1009 718 HOH HOH . 
S 11 HOH L 10 1010 719 HOH HOH . 
S 11 HOH L 11 1011 720 HOH HOH . 
S 11 HOH L 12 1012 721 HOH HOH . 
S 11 HOH L 13 1013 722 HOH HOH . 
S 11 HOH L 14 1014 723 HOH HOH . 
S 11 HOH L 15 1015 724 HOH HOH . 
S 11 HOH L 16 1016 725 HOH HOH . 
S 11 HOH L 17 1017 726 HOH HOH . 
S 11 HOH L 18 1018 727 HOH HOH . 
S 11 HOH L 19 1019 728 HOH HOH . 
S 11 HOH L 20 1020 729 HOH HOH . 
S 11 HOH L 21 1021 730 HOH HOH . 
S 11 HOH L 22 1022 731 HOH HOH . 
S 11 HOH L 23 1023 732 HOH HOH . 
S 11 HOH L 24 1024 733 HOH HOH . 
S 11 HOH L 25 1025 734 HOH HOH . 
S 11 HOH L 26 1026 735 HOH HOH . 
S 11 HOH L 27 1027 736 HOH HOH . 
S 11 HOH L 28 1028 737 HOH HOH . 
S 11 HOH L 29 1029 738 HOH HOH . 
S 11 HOH L 30 1030 739 HOH HOH . 
S 11 HOH L 31 1031 740 HOH HOH . 
S 11 HOH L 32 1032 741 HOH HOH . 
S 11 HOH L 33 1033 742 HOH HOH . 
S 11 HOH L 34 1034 743 HOH HOH . 
S 11 HOH L 35 1035 744 HOH HOH . 
S 11 HOH L 36 1036 745 HOH HOH . 
S 11 HOH L 37 1037 746 HOH HOH . 
S 11 HOH L 38 1038 747 HOH HOH . 
T 11 HOH M 1 1039 801 HOH HOH . 
T 11 HOH M 2 1040 802 HOH HOH . 
T 11 HOH M 3 1041 803 HOH HOH . 
T 11 HOH M 4 1042 804 HOH HOH . 
T 11 HOH M 5 1043 805 HOH HOH . 
T 11 HOH M 6 1044 806 HOH HOH . 
T 11 HOH M 7 1045 807 HOH HOH . 
T 11 HOH M 8 1046 808 HOH HOH . 
T 11 HOH M 9 1047 809 HOH HOH . 
T 11 HOH M 10 1048 810 HOH HOH . 
T 11 HOH M 11 1049 811 HOH HOH . 
T 11 HOH M 12 1050 812 HOH HOH . 
T 11 HOH M 13 1051 813 HOH HOH . 
T 11 HOH M 14 1052 814 HOH HOH . 
T 11 HOH M 15 1053 815 HOH HOH . 
T 11 HOH M 16 1054 816 HOH HOH . 
T 11 HOH M 17 1055 817 HOH HOH . 
T 11 HOH M 18 1056 818 HOH HOH . 
T 11 HOH M 19 1057 819 HOH HOH . 
T 11 HOH M 20 1058 820 HOH HOH . 
T 11 HOH M 21 1059 821 HOH HOH . 
T 11 HOH M 22 1060 822 HOH HOH . 
T 11 HOH M 23 1061 823 HOH HOH . 
T 11 HOH M 24 1062 824 HOH HOH . 
T 11 HOH M 25 1063 825 HOH HOH . 
T 11 HOH M 26 1064 826 HOH HOH . 
T 11 HOH M 27 1065 827 HOH HOH . 
T 11 HOH M 28 1066 828 HOH HOH . 
T 11 HOH M 29 1067 829 HOH HOH . 
T 11 HOH M 30 1068 830 HOH HOH . 
T 11 HOH M 31 1069 831 HOH HOH . 
T 11 HOH M 32 1070 832 HOH HOH . 
T 11 HOH M 33 1071 833 HOH HOH . 
T 11 HOH M 34 1072 834 HOH HOH . 
T 11 HOH M 35 1073 835 HOH HOH . 
T 11 HOH M 36 1074 836 HOH HOH . 
T 11 HOH M 37 1075 837 HOH HOH . 
T 11 HOH M 38 1076 838 HOH HOH . 
T 11 HOH M 39 1077 839 HOH HOH . 
T 11 HOH M 40 1078 840 HOH HOH . 
T 11 HOH M 41 1079 841 HOH HOH . 
T 11 HOH M 42 1080 842 HOH HOH . 
T 11 HOH M 43 1081 843 HOH HOH . 
T 11 HOH M 44 1082 844 HOH HOH . 
T 11 HOH M 45 1083 845 HOH HOH . 
T 11 HOH M 46 1084 846 HOH HOH . 
T 11 HOH M 47 1085 847 HOH HOH . 
U 11 HOH H 1 1086 704 HOH HOH . 
U 11 HOH H 2 1087 705 HOH HOH . 
U 11 HOH H 3 1088 706 HOH HOH . 
U 11 HOH H 4 1089 707 HOH HOH . 
U 11 HOH H 5 1090 708 HOH HOH . 
U 11 HOH H 6 1091 709 HOH HOH . 
U 11 HOH H 7 1092 710 HOH HOH . 
U 11 HOH H 8 1093 711 HOH HOH . 
U 11 HOH H 9 1094 712 HOH HOH . 
U 11 HOH H 10 1095 713 HOH HOH . 
U 11 HOH H 11 1096 714 HOH HOH . 
U 11 HOH H 12 1097 715 HOH HOH . 
U 11 HOH H 13 1098 716 HOH HOH . 
U 11 HOH H 14 1099 717 HOH HOH . 
U 11 HOH H 15 1100 718 HOH HOH . 
U 11 HOH H 16 1101 719 HOH HOH . 
U 11 HOH H 17 1102 720 HOH HOH . 
U 11 HOH H 18 1103 721 HOH HOH . 
U 11 HOH H 19 1104 722 HOH HOH . 
U 11 HOH H 20 1105 723 HOH HOH . 
U 11 HOH H 21 1106 724 HOH HOH . 
U 11 HOH H 22 1107 725 HOH HOH . 
U 11 HOH H 23 1108 726 HOH HOH . 
U 11 HOH H 24 1109 727 HOH HOH . 
U 11 HOH H 25 1110 728 HOH HOH . 
U 11 HOH H 26 1111 729 HOH HOH . 
U 11 HOH H 27 1112 730 HOH HOH . 
U 11 HOH H 28 1113 731 HOH HOH . 
U 11 HOH H 29 1114 732 HOH HOH . 
U 11 HOH H 30 1115 733 HOH HOH . 
U 11 HOH H 31 1116 734 HOH HOH . 
U 11 HOH H 32 1117 735 HOH HOH . 
U 11 HOH H 33 1118 736 HOH HOH . 
U 11 HOH H 34 1119 737 HOH HOH . 
U 11 HOH H 35 1120 738 HOH HOH . 
U 11 HOH H 36 1121 739 HOH HOH . 
U 11 HOH H 37 1122 740 HOH HOH . 
U 11 HOH H 38 1123 741 HOH HOH . 
U 11 HOH H 39 1124 742 HOH HOH . 
U 11 HOH H 40 1125 743 HOH HOH . 
U 11 HOH H 41 1126 744 HOH HOH . 
U 11 HOH H 42 1127 745 HOH HOH . 
U 11 HOH H 43 1128 746 HOH HOH . 
U 11 HOH H 44 1129 747 HOH HOH . 
U 11 HOH H 45 1130 748 HOH HOH . 
U 11 HOH H 46 1131 749 HOH HOH . 
U 11 HOH H 47 1132 750 HOH HOH . 
U 11 HOH H 48 1133 751 HOH HOH . 
U 11 HOH H 49 1134 752 HOH HOH . 
U 11 HOH H 50 1135 753 HOH HOH . 
U 11 HOH H 51 1136 754 HOH HOH . 
U 11 HOH H 52 1137 755 HOH HOH . 
U 11 HOH H 53 1138 756 HOH HOH . 
U 11 HOH H 54 1139 757 HOH HOH . 
U 11 HOH H 55 1140 758 HOH HOH . 
U 11 HOH H 56 1141 759 HOH HOH . 
U 11 HOH H 57 1142 760 HOH HOH . 
U 11 HOH H 58 1143 761 HOH HOH . 
U 11 HOH H 59 1144 762 HOH HOH . 
U 11 HOH H 60 1145 763 HOH HOH . 
U 11 HOH H 61 1146 764 HOH HOH . 
U 11 HOH H 62 1147 765 HOH HOH . 
U 11 HOH H 63 1148 766 HOH HOH . 
U 11 HOH H 64 1149 767 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . R 7 16.06 84.004 5.809 1 68.51 ? N1 LDA 703 H 1 
HETATM 2 O O1 LDA . . . R 7 15.005 83.829 5.217 1 69.32 ? O1 LDA 703 H 1 
HETATM 3 C CM1 LDA . . . R 7 16.264 82.961 6.773 1 67.46 ? CM1 LDA 703 H 1 
HETATM 4 C CM2 LDA . . . R 7 17.195 83.977 4.902 1 67.96 ? CM2 LDA 703 H 1 
HETATM 5 C C1 LDA . . . R 7 16.049 85.273 6.512 1 68.09 ? C1 LDA 703 H 1 
HETATM 6 C C2 LDA . . . R 7 17.02 85.534 7.631 1 66.65 ? C2 LDA 703 H 1 
HETATM 7 C C3 LDA . . . R 7 16.456 86.486 8.633 1 65.7 ? C3 LDA 703 H 1 
HETATM 8 C C4 LDA . . . R 7 17.571 86.976 9.54 1 65.73 ? C4 LDA 703 H 1 
HETATM 9 C C5 LDA . . . R 7 17.01 87.868 10.623 1 67.63 ? C5 LDA 703 H 1 
HETATM 10 C C6 LDA . . . R 7 18.091 88.293 11.595 1 68.88 ? C6 LDA 703 H 1 
HETATM 11 C C7 LDA . . . R 7 17.49 89.103 12.742 1 70.5 ? C7 LDA 703 H 1 
HETATM 12 C C8 LDA . . . R 7 18.538 89.47 13.779 1 70.33 ? C8 LDA 703 H 1 
HETATM 13 C C9 LDA . . . R 7 18.163 88.925 15.148 1 71.74 ? C9 LDA 703 H 1 
HETATM 14 C C10 LDA . . . R 7 17.901 90.038 16.154 1 71.41 ? C10 LDA 703 H 1 
HETATM 15 C C11 LDA . . . R 7 18.495 89.702 17.518 1 72.02 ? C11 LDA 703 H 1 
HETATM 16 C C12 LDA . . . R 7 18.577 90.938 18.381 1 73.45 ? C12 LDA 703 H 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#