data_3DU3 # _model_server_result.job_id JGzGYQVAPvO8tnf3TrsL-w _model_server_result.datetime_utc '2025-04-10 00:43:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3du3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":704}' # _entry.id 3DU3 # _exptl.entry_id 3DU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DU3 _cell.length_a 141.1 _cell.length_b 141.1 _cell.length_c 187.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 O N N ? 10 P N N ? 10 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 E MG BCL . L BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 D MG BCL . L BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 K FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 K FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc5 B NE2 HIS 182 M HIS 182 1_555 H MG BCL . M BCL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 I MG BCL . M BCL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 K FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc8 B OE1 GLU 234 M GLU 234 1_555 K FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc9 B OE2 GLU 234 M GLU 234 1_555 K FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 K FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 722 n n N1 CM1 LDA sing 723 n n N1 CM2 LDA sing 724 n n N1 C1 LDA sing 725 n n CM1 HM11 LDA sing 726 n n CM1 HM12 LDA sing 727 n n CM1 HM13 LDA sing 728 n n CM2 HM21 LDA sing 729 n n CM2 HM22 LDA sing 730 n n CM2 HM23 LDA sing 731 n n C1 C2 LDA sing 732 n n C1 H11 LDA sing 733 n n C1 H12 LDA sing 734 n n C2 C3 LDA sing 735 n n C2 H21 LDA sing 736 n n C2 H22 LDA sing 737 n n C3 C4 LDA sing 738 n n C3 H31 LDA sing 739 n n C3 H32 LDA sing 740 n n C4 C5 LDA sing 741 n n C4 H41 LDA sing 742 n n C4 H42 LDA sing 743 n n C5 C6 LDA sing 744 n n C5 H51 LDA sing 745 n n C5 H52 LDA sing 746 n n C6 C7 LDA sing 747 n n C6 H61 LDA sing 748 n n C6 H62 LDA sing 749 n n C7 C8 LDA sing 750 n n C7 H71 LDA sing 751 n n C7 H72 LDA sing 752 n n C8 C9 LDA sing 753 n n C8 H81 LDA sing 754 n n C8 H82 LDA sing 755 n n C9 C10 LDA sing 756 n n C9 H91 LDA sing 757 n n C9 H92 LDA sing 758 n n C10 C11 LDA sing 759 n n C10 H101 LDA sing 760 n n C10 H102 LDA sing 761 n n C11 C12 LDA sing 762 n n C11 H111 LDA sing 763 n n C11 H112 LDA sing 764 n n C12 H121 LDA sing 765 n n C12 H122 LDA sing 766 n n C12 H123 LDA sing 767 n n # _atom_sites.entry_id 3DU3 _atom_sites.fract_transf_matrix[1][1] 0.007087 _atom_sites.fract_transf_matrix[1][2] 0.004092 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 502 502 BCL BCL . E 4 BCL L 1 501 501 BCL BCL . F 5 BPH L 1 503 503 BPH BPH . G 6 U10 L 1 504 504 U10 U10 . H 4 BCL M 1 501 501 BCL BCL . I 4 BCL M 1 502 502 BCL BCL . J 5 BPH M 1 503 503 BPH BPH . K 7 FE M 1 500 500 FE FE . L 6 U10 M 1 504 504 U10 U10 . M 8 SPN M 1 600 600 SPN SPN . N 9 CDL M 1 800 800 CDL CDL . O 10 LDA M 1 701 701 LDA LDA . P 10 LDA M 1 704 704 LDA LDA . Q 10 LDA H 1 703 703 LDA LDA . R 11 HOH L 1 1001 1001 HOH HOH . R 11 HOH L 2 1002 1002 HOH HOH . R 11 HOH L 3 1003 1003 HOH HOH . R 11 HOH L 4 1004 1004 HOH HOH . R 11 HOH L 5 1005 1005 HOH HOH . R 11 HOH L 6 1006 1006 HOH HOH . R 11 HOH L 7 1007 1007 HOH HOH . R 11 HOH L 8 1008 1008 HOH HOH . R 11 HOH L 9 1009 1009 HOH HOH . R 11 HOH L 10 1010 1010 HOH HOH . R 11 HOH L 11 1011 1011 HOH HOH . R 11 HOH L 12 1012 1012 HOH HOH . R 11 HOH L 13 1013 1013 HOH HOH . R 11 HOH L 14 1014 1014 HOH HOH . R 11 HOH L 15 1015 1015 HOH HOH . R 11 HOH L 16 1016 1016 HOH HOH . R 11 HOH L 17 1017 1017 HOH HOH . R 11 HOH L 18 1018 1018 HOH HOH . R 11 HOH L 19 1019 1019 HOH HOH . R 11 HOH L 20 1020 1020 HOH HOH . R 11 HOH L 21 1021 1021 HOH HOH . R 11 HOH L 22 1022 1022 HOH HOH . R 11 HOH L 23 1023 1023 HOH HOH . R 11 HOH L 24 1024 1024 HOH HOH . R 11 HOH L 25 1025 1025 HOH HOH . R 11 HOH L 26 1026 1026 HOH HOH . R 11 HOH L 27 1027 1027 HOH HOH . R 11 HOH L 28 1028 1028 HOH HOH . R 11 HOH L 29 1029 1029 HOH HOH . R 11 HOH L 30 1030 1030 HOH HOH . R 11 HOH L 31 1031 1031 HOH HOH . R 11 HOH L 32 1032 1032 HOH HOH . R 11 HOH L 33 1033 1033 HOH HOH . R 11 HOH L 34 1034 1034 HOH HOH . R 11 HOH L 35 1035 1035 HOH HOH . R 11 HOH L 36 1036 1036 HOH HOH . R 11 HOH L 37 1037 1037 HOH HOH . R 11 HOH L 38 1038 1038 HOH HOH . R 11 HOH L 39 1039 1039 HOH HOH . R 11 HOH L 40 1040 1040 HOH HOH . R 11 HOH L 41 1041 1041 HOH HOH . S 11 HOH M 1 1042 1042 HOH HOH . S 11 HOH M 2 1043 1043 HOH HOH . S 11 HOH M 3 1044 1044 HOH HOH . S 11 HOH M 4 1045 1045 HOH HOH . S 11 HOH M 5 1046 1046 HOH HOH . S 11 HOH M 6 1047 1047 HOH HOH . S 11 HOH M 7 1048 1048 HOH HOH . S 11 HOH M 8 1049 1049 HOH HOH . S 11 HOH M 9 1050 1050 HOH HOH . S 11 HOH M 10 1051 1051 HOH HOH . S 11 HOH M 11 1052 1052 HOH HOH . S 11 HOH M 12 1053 1053 HOH HOH . S 11 HOH M 13 1054 1054 HOH HOH . S 11 HOH M 14 1055 1055 HOH HOH . S 11 HOH M 15 1056 1056 HOH HOH . S 11 HOH M 16 1057 1057 HOH HOH . S 11 HOH M 17 1058 1058 HOH HOH . S 11 HOH M 18 1059 1059 HOH HOH . S 11 HOH M 19 1060 1060 HOH HOH . S 11 HOH M 20 1061 1061 HOH HOH . S 11 HOH M 21 1062 1062 HOH HOH . S 11 HOH M 22 1063 1063 HOH HOH . S 11 HOH M 23 1064 1064 HOH HOH . S 11 HOH M 24 1065 1065 HOH HOH . S 11 HOH M 25 1066 1066 HOH HOH . S 11 HOH M 26 1067 1067 HOH HOH . S 11 HOH M 27 1068 1068 HOH HOH . S 11 HOH M 28 1069 1069 HOH HOH . S 11 HOH M 29 1070 1070 HOH HOH . S 11 HOH M 30 1071 1071 HOH HOH . S 11 HOH M 31 1072 1072 HOH HOH . S 11 HOH M 32 1073 1073 HOH HOH . S 11 HOH M 33 1074 1074 HOH HOH . S 11 HOH M 34 1075 1075 HOH HOH . S 11 HOH M 35 1076 1076 HOH HOH . S 11 HOH M 36 1077 1077 HOH HOH . S 11 HOH M 37 1078 1078 HOH HOH . S 11 HOH M 38 1079 1079 HOH HOH . S 11 HOH M 39 1080 1080 HOH HOH . S 11 HOH M 40 1081 1081 HOH HOH . S 11 HOH M 41 1082 1082 HOH HOH . S 11 HOH M 42 1083 1083 HOH HOH . S 11 HOH M 43 1084 1084 HOH HOH . S 11 HOH M 44 1085 1085 HOH HOH . S 11 HOH M 45 1086 1086 HOH HOH . S 11 HOH M 46 1087 1087 HOH HOH . S 11 HOH M 47 1088 1088 HOH HOH . S 11 HOH M 48 1089 1089 HOH HOH . S 11 HOH M 49 1090 1090 HOH HOH . S 11 HOH M 50 1091 1091 HOH HOH . S 11 HOH M 51 1092 1092 HOH HOH . S 11 HOH M 52 1093 1093 HOH HOH . S 11 HOH M 53 1094 1094 HOH HOH . S 11 HOH M 54 1095 1095 HOH HOH . S 11 HOH M 55 1096 1096 HOH HOH . T 11 HOH H 1 1097 1097 HOH HOH . T 11 HOH H 2 1098 1098 HOH HOH . T 11 HOH H 3 1099 1099 HOH HOH . T 11 HOH H 4 1100 1100 HOH HOH . T 11 HOH H 5 1101 1101 HOH HOH . T 11 HOH H 6 1102 1102 HOH HOH . T 11 HOH H 7 1103 1103 HOH HOH . T 11 HOH H 8 1104 1104 HOH HOH . T 11 HOH H 9 1105 1105 HOH HOH . T 11 HOH H 10 1106 1106 HOH HOH . T 11 HOH H 11 1107 1107 HOH HOH . T 11 HOH H 12 1108 1108 HOH HOH . T 11 HOH H 13 1109 1109 HOH HOH . T 11 HOH H 14 1110 1110 HOH HOH . T 11 HOH H 15 1111 1111 HOH HOH . T 11 HOH H 16 1112 1112 HOH HOH . T 11 HOH H 17 1113 1113 HOH HOH . T 11 HOH H 18 1114 1114 HOH HOH . T 11 HOH H 19 1115 1115 HOH HOH . T 11 HOH H 20 1116 1116 HOH HOH . T 11 HOH H 21 1117 1117 HOH HOH . T 11 HOH H 22 1118 1118 HOH HOH . T 11 HOH H 23 1119 1119 HOH HOH . T 11 HOH H 24 1120 1120 HOH HOH . T 11 HOH H 25 1121 1121 HOH HOH . T 11 HOH H 26 1122 1122 HOH HOH . T 11 HOH H 27 1123 1123 HOH HOH . T 11 HOH H 28 1124 1124 HOH HOH . T 11 HOH H 29 1125 1125 HOH HOH . T 11 HOH H 30 1126 1126 HOH HOH . T 11 HOH H 31 1127 1127 HOH HOH . T 11 HOH H 32 1128 1128 HOH HOH . T 11 HOH H 33 1129 1129 HOH HOH . T 11 HOH H 34 1130 1130 HOH HOH . T 11 HOH H 35 1131 1131 HOH HOH . T 11 HOH H 36 1132 1132 HOH HOH . T 11 HOH H 37 1133 1133 HOH HOH . T 11 HOH H 38 1134 1134 HOH HOH . T 11 HOH H 39 1135 1135 HOH HOH . T 11 HOH H 40 1136 1136 HOH HOH . T 11 HOH H 41 1137 1137 HOH HOH . T 11 HOH H 42 1138 1138 HOH HOH . T 11 HOH H 43 1139 1139 HOH HOH . T 11 HOH H 44 1140 1140 HOH HOH . T 11 HOH H 45 1141 1141 HOH HOH . T 11 HOH H 46 1142 1142 HOH HOH . T 11 HOH H 47 1143 1143 HOH HOH . T 11 HOH H 48 1144 1144 HOH HOH . T 11 HOH H 49 1145 1145 HOH HOH . T 11 HOH H 50 1146 1146 HOH HOH . T 11 HOH H 51 1147 1147 HOH HOH . T 11 HOH H 52 1148 1148 HOH HOH . T 11 HOH H 53 1149 1149 HOH HOH . T 11 HOH H 54 1150 1150 HOH HOH . T 11 HOH H 55 1151 1151 HOH HOH . T 11 HOH H 56 1152 1152 HOH HOH . T 11 HOH H 57 1153 1153 HOH HOH . T 11 HOH H 58 1154 1154 HOH HOH . T 11 HOH H 59 1155 1155 HOH HOH . T 11 HOH H 60 1156 1156 HOH HOH . T 11 HOH H 61 1157 1157 HOH HOH . T 11 HOH H 62 1158 1158 HOH HOH . T 11 HOH H 63 1159 1159 HOH HOH . T 11 HOH H 64 1160 1160 HOH HOH . T 11 HOH H 65 1161 1161 HOH HOH . T 11 HOH H 66 1162 1162 HOH HOH . T 11 HOH H 67 1163 1163 HOH HOH . T 11 HOH H 68 1164 1164 HOH HOH . T 11 HOH H 69 1165 1165 HOH HOH . T 11 HOH H 70 1166 1166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . P 10 12.819 86.253 7.809 1 109.03 ? N1 LDA 704 M 1 HETATM 2 O O1 LDA . . . P 10 13.064 85.029 7.703 1 110.09 ? O1 LDA 704 M 1 HETATM 3 C CM1 LDA . . . P 10 13.536 87.006 6.747 1 111.42 ? CM1 LDA 704 M 1 HETATM 4 C CM2 LDA . . . P 10 11.371 86.516 7.648 1 108.13 ? CM2 LDA 704 M 1 HETATM 5 C C1 LDA . . . P 10 13.245 86.768 9.16 1 105.58 ? C1 LDA 704 M 1 HETATM 6 C C2 LDA . . . P 10 13.024 86.64 10.678 1 99.99 ? C2 LDA 704 M 1 HETATM 7 C C3 LDA . . . P 10 13.481 87.894 11.442 1 98.29 ? C3 LDA 704 M 1 HETATM 8 C C4 LDA . . . P 10 12.887 87.965 12.862 1 96.27 ? C4 LDA 704 M 1 HETATM 9 C C5 LDA . . . P 10 13.472 89.129 13.683 1 95.18 ? C5 LDA 704 M 1 HETATM 10 C C6 LDA . . . P 10 12.531 89.597 14.803 1 95.44 ? C6 LDA 704 M 1 HETATM 11 C C7 LDA . . . P 10 12.728 91.081 15.096 1 92.94 ? C7 LDA 704 M 1 HETATM 12 C C8 LDA . . . P 10 14.195 91.441 15.327 1 90.57 ? C8 LDA 704 M 1 HETATM 13 C C9 LDA . . . P 10 14.346 92.383 16.527 1 87.55 ? C9 LDA 704 M 1 HETATM 14 C C10 LDA . . . P 10 15.697 93.076 16.523 1 88.02 ? C10 LDA 704 M 1 HETATM 15 C C11 LDA . . . P 10 15.772 94.167 17.603 1 85.34 ? C11 LDA 704 M 1 HETATM 16 C C12 LDA . . . P 10 17.195 94.741 17.723 1 81.33 ? C12 LDA 704 M 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #