data_3DU7
#
_model_server_result.job_id            wFp0thxPmUvxdkQgy42qsw 
_model_server_result.datetime_utc      '2024-11-27 13:15:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3du7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":600}' 
#
_entry.id    3DU7 
#
_exptl.entry_id    3DU7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DU7 
_cell.length_a            327.126 
_cell.length_b            327.126 
_cell.length_c            53.672 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DU7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 K N N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 231 n n 
PG O2G GTP sing 232 n n 
PG O3G GTP sing 233 n n 
PG O3B GTP sing 234 n n 
O2G HOG2 GTP sing 235 n n 
O3G HOG3 GTP sing 236 n n 
O3B PB GTP sing 237 n n 
PB O1B GTP doub 238 n n 
PB O2B GTP sing 239 n n 
PB O3A GTP sing 240 n n 
O2B HOB2 GTP sing 241 n n 
O3A PA GTP sing 242 n n 
PA O1A GTP doub 243 n n 
PA O2A GTP sing 244 n n 
PA O5' GTP sing 245 n n 
O2A HOA2 GTP sing 246 n n 
O5' C5' GTP sing 247 n n 
C5' C4' GTP sing 248 n n 
C5' H5' GTP sing 249 n n 
C5' "H5''" GTP sing 250 n n 
C4' O4' GTP sing 251 n n 
C4' C3' GTP sing 252 n n 
C4' H4' GTP sing 253 n n 
O4' C1' GTP sing 254 n n 
C3' O3' GTP sing 255 n n 
C3' C2' GTP sing 256 n n 
C3' H3' GTP sing 257 n n 
O3' HO3' GTP sing 258 n n 
C2' O2' GTP sing 259 n n 
C2' C1' GTP sing 260 n n 
C2' H2' GTP sing 261 n n 
O2' HO2' GTP sing 262 n n 
C1' N9 GTP sing 263 n n 
C1' H1' GTP sing 264 n n 
N9 C8 GTP sing 265 n y 
N9 C4 GTP sing 266 n y 
C8 N7 GTP doub 267 n y 
C8 H8 GTP sing 268 n n 
N7 C5 GTP sing 269 n y 
C5 C6 GTP sing 270 n n 
C5 C4 GTP doub 271 n y 
C6 O6 GTP doub 272 n n 
C6 N1 GTP sing 273 n n 
N1 C2 GTP sing 274 n n 
N1 HN1 GTP sing 275 n n 
C2 N2 GTP sing 276 n n 
C2 N3 GTP doub 277 n n 
N2 HN21 GTP sing 278 n n 
N2 HN22 GTP sing 279 n n 
N3 C4 GTP sing 280 n n 
#
_atom_sites.entry_id                     3DU7 
_atom_sites.fract_transf_matrix[1][1]    0.003057 
_atom_sites.fract_transf_matrix[1][2]    0.001765 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00353 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018632 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 MG A 1 500 500 MG MG . 
G 5 CN2 B 1 700 700 CN2 CN2 . 
H 6 HOS B 1 800 800 HOS HOS . 
I 4 MG C 1 501 501 MG MG . 
J 7 GTP D 1 600 600 GTP GTP . 
K 7 GTP D 1 601 601 GTP GTP . 
L 8 GDP D 1 602 602 GDP GDP . 
M 8 GDP D 1 603 603 GDP GDP . 
N 5 CN2 D 1 701 701 CN2 CN2 . 
O 6 HOS D 1 801 801 HOS HOS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . J 7 122.614 92.662 16.94 1 98.97 ? PG GTP 600 D 1 
HETATM 2 O O1G GTP . . . J 7 123.297 91.518 16.329 1 98.97 ? O1G GTP 600 D 1 
HETATM 3 O O2G GTP . . . J 7 122.482 92.454 18.439 1 98.97 ? O2G GTP 600 D 1 
HETATM 4 O O3G GTP . . . J 7 121.245 93.004 16.323 1 98.97 ? O3G GTP 600 D 1 
HETATM 5 O O3B GTP . . . J 7 123.598 93.875 16.77 1 98.97 ? O3B GTP 600 D 1 
HETATM 6 P PB GTP . . . J 7 122.893 95.292 16.68 1 98.97 ? PB GTP 600 D 1 
HETATM 7 O O1B GTP . . . J 7 123.538 96.211 17.629 1 98.97 ? O1B GTP 600 D 1 
HETATM 8 O O2B GTP . . . J 7 121.379 95.192 16.991 1 98.97 ? O2B GTP 600 D 1 
HETATM 9 O O3A GTP . . . J 7 123.317 95.702 15.157 1 98.97 ? O3A GTP 600 D 1 
HETATM 10 P PA GTP . . . J 7 124.717 95.446 14.35 1 98.97 ? PA GTP 600 D 1 
HETATM 11 O O1A GTP . . . J 7 124.723 94.153 13.614 1 98.97 ? O1A GTP 600 D 1 
HETATM 12 O O2A GTP . . . J 7 125.912 95.684 15.293 1 98.97 ? O2A GTP 600 D 1 
HETATM 13 O O5' GTP . . . J 7 124.776 96.618 13.255 1 98.97 ? O5' GTP 600 D 1 
HETATM 14 C C5' GTP . . . J 7 124.493 96.455 11.881 1 98.97 ? C5' GTP 600 D 1 
HETATM 15 C C4' GTP . . . J 7 125.292 97.52 11.12 1 98.97 ? C4' GTP 600 D 1 
HETATM 16 O O4' GTP . . . J 7 126.63 97.428 11.565 1 98.97 ? O4' GTP 600 D 1 
HETATM 17 C C3' GTP . . . J 7 125.313 97.296 9.607 1 98.97 ? C3' GTP 600 D 1 
HETATM 18 O O3' GTP . . . J 7 125.225 98.535 8.948 1 98.97 ? O3' GTP 600 D 1 
HETATM 19 C C2' GTP . . . J 7 126.646 96.612 9.289 1 98.97 ? C2' GTP 600 D 1 
HETATM 20 O O2' GTP . . . J 7 127.246 97.036 8.055 1 98.97 ? O2' GTP 600 D 1 
HETATM 21 C C1' GTP . . . J 7 127.485 96.845 10.568 1 98.97 ? C1' GTP 600 D 1 
HETATM 22 N N9 GTP . . . J 7 128.277 95.639 10.998 1 98.97 ? N9 GTP 600 D 1 
HETATM 23 C C8 GTP . . . J 7 127.883 94.417 11.492 1 98.97 ? C8 GTP 600 D 1 
HETATM 24 N N7 GTP . . . J 7 128.973 93.639 11.721 1 98.97 ? N7 GTP 600 D 1 
HETATM 25 C C5 GTP . . . J 7 130.066 94.353 11.382 1 98.97 ? C5 GTP 600 D 1 
HETATM 26 C C6 GTP . . . J 7 131.435 94.094 11.395 1 98.97 ? C6 GTP 600 D 1 
HETATM 27 O O6 GTP . . . J 7 131.885 93.017 11.771 1 98.97 ? O6 GTP 600 D 1 
HETATM 28 N N1 GTP . . . J 7 132.322 95.054 10.982 1 98.97 ? N1 GTP 600 D 1 
HETATM 29 C C2 GTP . . . J 7 131.84 96.262 10.561 1 98.97 ? C2 GTP 600 D 1 
HETATM 30 N N2 GTP . . . J 7 132.65 97.219 10.168 1 98.97 ? N2 GTP 600 D 1 
HETATM 31 N N3 GTP . . . J 7 130.507 96.51 10.534 1 98.97 ? N3 GTP 600 D 1 
HETATM 32 C C4 GTP . . . J 7 129.633 95.583 10.933 1 98.97 ? C4 GTP 600 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    55 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#