data_3DU7 # _model_server_result.job_id NH2q0Pb0_LiFGHEt66oPyQ _model_server_result.datetime_utc '2024-11-23 19:39:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3du7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 3DU7 # _exptl.entry_id 3DU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DU7 _cell.length_a 327.126 _cell.length_b 327.126 _cell.length_c 53.672 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 231 n n PG O2G GTP sing 232 n n PG O3G GTP sing 233 n n PG O3B GTP sing 234 n n O2G HOG2 GTP sing 235 n n O3G HOG3 GTP sing 236 n n O3B PB GTP sing 237 n n PB O1B GTP doub 238 n n PB O2B GTP sing 239 n n PB O3A GTP sing 240 n n O2B HOB2 GTP sing 241 n n O3A PA GTP sing 242 n n PA O1A GTP doub 243 n n PA O2A GTP sing 244 n n PA O5' GTP sing 245 n n O2A HOA2 GTP sing 246 n n O5' C5' GTP sing 247 n n C5' C4' GTP sing 248 n n C5' H5' GTP sing 249 n n C5' "H5''" GTP sing 250 n n C4' O4' GTP sing 251 n n C4' C3' GTP sing 252 n n C4' H4' GTP sing 253 n n O4' C1' GTP sing 254 n n C3' O3' GTP sing 255 n n C3' C2' GTP sing 256 n n C3' H3' GTP sing 257 n n O3' HO3' GTP sing 258 n n C2' O2' GTP sing 259 n n C2' C1' GTP sing 260 n n C2' H2' GTP sing 261 n n O2' HO2' GTP sing 262 n n C1' N9 GTP sing 263 n n C1' H1' GTP sing 264 n n N9 C8 GTP sing 265 n y N9 C4 GTP sing 266 n y C8 N7 GTP doub 267 n y C8 H8 GTP sing 268 n n N7 C5 GTP sing 269 n y C5 C6 GTP sing 270 n n C5 C4 GTP doub 271 n y C6 O6 GTP doub 272 n n C6 N1 GTP sing 273 n n N1 C2 GTP sing 274 n n N1 HN1 GTP sing 275 n n C2 N2 GTP sing 276 n n C2 N3 GTP doub 277 n n N2 HN21 GTP sing 278 n n N2 HN22 GTP sing 279 n n N3 C4 GTP sing 280 n n # _atom_sites.entry_id 3DU7 _atom_sites.fract_transf_matrix[1][1] 0.003057 _atom_sites.fract_transf_matrix[1][2] 0.001765 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 MG A 1 500 500 MG MG . G 5 CN2 B 1 700 700 CN2 CN2 . H 6 HOS B 1 800 800 HOS HOS . I 4 MG C 1 501 501 MG MG . J 7 GTP D 1 600 600 GTP GTP . K 7 GTP D 1 601 601 GTP GTP . L 8 GDP D 1 602 602 GDP GDP . M 8 GDP D 1 603 603 GDP GDP . N 5 CN2 D 1 701 701 CN2 CN2 . O 6 HOS D 1 801 801 HOS HOS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . K 7 49.822 53.14 0.082 1 98.97 ? PG GTP 601 D 1 HETATM 2 O O1G GTP . . . K 7 50.389 51.883 -0.378 1 98.97 ? O1G GTP 601 D 1 HETATM 3 O O2G GTP . . . K 7 49.04 52.964 1.385 1 98.97 ? O2G GTP 601 D 1 HETATM 4 O O3G GTP . . . K 7 48.905 53.777 -0.959 1 98.97 ? O3G GTP 601 D 1 HETATM 5 O O3B GTP . . . K 7 51.026 54.141 0.218 1 98.97 ? O3B GTP 601 D 1 HETATM 6 P PB GTP . . . K 7 50.519 55.613 -0.076 1 98.97 ? PB GTP 601 D 1 HETATM 7 O O1B GTP . . . K 7 51.504 56.57 0.451 1 98.97 ? O1B GTP 601 D 1 HETATM 8 O O2B GTP . . . K 7 49.125 55.758 0.555 1 98.97 ? O2B GTP 601 D 1 HETATM 9 O O3A GTP . . . K 7 50.417 55.725 -1.679 1 98.97 ? O3A GTP 601 D 1 HETATM 10 P PA GTP . . . K 7 51.738 55.516 -2.57 1 98.97 ? PA GTP 601 D 1 HETATM 11 O O1A GTP . . . K 7 51.607 54.275 -3.364 1 98.97 ? O1A GTP 601 D 1 HETATM 12 O O2A GTP . . . K 7 52.861 55.399 -1.548 1 98.97 ? O2A GTP 601 D 1 HETATM 13 O O5' GTP . . . K 7 52.042 56.769 -3.562 1 98.97 ? O5' GTP 601 D 1 HETATM 14 C C5' GTP . . . K 7 51.685 56.724 -4.937 1 98.97 ? C5' GTP 601 D 1 HETATM 15 C C4' GTP . . . K 7 52.6 57.464 -5.925 1 98.97 ? C4' GTP 601 D 1 HETATM 16 O O4' GTP . . . K 7 53.764 56.71 -6.047 1 98.97 ? O4' GTP 601 D 1 HETATM 17 C C3' GTP . . . K 7 52.015 57.487 -7.341 1 98.97 ? C3' GTP 601 D 1 HETATM 18 O O3' GTP . . . K 7 52.55 58.558 -8.076 1 98.97 ? O3' GTP 601 D 1 HETATM 19 C C2' GTP . . . K 7 52.48 56.239 -8.033 1 98.97 ? C2' GTP 601 D 1 HETATM 20 O O2' GTP . . . K 7 52.705 56.533 -9.393 1 98.97 ? O2' GTP 601 D 1 HETATM 21 C C1' GTP . . . K 7 53.783 56.035 -7.295 1 98.97 ? C1' GTP 601 D 1 HETATM 22 N N9 GTP . . . K 7 54.205 54.654 -7.067 1 98.97 ? N9 GTP 601 D 1 HETATM 23 C C8 GTP . . . K 7 53.572 53.582 -6.501 1 98.97 ? C8 GTP 601 D 1 HETATM 24 N N7 GTP . . . K 7 54.46 52.547 -6.526 1 98.97 ? N7 GTP 601 D 1 HETATM 25 C C5 GTP . . . K 7 55.647 52.949 -7.082 1 98.97 ? C5 GTP 601 D 1 HETATM 26 C C6 GTP . . . K 7 56.905 52.371 -7.375 1 98.97 ? C6 GTP 601 D 1 HETATM 27 O O6 GTP . . . K 7 57.159 51.208 -7.126 1 98.97 ? O6 GTP 601 D 1 HETATM 28 N N1 GTP . . . K 7 57.92 53.095 -7.968 1 98.97 ? N1 GTP 601 D 1 HETATM 29 C C2 GTP . . . K 7 57.703 54.416 -8.279 1 98.97 ? C2 GTP 601 D 1 HETATM 30 N N2 GTP . . . K 7 58.629 55.165 -8.85 1 98.97 ? N2 GTP 601 D 1 HETATM 31 N N3 GTP . . . K 7 56.487 54.982 -7.99 1 98.97 ? N3 GTP 601 D 1 HETATM 32 C C4 GTP . . . K 7 55.474 54.277 -7.413 1 98.97 ? C4 GTP 601 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #