data_3DU7
#
_model_server_result.job_id            RHr8EQ7m74NrbM7V64UAbA 
_model_server_result.datetime_utc      '2024-11-23 20:00:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3du7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":701}' 
#
_entry.id    3DU7 
#
_exptl.entry_id    3DU7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              431.502 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DU7 
_cell.length_a            327.126 
_cell.length_b            327.126 
_cell.length_c            53.672 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DU7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 N N N 
#
_chem_comp.formula           'C22 H25 N O6 S' 
_chem_comp.formula_weight    431.502 
_chem_comp.id                CN2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C12 CN2 doub 70 n n 
C12 C13 CN2 sing 71 n n 
C12 N1 CN2 sing 72 n n 
C13 S1 CN2 sing 73 n n 
C13 H131 CN2 sing 74 n n 
C13 H132 CN2 sing 75 n n 
S1 HS1 CN2 sing 76 n n 
N1 C11 CN2 sing 77 n n 
N1 HN1 CN2 sing 78 n n 
C11 C14 CN2 sing 79 n n 
C11 C10 CN2 sing 80 n n 
C11 H11 CN2 sing 81 n n 
C14 C15 CN2 doub 82 n y 
C14 C21 CN2 sing 83 n y 
C15 C16 CN2 sing 84 n y 
C15 H15 CN2 sing 85 n n 
C10 C9 CN2 sing 86 n n 
C10 H101 CN2 sing 87 n n 
C10 H102 CN2 sing 88 n n 
C9 C8 CN2 sing 89 n n 
C9 H91 CN2 sing 90 n n 
C9 H92 CN2 sing 91 n n 
C8 C7 CN2 sing 92 n y 
C8 C22 CN2 doub 93 n y 
C7 C5 CN2 doub 94 n y 
C7 H7 CN2 sing 95 n n 
C5 C3 CN2 sing 96 n y 
C5 O3 CN2 sing 97 n n 
C3 C1 CN2 doub 98 n y 
C3 O2 CN2 sing 99 n n 
C1 O1 CN2 sing 100 n n 
C1 C22 CN2 sing 101 n y 
O1 C2 CN2 sing 102 n n 
C2 H21 CN2 sing 103 n n 
C2 H22 CN2 sing 104 n n 
C2 H23 CN2 sing 105 n n 
O2 C4 CN2 sing 106 n n 
C4 H41 CN2 sing 107 n n 
C4 H42 CN2 sing 108 n n 
C4 H43 CN2 sing 109 n n 
O3 C6 CN2 sing 110 n n 
C6 H61 CN2 sing 111 n n 
C6 H62 CN2 sing 112 n n 
C6 H63 CN2 sing 113 n n 
C22 C21 CN2 sing 114 n y 
C21 C20 CN2 doub 115 n y 
C20 C19 CN2 sing 116 n y 
C20 H20 CN2 sing 117 n n 
C19 C17 CN2 doub 118 n y 
C19 H19 CN2 sing 119 n n 
C17 C16 CN2 sing 120 n y 
C17 O6 CN2 sing 121 n n 
C16 O5 CN2 doub 122 n n 
O6 C18 CN2 sing 123 n n 
C18 H181 CN2 sing 124 n n 
C18 H182 CN2 sing 125 n n 
C18 H183 CN2 sing 126 n n 
#
_atom_sites.entry_id                     3DU7 
_atom_sites.fract_transf_matrix[1][1]    0.003057 
_atom_sites.fract_transf_matrix[1][2]    0.001765 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00353 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018632 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 MG A 1 500 500 MG MG . 
G 5 CN2 B 1 700 700 CN2 CN2 . 
H 6 HOS B 1 800 800 HOS HOS . 
I 4 MG C 1 501 501 MG MG . 
J 7 GTP D 1 600 600 GTP GTP . 
K 7 GTP D 1 601 601 GTP GTP . 
L 8 GDP D 1 602 602 GDP GDP . 
M 8 GDP D 1 603 603 GDP GDP . 
N 5 CN2 D 1 701 701 CN2 CN2 . 
O 6 HOS D 1 801 801 HOS HOS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 CN2 . . . N 5 45.211 53.733 -7.117 1 98.97 ? O4 CN2 701 D 1 
HETATM 2 C C12 CN2 . . . N 5 44.927 53.178 -8.174 1 98.97 ? C12 CN2 701 D 1 
HETATM 3 C C13 CN2 . . . N 5 45.929 53.013 -9.279 1 98.97 ? C13 CN2 701 D 1 
HETATM 4 S S1 CN2 . . . N 5 44.959 53.765 -10.648 1 98.97 ? S1 CN2 701 D 1 
HETATM 5 N N1 CN2 . . . N 5 43.753 52.691 -8.59 1 98.97 ? N1 CN2 701 D 1 
HETATM 6 C C11 CN2 . . . N 5 42.439 52.654 -7.999 1 98.97 ? C11 CN2 701 D 1 
HETATM 7 C C14 CN2 . . . N 5 41.614 53.757 -8.565 1 98.97 ? C14 CN2 701 D 1 
HETATM 8 C C15 CN2 . . . N 5 42.208 54.945 -9.021 1 98.97 ? C15 CN2 701 D 1 
HETATM 9 C C10 CN2 . . . N 5 42.432 52.857 -6.499 1 98.97 ? C10 CN2 701 D 1 
HETATM 10 C C9 CN2 . . . N 5 41.138 52.273 -5.938 1 98.97 ? C9 CN2 701 D 1 
HETATM 11 C C8 CN2 . . . N 5 40.354 51.442 -6.933 1 98.97 ? C8 CN2 701 D 1 
HETATM 12 C C7 CN2 . . . N 5 40.015 50.13 -6.638 1 98.97 ? C7 CN2 701 D 1 
HETATM 13 C C5 CN2 . . . N 5 39.279 49.337 -7.535 1 98.97 ? C5 CN2 701 D 1 
HETATM 14 C C3 CN2 . . . N 5 38.852 49.86 -8.759 1 98.97 ? C3 CN2 701 D 1 
HETATM 15 C C1 CN2 . . . N 5 39.188 51.174 -9.07 1 98.97 ? C1 CN2 701 D 1 
HETATM 16 O O1 CN2 . . . N 5 38.768 51.62 -10.268 1 98.97 ? O1 CN2 701 D 1 
HETATM 17 C C2 CN2 . . . N 5 39.442 51.103 -11.413 1 98.97 ? C2 CN2 701 D 1 
HETATM 18 O O2 CN2 . . . N 5 38.107 49.098 -9.657 1 98.97 ? O2 CN2 701 D 1 
HETATM 19 C C4 CN2 . . . N 5 36.671 49.114 -9.63 1 98.97 ? C4 CN2 701 D 1 
HETATM 20 O O3 CN2 . . . N 5 38.99 48.033 -7.164 1 98.97 ? O3 CN2 701 D 1 
HETATM 21 C C6 CN2 . . . N 5 38.146 47.155 -7.923 1 98.97 ? C6 CN2 701 D 1 
HETATM 22 C C22 CN2 . . . N 5 39.907 52.013 -8.219 1 98.97 ? C22 CN2 701 D 1 
HETATM 23 C C21 CN2 . . . N 5 40.313 53.437 -8.538 1 98.97 ? C21 CN2 701 D 1 
HETATM 24 C C20 CN2 . . . N 5 39.629 54.425 -8.821 1 98.97 ? C20 CN2 701 D 1 
HETATM 25 C C19 CN2 . . . N 5 39.595 55.504 -9.344 1 98.97 ? C19 CN2 701 D 1 
HETATM 26 C C17 CN2 . . . N 5 40.23 56.455 -9.856 1 98.97 ? C17 CN2 701 D 1 
HETATM 27 C C16 CN2 . . . N 5 41.687 56.243 -9.662 1 98.97 ? C16 CN2 701 D 1 
HETATM 28 O O5 CN2 . . . N 5 42.466 57.127 -10.057 1 98.97 ? O5 CN2 701 D 1 
HETATM 29 O O6 CN2 . . . N 5 39.629 57.541 -10.628 1 98.97 ? O6 CN2 701 D 1 
HETATM 30 C C18 CN2 . . . N 5 38.833 57.172 -11.767 1 98.97 ? C18 CN2 701 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#