data_3DU8
#
_model_server_result.job_id            eNcUWuy58S3xEgu2j-NG9g 
_model_server_result.datetime_utc      '2025-07-01 15:42:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3du8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":553}' 
#
_entry.id    3DU8 
#
_exptl.entry_id    3DU8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              275.282 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (7S)-2-(2-aminopyrimidin-4-yl)-7-(2-fluoroethyl)-1,5,6,7-tetrahydro-4H-pyrrolo[3,2-c]pyridin-4-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DU8 
_cell.length_a            82.599 
_cell.length_b            85.81 
_cell.length_c            178.043 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DU8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H14 F N5 O' 
_chem_comp.formula_weight    275.282 
_chem_comp.id                553 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (7S)-2-(2-aminopyrimidin-4-yl)-7-(2-fluoroethyl)-1,5,6,7-tetrahydro-4H-pyrrolo[3,2-c]pyridin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 O19 553 doub 1 n n 
N14 C15 553 sing 2 n n 
C15 C10 553 sing 3 n n 
C13 N14 553 sing 4 n n 
N14 HN14 553 sing 5 n n 
C13 C12 553 sing 6 n n 
C13 H13 553 sing 7 n n 
C13 H13A 553 sing 8 n n 
C12 C16 553 sing 9 n n 
C12 C11 553 sing 10 n n 
C12 H12 553 sing 11 n n 
C17 C16 553 sing 12 n n 
C16 H16 553 sing 13 n n 
C16 H16A 553 sing 14 n n 
F18 C17 553 sing 15 n n 
C17 H17 553 sing 16 n n 
C17 H17A 553 sing 17 n n 
C11 C10 553 doub 18 n y 
C11 N8 553 sing 19 n y 
N8 C7 553 sing 20 n y 
C10 C9 553 sing 21 n y 
C9 C7 553 doub 22 n y 
C9 H9 553 sing 23 n n 
C7 C5 553 sing 24 n y 
N4 C5 553 doub 25 n y 
C5 C6 553 sing 26 n y 
C6 C1 553 doub 27 n y 
C6 H6 553 sing 28 n n 
N2 C1 553 sing 29 n y 
C1 H1 553 sing 30 n n 
N4 C3 553 sing 31 n y 
N20 C3 553 sing 32 n n 
C3 N2 553 doub 33 n y 
N20 HN20 553 sing 34 n n 
N20 HN2A 553 sing 35 n n 
N8 HN8 553 sing 36 n n 
#
_atom_sites.entry_id                     3DU8 
_atom_sites.fract_transf_matrix[1][1]    0.012107 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011654 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005617 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 553 A 1 553 553 553 553 . 
D 2 553 B 1 553 553 553 553 . 
E 3 HOH A 1 554 1 HOH HOH . 
E 3 HOH A 2 555 2 HOH HOH . 
E 3 HOH A 3 556 4 HOH HOH . 
E 3 HOH A 4 557 6 HOH HOH . 
E 3 HOH A 5 558 7 HOH HOH . 
E 3 HOH A 6 559 8 HOH HOH . 
E 3 HOH A 7 560 10 HOH HOH . 
E 3 HOH A 8 561 12 HOH HOH . 
E 3 HOH A 9 562 13 HOH HOH . 
E 3 HOH A 10 563 15 HOH HOH . 
E 3 HOH A 11 564 17 HOH HOH . 
E 3 HOH A 12 565 20 HOH HOH . 
E 3 HOH A 13 566 24 HOH HOH . 
E 3 HOH A 14 567 27 HOH HOH . 
E 3 HOH A 15 568 28 HOH HOH . 
E 3 HOH A 16 569 30 HOH HOH . 
E 3 HOH A 17 570 31 HOH HOH . 
E 3 HOH A 18 571 34 HOH HOH . 
E 3 HOH A 19 572 35 HOH HOH . 
E 3 HOH A 20 573 36 HOH HOH . 
E 3 HOH A 21 574 37 HOH HOH . 
E 3 HOH A 22 575 39 HOH HOH . 
E 3 HOH A 23 576 40 HOH HOH . 
E 3 HOH A 24 577 41 HOH HOH . 
E 3 HOH A 25 578 45 HOH HOH . 
E 3 HOH A 26 579 48 HOH HOH . 
E 3 HOH A 27 580 49 HOH HOH . 
E 3 HOH A 28 581 50 HOH HOH . 
E 3 HOH A 29 582 51 HOH HOH . 
E 3 HOH A 30 583 53 HOH HOH . 
E 3 HOH A 31 584 54 HOH HOH . 
E 3 HOH A 32 585 55 HOH HOH . 
E 3 HOH A 33 586 60 HOH HOH . 
E 3 HOH A 34 587 61 HOH HOH . 
E 3 HOH A 35 588 62 HOH HOH . 
E 3 HOH A 36 589 63 HOH HOH . 
E 3 HOH A 37 590 64 HOH HOH . 
E 3 HOH A 38 591 67 HOH HOH . 
E 3 HOH A 39 592 70 HOH HOH . 
E 3 HOH A 40 593 73 HOH HOH . 
E 3 HOH A 41 594 74 HOH HOH . 
E 3 HOH A 42 595 76 HOH HOH . 
E 3 HOH A 43 596 78 HOH HOH . 
E 3 HOH A 44 597 79 HOH HOH . 
E 3 HOH A 45 598 81 HOH HOH . 
E 3 HOH A 46 599 84 HOH HOH . 
E 3 HOH A 47 600 85 HOH HOH . 
E 3 HOH A 48 601 86 HOH HOH . 
E 3 HOH A 49 602 89 HOH HOH . 
E 3 HOH A 50 603 90 HOH HOH . 
E 3 HOH A 51 604 91 HOH HOH . 
E 3 HOH A 52 605 93 HOH HOH . 
E 3 HOH A 53 606 94 HOH HOH . 
E 3 HOH A 54 607 95 HOH HOH . 
E 3 HOH A 55 608 97 HOH HOH . 
E 3 HOH A 56 609 100 HOH HOH . 
E 3 HOH A 57 610 101 HOH HOH . 
E 3 HOH A 58 611 102 HOH HOH . 
E 3 HOH A 59 612 104 HOH HOH . 
E 3 HOH A 60 613 107 HOH HOH . 
E 3 HOH A 61 614 108 HOH HOH . 
E 3 HOH A 62 615 112 HOH HOH . 
E 3 HOH A 63 616 113 HOH HOH . 
E 3 HOH A 64 617 114 HOH HOH . 
E 3 HOH A 65 618 116 HOH HOH . 
E 3 HOH A 66 619 117 HOH HOH . 
E 3 HOH A 67 620 120 HOH HOH . 
E 3 HOH A 68 621 121 HOH HOH . 
E 3 HOH A 69 622 122 HOH HOH . 
E 3 HOH A 70 623 123 HOH HOH . 
E 3 HOH A 71 624 124 HOH HOH . 
E 3 HOH A 72 625 128 HOH HOH . 
E 3 HOH A 73 626 129 HOH HOH . 
E 3 HOH A 74 627 130 HOH HOH . 
E 3 HOH A 75 628 131 HOH HOH . 
E 3 HOH A 76 629 136 HOH HOH . 
E 3 HOH A 77 630 137 HOH HOH . 
E 3 HOH A 78 631 140 HOH HOH . 
E 3 HOH A 79 632 143 HOH HOH . 
E 3 HOH A 80 633 144 HOH HOH . 
E 3 HOH A 81 634 147 HOH HOH . 
E 3 HOH A 82 635 148 HOH HOH . 
E 3 HOH A 83 636 150 HOH HOH . 
E 3 HOH A 84 637 152 HOH HOH . 
E 3 HOH A 85 638 154 HOH HOH . 
E 3 HOH A 86 639 156 HOH HOH . 
E 3 HOH A 87 640 157 HOH HOH . 
E 3 HOH A 88 641 160 HOH HOH . 
E 3 HOH A 89 642 161 HOH HOH . 
E 3 HOH A 90 643 162 HOH HOH . 
E 3 HOH A 91 644 168 HOH HOH . 
E 3 HOH A 92 645 169 HOH HOH . 
E 3 HOH A 93 646 170 HOH HOH . 
E 3 HOH A 94 647 171 HOH HOH . 
E 3 HOH A 95 648 173 HOH HOH . 
E 3 HOH A 96 649 177 HOH HOH . 
E 3 HOH A 97 650 182 HOH HOH . 
E 3 HOH A 98 651 184 HOH HOH . 
E 3 HOH A 99 652 187 HOH HOH . 
E 3 HOH A 100 653 188 HOH HOH . 
E 3 HOH A 101 654 190 HOH HOH . 
E 3 HOH A 102 655 193 HOH HOH . 
E 3 HOH A 103 656 194 HOH HOH . 
E 3 HOH A 104 657 195 HOH HOH . 
E 3 HOH A 105 658 197 HOH HOH . 
E 3 HOH A 106 659 198 HOH HOH . 
E 3 HOH A 107 660 199 HOH HOH . 
E 3 HOH A 108 661 200 HOH HOH . 
E 3 HOH A 109 662 202 HOH HOH . 
E 3 HOH A 110 663 208 HOH HOH . 
E 3 HOH A 111 664 212 HOH HOH . 
E 3 HOH A 112 665 213 HOH HOH . 
E 3 HOH A 113 666 214 HOH HOH . 
F 3 HOH B 1 554 3 HOH HOH . 
F 3 HOH B 2 555 5 HOH HOH . 
F 3 HOH B 3 556 9 HOH HOH . 
F 3 HOH B 4 557 11 HOH HOH . 
F 3 HOH B 5 558 14 HOH HOH . 
F 3 HOH B 6 559 16 HOH HOH . 
F 3 HOH B 7 560 18 HOH HOH . 
F 3 HOH B 8 561 19 HOH HOH . 
F 3 HOH B 9 562 21 HOH HOH . 
F 3 HOH B 10 563 22 HOH HOH . 
F 3 HOH B 11 564 23 HOH HOH . 
F 3 HOH B 12 565 25 HOH HOH . 
F 3 HOH B 13 566 26 HOH HOH . 
F 3 HOH B 14 567 29 HOH HOH . 
F 3 HOH B 15 568 32 HOH HOH . 
F 3 HOH B 16 569 33 HOH HOH . 
F 3 HOH B 17 570 38 HOH HOH . 
F 3 HOH B 18 571 42 HOH HOH . 
F 3 HOH B 19 572 43 HOH HOH . 
F 3 HOH B 20 573 44 HOH HOH . 
F 3 HOH B 21 574 46 HOH HOH . 
F 3 HOH B 22 575 47 HOH HOH . 
F 3 HOH B 23 576 52 HOH HOH . 
F 3 HOH B 24 577 56 HOH HOH . 
F 3 HOH B 25 578 57 HOH HOH . 
F 3 HOH B 26 579 58 HOH HOH . 
F 3 HOH B 27 580 59 HOH HOH . 
F 3 HOH B 28 581 65 HOH HOH . 
F 3 HOH B 29 582 66 HOH HOH . 
F 3 HOH B 30 583 68 HOH HOH . 
F 3 HOH B 31 584 69 HOH HOH . 
F 3 HOH B 32 585 71 HOH HOH . 
F 3 HOH B 33 586 72 HOH HOH . 
F 3 HOH B 34 587 75 HOH HOH . 
F 3 HOH B 35 588 77 HOH HOH . 
F 3 HOH B 36 589 80 HOH HOH . 
F 3 HOH B 37 590 82 HOH HOH . 
F 3 HOH B 38 591 83 HOH HOH . 
F 3 HOH B 39 592 87 HOH HOH . 
F 3 HOH B 40 593 88 HOH HOH . 
F 3 HOH B 41 594 92 HOH HOH . 
F 3 HOH B 42 595 96 HOH HOH . 
F 3 HOH B 43 596 98 HOH HOH . 
F 3 HOH B 44 597 99 HOH HOH . 
F 3 HOH B 45 598 103 HOH HOH . 
F 3 HOH B 46 599 105 HOH HOH . 
F 3 HOH B 47 600 106 HOH HOH . 
F 3 HOH B 48 601 109 HOH HOH . 
F 3 HOH B 49 602 110 HOH HOH . 
F 3 HOH B 50 603 111 HOH HOH . 
F 3 HOH B 51 604 115 HOH HOH . 
F 3 HOH B 52 605 118 HOH HOH . 
F 3 HOH B 53 606 119 HOH HOH . 
F 3 HOH B 54 607 125 HOH HOH . 
F 3 HOH B 55 608 126 HOH HOH . 
F 3 HOH B 56 609 127 HOH HOH . 
F 3 HOH B 57 610 132 HOH HOH . 
F 3 HOH B 58 611 133 HOH HOH . 
F 3 HOH B 59 612 134 HOH HOH . 
F 3 HOH B 60 613 135 HOH HOH . 
F 3 HOH B 61 614 138 HOH HOH . 
F 3 HOH B 62 615 139 HOH HOH . 
F 3 HOH B 63 616 141 HOH HOH . 
F 3 HOH B 64 617 142 HOH HOH . 
F 3 HOH B 65 618 145 HOH HOH . 
F 3 HOH B 66 619 146 HOH HOH . 
F 3 HOH B 67 620 149 HOH HOH . 
F 3 HOH B 68 621 151 HOH HOH . 
F 3 HOH B 69 622 153 HOH HOH . 
F 3 HOH B 70 623 155 HOH HOH . 
F 3 HOH B 71 624 158 HOH HOH . 
F 3 HOH B 72 625 159 HOH HOH . 
F 3 HOH B 73 626 163 HOH HOH . 
F 3 HOH B 74 627 164 HOH HOH . 
F 3 HOH B 75 628 165 HOH HOH . 
F 3 HOH B 76 629 166 HOH HOH . 
F 3 HOH B 77 630 167 HOH HOH . 
F 3 HOH B 78 631 172 HOH HOH . 
F 3 HOH B 79 632 174 HOH HOH . 
F 3 HOH B 80 633 175 HOH HOH . 
F 3 HOH B 81 634 176 HOH HOH . 
F 3 HOH B 82 635 178 HOH HOH . 
F 3 HOH B 83 636 179 HOH HOH . 
F 3 HOH B 84 637 180 HOH HOH . 
F 3 HOH B 85 638 181 HOH HOH . 
F 3 HOH B 86 639 183 HOH HOH . 
F 3 HOH B 87 640 185 HOH HOH . 
F 3 HOH B 88 641 186 HOH HOH . 
F 3 HOH B 89 642 189 HOH HOH . 
F 3 HOH B 90 643 191 HOH HOH . 
F 3 HOH B 91 644 192 HOH HOH . 
F 3 HOH B 92 645 196 HOH HOH . 
F 3 HOH B 93 646 201 HOH HOH . 
F 3 HOH B 94 647 203 HOH HOH . 
F 3 HOH B 95 648 204 HOH HOH . 
F 3 HOH B 96 649 205 HOH HOH . 
F 3 HOH B 97 650 206 HOH HOH . 
F 3 HOH B 98 651 207 HOH HOH . 
F 3 HOH B 99 652 209 HOH HOH . 
F 3 HOH B 100 653 210 HOH HOH . 
F 3 HOH B 101 654 211 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O19 553 . . . C 2 24.299 -14.592 -9.954 1 40.97 ? O19 553 553 A 1 
HETATM 2 C C15 553 . . . C 2 23.256 -14.904 -10.535 1 42.29 ? C15 553 553 A 1 
HETATM 3 N N14 553 . . . C 2 22.883 -14.408 -11.728 1 43.1 ? N14 553 553 A 1 
HETATM 4 C C13 553 . . . C 2 21.635 -14.738 -12.44 1 45.23 ? C13 553 553 A 1 
HETATM 5 C C12 553 . . . C 2 20.443 -15.165 -11.556 1 46.3 ? C12 553 553 A 1 
HETATM 6 C C16 553 . . . C 2 19.772 -13.964 -10.868 1 48.87 ? C16 553 553 A 1 
HETATM 7 C C17 553 . . . C 2 19.675 -12.73 -11.773 1 57.17 ? C17 553 553 A 1 
HETATM 8 F F18 553 . . . C 2 18.655 -12.884 -12.698 1 60.93 ? F18 553 553 A 1 
HETATM 9 C C11 553 . . . C 2 20.957 -15.975 -10.43 1 43.38 ? C11 553 553 A 1 
HETATM 10 N N8 553 . . . C 2 20.314 -16.88 -9.686 1 40.86 ? N8 553 553 A 1 
HETATM 11 C C10 553 . . . C 2 22.324 -15.858 -9.89 1 41.8 ? C10 553 553 A 1 
HETATM 12 C C9 553 . . . C 2 22.455 -16.735 -8.825 1 42.78 ? C9 553 553 A 1 
HETATM 13 C C7 553 . . . C 2 21.195 -17.335 -8.757 1 40.43 ? C7 553 553 A 1 
HETATM 14 C C5 553 . . . C 2 20.608 -18.308 -7.807 1 40.77 ? C5 553 553 A 1 
HETATM 15 C C6 553 . . . C 2 21.265 -18.559 -6.59 1 36.73 ? C6 553 553 A 1 
HETATM 16 C C1 553 . . . C 2 20.658 -19.455 -5.71 1 33.87 ? C1 553 553 A 1 
HETATM 17 N N4 553 . . . C 2 19.379 -18.869 -8.054 1 39.44 ? N4 553 553 A 1 
HETATM 18 C C3 553 . . . C 2 18.819 -19.734 -7.169 1 38.31 ? C3 553 553 A 1 
HETATM 19 N N2 553 . . . C 2 19.458 -20.011 -5.999 1 35.12 ? N2 553 553 A 1 
HETATM 20 N N20 553 . . . C 2 17.632 -20.32 -7.486 1 37.19 ? N20 553 553 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           418 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#