data_3DUU # _model_server_result.job_id iPNDGwSUJl4gkrNSv6-LjQ _model_server_result.datetime_utc '2024-11-13 03:38:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3duu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":115}' # _entry.id 3DUU # _exptl.entry_id 3DUU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DUU _cell.length_a 71.6 _cell.length_b 71.76 _cell.length_c 86.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DUU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,H,I,J,K,N,O 1 1 A,B,E,F,G,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 94 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 C SG CYS 23 C CYS 23 1_555 C SG CYS 94 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 98 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 H MG MG . C MG 111 1_555 N O HOH . C HOH 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 246 n n O1 HO1 PG4 sing 247 n n C1 C2 PG4 sing 248 n n C1 H11 PG4 sing 249 n n C1 H12 PG4 sing 250 n n C2 O2 PG4 sing 251 n n C2 H21 PG4 sing 252 n n C2 H22 PG4 sing 253 n n O2 C3 PG4 sing 254 n n C3 C4 PG4 sing 255 n n C3 H31 PG4 sing 256 n n C3 H32 PG4 sing 257 n n C4 O3 PG4 sing 258 n n C4 H41 PG4 sing 259 n n C4 H42 PG4 sing 260 n n O3 C5 PG4 sing 261 n n C5 C6 PG4 sing 262 n n C5 H51 PG4 sing 263 n n C5 H52 PG4 sing 264 n n C6 O4 PG4 sing 265 n n C6 H61 PG4 sing 266 n n C6 H62 PG4 sing 267 n n O4 C7 PG4 sing 268 n n C7 C8 PG4 sing 269 n n C7 H71 PG4 sing 270 n n C7 H72 PG4 sing 271 n n C8 O5 PG4 sing 272 n n C8 H81 PG4 sing 273 n n C8 H82 PG4 sing 274 n n O5 HO5 PG4 sing 275 n n # _atom_sites.entry_id 3DUU _atom_sites.fract_transf_matrix[1][1] 0.013966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 112 112 MG MG . F 4 KDO B 1 114 107 KDO KDO . G 5 PG4 B 1 115 109 PG4 PG4 . H 3 MG C 1 111 111 MG MG . I 3 MG C 1 113 113 MG MG . J 4 KDO D 1 114 108 KDO KDO . K 5 PG4 D 1 115 110 PG4 PG4 . L 6 HOH A 1 113 3 HOH HOH . L 6 HOH A 2 114 4 HOH HOH . L 6 HOH A 3 115 5 HOH HOH . L 6 HOH A 4 116 9 HOH HOH . L 6 HOH A 5 117 13 HOH HOH . L 6 HOH A 6 118 17 HOH HOH . L 6 HOH A 7 119 20 HOH HOH . L 6 HOH A 8 120 22 HOH HOH . L 6 HOH A 9 121 24 HOH HOH . L 6 HOH A 10 122 31 HOH HOH . L 6 HOH A 11 123 37 HOH HOH . L 6 HOH A 12 124 39 HOH HOH . L 6 HOH A 13 125 40 HOH HOH . L 6 HOH A 14 126 44 HOH HOH . L 6 HOH A 15 127 46 HOH HOH . L 6 HOH A 16 128 52 HOH HOH . L 6 HOH A 17 129 53 HOH HOH . L 6 HOH A 18 130 56 HOH HOH . L 6 HOH A 19 131 58 HOH HOH . L 6 HOH A 20 132 64 HOH HOH . L 6 HOH A 21 133 65 HOH HOH . L 6 HOH A 22 134 69 HOH HOH . L 6 HOH A 23 135 77 HOH HOH . L 6 HOH A 24 136 79 HOH HOH . L 6 HOH A 25 137 82 HOH HOH . L 6 HOH A 26 138 85 HOH HOH . L 6 HOH A 27 139 90 HOH HOH . L 6 HOH A 28 140 96 HOH HOH . L 6 HOH A 29 141 106 HOH HOH . L 6 HOH A 30 142 114 HOH HOH . L 6 HOH A 31 143 115 HOH HOH . L 6 HOH A 32 144 121 HOH HOH . L 6 HOH A 33 145 124 HOH HOH . L 6 HOH A 34 146 126 HOH HOH . L 6 HOH A 35 147 142 HOH HOH . L 6 HOH A 36 148 144 HOH HOH . L 6 HOH A 37 149 146 HOH HOH . L 6 HOH A 38 150 147 HOH HOH . L 6 HOH A 39 151 150 HOH HOH . L 6 HOH A 40 152 152 HOH HOH . L 6 HOH A 41 153 153 HOH HOH . L 6 HOH A 42 154 154 HOH HOH . L 6 HOH A 43 155 155 HOH HOH . L 6 HOH A 44 156 158 HOH HOH . L 6 HOH A 45 157 163 HOH HOH . L 6 HOH A 46 158 169 HOH HOH . L 6 HOH A 47 159 170 HOH HOH . L 6 HOH A 48 160 178 HOH HOH . L 6 HOH A 49 161 189 HOH HOH . L 6 HOH A 50 162 190 HOH HOH . L 6 HOH A 51 163 191 HOH HOH . M 6 HOH B 1 116 11 HOH HOH . M 6 HOH B 2 117 12 HOH HOH . M 6 HOH B 3 118 23 HOH HOH . M 6 HOH B 4 119 26 HOH HOH . M 6 HOH B 5 120 32 HOH HOH . M 6 HOH B 6 121 33 HOH HOH . M 6 HOH B 7 122 34 HOH HOH . M 6 HOH B 8 123 41 HOH HOH . M 6 HOH B 9 124 47 HOH HOH . M 6 HOH B 10 125 49 HOH HOH . M 6 HOH B 11 126 54 HOH HOH . M 6 HOH B 12 127 59 HOH HOH . M 6 HOH B 13 128 74 HOH HOH . M 6 HOH B 14 129 75 HOH HOH . M 6 HOH B 15 130 76 HOH HOH . M 6 HOH B 16 131 80 HOH HOH . M 6 HOH B 17 132 81 HOH HOH . M 6 HOH B 18 133 84 HOH HOH . M 6 HOH B 19 134 87 HOH HOH . M 6 HOH B 20 135 93 HOH HOH . M 6 HOH B 21 136 98 HOH HOH . M 6 HOH B 22 137 99 HOH HOH . M 6 HOH B 23 138 103 HOH HOH . M 6 HOH B 24 139 105 HOH HOH . M 6 HOH B 25 140 107 HOH HOH . M 6 HOH B 26 141 113 HOH HOH . M 6 HOH B 27 142 118 HOH HOH . M 6 HOH B 28 143 123 HOH HOH . M 6 HOH B 29 144 125 HOH HOH . M 6 HOH B 30 145 127 HOH HOH . M 6 HOH B 31 146 130 HOH HOH . M 6 HOH B 32 147 134 HOH HOH . M 6 HOH B 33 148 136 HOH HOH . M 6 HOH B 34 149 138 HOH HOH . M 6 HOH B 35 150 139 HOH HOH . M 6 HOH B 36 151 140 HOH HOH . M 6 HOH B 37 152 141 HOH HOH . M 6 HOH B 38 153 149 HOH HOH . M 6 HOH B 39 154 151 HOH HOH . M 6 HOH B 40 155 156 HOH HOH . M 6 HOH B 41 156 159 HOH HOH . M 6 HOH B 42 157 160 HOH HOH . M 6 HOH B 43 158 166 HOH HOH . M 6 HOH B 44 159 168 HOH HOH . M 6 HOH B 45 160 172 HOH HOH . M 6 HOH B 46 161 174 HOH HOH . M 6 HOH B 47 162 175 HOH HOH . M 6 HOH B 48 163 177 HOH HOH . M 6 HOH B 49 164 180 HOH HOH . M 6 HOH B 50 165 181 HOH HOH . M 6 HOH B 51 166 186 HOH HOH . M 6 HOH B 52 167 188 HOH HOH . N 6 HOH C 1 114 1 HOH HOH . N 6 HOH C 2 115 2 HOH HOH . N 6 HOH C 3 116 7 HOH HOH . N 6 HOH C 4 117 10 HOH HOH . N 6 HOH C 5 118 16 HOH HOH . N 6 HOH C 6 119 21 HOH HOH . N 6 HOH C 7 120 36 HOH HOH . N 6 HOH C 8 121 45 HOH HOH . N 6 HOH C 9 122 48 HOH HOH . N 6 HOH C 10 123 50 HOH HOH . N 6 HOH C 11 124 51 HOH HOH . N 6 HOH C 12 125 55 HOH HOH . N 6 HOH C 13 126 57 HOH HOH . N 6 HOH C 14 127 60 HOH HOH . N 6 HOH C 15 128 62 HOH HOH . N 6 HOH C 16 129 67 HOH HOH . N 6 HOH C 17 130 68 HOH HOH . N 6 HOH C 18 131 72 HOH HOH . N 6 HOH C 19 132 73 HOH HOH . N 6 HOH C 20 133 88 HOH HOH . N 6 HOH C 21 134 89 HOH HOH . N 6 HOH C 22 135 95 HOH HOH . N 6 HOH C 23 136 100 HOH HOH . N 6 HOH C 24 137 102 HOH HOH . N 6 HOH C 25 138 104 HOH HOH . N 6 HOH C 26 139 108 HOH HOH . N 6 HOH C 27 140 111 HOH HOH . N 6 HOH C 28 141 112 HOH HOH . N 6 HOH C 29 142 116 HOH HOH . N 6 HOH C 30 143 119 HOH HOH . N 6 HOH C 31 144 128 HOH HOH . N 6 HOH C 32 145 131 HOH HOH . N 6 HOH C 33 146 135 HOH HOH . N 6 HOH C 34 147 137 HOH HOH . N 6 HOH C 35 148 143 HOH HOH . N 6 HOH C 36 149 145 HOH HOH . N 6 HOH C 37 150 157 HOH HOH . N 6 HOH C 38 151 162 HOH HOH . N 6 HOH C 39 152 164 HOH HOH . N 6 HOH C 40 153 165 HOH HOH . N 6 HOH C 41 154 167 HOH HOH . N 6 HOH C 42 155 171 HOH HOH . N 6 HOH C 43 156 183 HOH HOH . N 6 HOH C 44 157 185 HOH HOH . N 6 HOH C 45 158 187 HOH HOH . O 6 HOH D 1 116 6 HOH HOH . O 6 HOH D 2 117 8 HOH HOH . O 6 HOH D 3 118 14 HOH HOH . O 6 HOH D 4 119 15 HOH HOH . O 6 HOH D 5 120 18 HOH HOH . O 6 HOH D 6 121 19 HOH HOH . O 6 HOH D 7 122 25 HOH HOH . O 6 HOH D 8 123 27 HOH HOH . O 6 HOH D 9 124 28 HOH HOH . O 6 HOH D 10 125 29 HOH HOH . O 6 HOH D 11 126 30 HOH HOH . O 6 HOH D 12 127 35 HOH HOH . O 6 HOH D 13 128 38 HOH HOH . O 6 HOH D 14 129 42 HOH HOH . O 6 HOH D 15 130 43 HOH HOH . O 6 HOH D 16 131 61 HOH HOH . O 6 HOH D 17 132 63 HOH HOH . O 6 HOH D 18 133 66 HOH HOH . O 6 HOH D 19 134 70 HOH HOH . O 6 HOH D 20 135 71 HOH HOH . O 6 HOH D 21 136 78 HOH HOH . O 6 HOH D 22 137 83 HOH HOH . O 6 HOH D 23 138 86 HOH HOH . O 6 HOH D 24 139 91 HOH HOH . O 6 HOH D 25 140 92 HOH HOH . O 6 HOH D 26 141 94 HOH HOH . O 6 HOH D 27 142 97 HOH HOH . O 6 HOH D 28 143 101 HOH HOH . O 6 HOH D 29 144 109 HOH HOH . O 6 HOH D 30 145 110 HOH HOH . O 6 HOH D 31 146 117 HOH HOH . O 6 HOH D 32 147 120 HOH HOH . O 6 HOH D 33 148 122 HOH HOH . O 6 HOH D 34 149 129 HOH HOH . O 6 HOH D 35 150 132 HOH HOH . O 6 HOH D 36 151 133 HOH HOH . O 6 HOH D 37 152 148 HOH HOH . O 6 HOH D 38 153 161 HOH HOH . O 6 HOH D 39 154 173 HOH HOH . O 6 HOH D 40 155 176 HOH HOH . O 6 HOH D 41 156 179 HOH HOH . O 6 HOH D 42 157 182 HOH HOH . O 6 HOH D 43 158 184 HOH HOH . O 6 HOH D 44 159 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . K 5 41.718 -24.102 44.964 1 29.47 ? O1 PG4 115 D 1 HETATM 2 C C1 PG4 . . . K 5 42.365 -25.169 44.259 1 28.94 ? C1 PG4 115 D 1 HETATM 3 C C2 PG4 . . . K 5 41.308 -25.935 43.473 1 29.43 ? C2 PG4 115 D 1 HETATM 4 O O2 PG4 . . . K 5 41.713 -27.268 43.151 1 32.76 ? O2 PG4 115 D 1 HETATM 5 C C3 PG4 . . . K 5 40.575 -28.102 42.917 1 30.96 ? C3 PG4 115 D 1 HETATM 6 C C4 PG4 . . . K 5 40.729 -29.407 43.694 1 29.88 ? C4 PG4 115 D 1 HETATM 7 O O3 PG4 . . . K 5 39.528 -29.732 44.395 1 25.82 ? O3 PG4 115 D 1 HETATM 8 C C5 PG4 . . . K 5 39.792 -30.679 45.43 1 28.26 ? C5 PG4 115 D 1 HETATM 9 C C6 PG4 . . . K 5 38.9 -30.418 46.638 1 25.13 ? C6 PG4 115 D 1 HETATM 10 O O4 PG4 . . . K 5 39.621 -30.687 47.844 1 26.51 ? O4 PG4 115 D 1 HETATM 11 C C7 PG4 . . . K 5 39.553 -29.582 48.752 1 21.68 ? C7 PG4 115 D 1 HETATM 12 C C8 PG4 . . . K 5 40.832 -29.487 49.568 1 19.33 ? C8 PG4 115 D 1 HETATM 13 O O5 PG4 . . . K 5 41.307 -28.135 49.54 1 20.69 ? O5 PG4 115 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #