data_3DUX
#
_model_server_result.job_id            iGyRdS4rN6TVD7naBt12VA 
_model_server_result.datetime_utc      '2024-11-26 08:29:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dux 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":903}' 
#
_entry.id    3DUX 
#
_exptl.entry_id    3DUX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.5 
_cell.angle_gamma         90 
_cell.entry_id            3DUX 
_cell.length_a            70.02 
_cell.length_b            71.44 
_cell.length_c            72.79 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DUX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3DUX 
_atom_sites.fract_transf_matrix[1][1]    0.014282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002647 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013997 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013972 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 64U H 1 901 901 64U 64U . 
E 5 NA H 1 902 902 NA NA . 
F 5 NA H 1 903 903 NA NA . 
G 6 HOH L 1 1004 1004 HOH HOH . 
G 6 HOH L 2 1009 1009 HOH HOH . 
G 6 HOH L 3 1010 1010 HOH HOH . 
G 6 HOH L 4 1030 1030 HOH HOH . 
G 6 HOH L 5 1035 1035 HOH HOH . 
G 6 HOH L 6 1062 1062 HOH HOH . 
G 6 HOH L 7 1075 1075 HOH HOH . 
G 6 HOH L 8 1095 1095 HOH HOH . 
G 6 HOH L 9 1100 1100 HOH HOH . 
G 6 HOH L 10 1108 1108 HOH HOH . 
G 6 HOH L 11 1119 1119 HOH HOH . 
G 6 HOH L 12 1129 1129 HOH HOH . 
G 6 HOH L 13 1137 1137 HOH HOH . 
G 6 HOH L 14 1149 1149 HOH HOH . 
G 6 HOH L 15 1153 1153 HOH HOH . 
G 6 HOH L 16 1156 1156 HOH HOH . 
H 6 HOH H 1 1001 1001 HOH HOH . 
H 6 HOH H 2 1002 1002 HOH HOH . 
H 6 HOH H 3 1003 1003 HOH HOH . 
H 6 HOH H 4 1005 1005 HOH HOH . 
H 6 HOH H 5 1006 1006 HOH HOH . 
H 6 HOH H 6 1007 1007 HOH HOH . 
H 6 HOH H 7 1008 1008 HOH HOH . 
H 6 HOH H 8 1011 1011 HOH HOH . 
H 6 HOH H 9 1012 1012 HOH HOH . 
H 6 HOH H 10 1013 1013 HOH HOH . 
H 6 HOH H 11 1014 1014 HOH HOH . 
H 6 HOH H 12 1015 1015 HOH HOH . 
H 6 HOH H 13 1016 1016 HOH HOH . 
H 6 HOH H 14 1017 1017 HOH HOH . 
H 6 HOH H 15 1018 1018 HOH HOH . 
H 6 HOH H 16 1019 1019 HOH HOH . 
H 6 HOH H 17 1020 1020 HOH HOH . 
H 6 HOH H 18 1021 1021 HOH HOH . 
H 6 HOH H 19 1022 1022 HOH HOH . 
H 6 HOH H 20 1023 1023 HOH HOH . 
H 6 HOH H 21 1024 1024 HOH HOH . 
H 6 HOH H 22 1025 1025 HOH HOH . 
H 6 HOH H 23 1026 1026 HOH HOH . 
H 6 HOH H 24 1027 1027 HOH HOH . 
H 6 HOH H 25 1028 1028 HOH HOH . 
H 6 HOH H 26 1029 1029 HOH HOH . 
H 6 HOH H 27 1031 1031 HOH HOH . 
H 6 HOH H 28 1032 1032 HOH HOH . 
H 6 HOH H 29 1033 1033 HOH HOH . 
H 6 HOH H 30 1034 1034 HOH HOH . 
H 6 HOH H 31 1036 1036 HOH HOH . 
H 6 HOH H 32 1037 1037 HOH HOH . 
H 6 HOH H 33 1038 1038 HOH HOH . 
H 6 HOH H 34 1039 1039 HOH HOH . 
H 6 HOH H 35 1040 1040 HOH HOH . 
H 6 HOH H 36 1041 1041 HOH HOH . 
H 6 HOH H 37 1042 1042 HOH HOH . 
H 6 HOH H 38 1043 1043 HOH HOH . 
H 6 HOH H 39 1044 1044 HOH HOH . 
H 6 HOH H 40 1045 1045 HOH HOH . 
H 6 HOH H 41 1046 1046 HOH HOH . 
H 6 HOH H 42 1047 1047 HOH HOH . 
H 6 HOH H 43 1048 1048 HOH HOH . 
H 6 HOH H 44 1049 1049 HOH HOH . 
H 6 HOH H 45 1050 1050 HOH HOH . 
H 6 HOH H 46 1051 1051 HOH HOH . 
H 6 HOH H 47 1052 1052 HOH HOH . 
H 6 HOH H 48 1053 1053 HOH HOH . 
H 6 HOH H 49 1054 1054 HOH HOH . 
H 6 HOH H 50 1055 1055 HOH HOH . 
H 6 HOH H 51 1056 1056 HOH HOH . 
H 6 HOH H 52 1057 1057 HOH HOH . 
H 6 HOH H 53 1058 1058 HOH HOH . 
H 6 HOH H 54 1059 1059 HOH HOH . 
H 6 HOH H 55 1060 1060 HOH HOH . 
H 6 HOH H 56 1061 1061 HOH HOH . 
H 6 HOH H 57 1063 1063 HOH HOH . 
H 6 HOH H 58 1064 1064 HOH HOH . 
H 6 HOH H 59 1065 1065 HOH HOH . 
H 6 HOH H 60 1067 1067 HOH HOH . 
H 6 HOH H 61 1068 1068 HOH HOH . 
H 6 HOH H 62 1069 1069 HOH HOH . 
H 6 HOH H 63 1070 1070 HOH HOH . 
H 6 HOH H 64 1071 1071 HOH HOH . 
H 6 HOH H 65 1072 1072 HOH HOH . 
H 6 HOH H 66 1073 1073 HOH HOH . 
H 6 HOH H 67 1074 1074 HOH HOH . 
H 6 HOH H 68 1076 1076 HOH HOH . 
H 6 HOH H 69 1077 1077 HOH HOH . 
H 6 HOH H 70 1078 1078 HOH HOH . 
H 6 HOH H 71 1079 1079 HOH HOH . 
H 6 HOH H 72 1080 1080 HOH HOH . 
H 6 HOH H 73 1081 1081 HOH HOH . 
H 6 HOH H 74 1082 1082 HOH HOH . 
H 6 HOH H 75 1083 1083 HOH HOH . 
H 6 HOH H 76 1084 1084 HOH HOH . 
H 6 HOH H 77 1085 1085 HOH HOH . 
H 6 HOH H 78 1086 1086 HOH HOH . 
H 6 HOH H 79 1087 1087 HOH HOH . 
H 6 HOH H 80 1088 1088 HOH HOH . 
H 6 HOH H 81 1089 1089 HOH HOH . 
H 6 HOH H 82 1090 1090 HOH HOH . 
H 6 HOH H 83 1091 1091 HOH HOH . 
H 6 HOH H 84 1092 1092 HOH HOH . 
H 6 HOH H 85 1093 1093 HOH HOH . 
H 6 HOH H 86 1094 1094 HOH HOH . 
H 6 HOH H 87 1096 1096 HOH HOH . 
H 6 HOH H 88 1097 1097 HOH HOH . 
H 6 HOH H 89 1098 1098 HOH HOH . 
H 6 HOH H 90 1099 1099 HOH HOH . 
H 6 HOH H 91 1101 1101 HOH HOH . 
H 6 HOH H 92 1102 1102 HOH HOH . 
H 6 HOH H 93 1103 1103 HOH HOH . 
H 6 HOH H 94 1104 1104 HOH HOH . 
H 6 HOH H 95 1105 1105 HOH HOH . 
H 6 HOH H 96 1106 1106 HOH HOH . 
H 6 HOH H 97 1107 1107 HOH HOH . 
H 6 HOH H 98 1109 1109 HOH HOH . 
H 6 HOH H 99 1110 1110 HOH HOH . 
H 6 HOH H 100 1111 1111 HOH HOH . 
H 6 HOH H 101 1112 1112 HOH HOH . 
H 6 HOH H 102 1113 1113 HOH HOH . 
H 6 HOH H 103 1114 1114 HOH HOH . 
H 6 HOH H 104 1115 1115 HOH HOH . 
H 6 HOH H 105 1116 1116 HOH HOH . 
H 6 HOH H 106 1117 1117 HOH HOH . 
H 6 HOH H 107 1120 1120 HOH HOH . 
H 6 HOH H 108 1121 1121 HOH HOH . 
H 6 HOH H 109 1122 1122 HOH HOH . 
H 6 HOH H 110 1123 1123 HOH HOH . 
H 6 HOH H 111 1124 1124 HOH HOH . 
H 6 HOH H 112 1125 1125 HOH HOH . 
H 6 HOH H 113 1126 1126 HOH HOH . 
H 6 HOH H 114 1127 1127 HOH HOH . 
H 6 HOH H 115 1128 1128 HOH HOH . 
H 6 HOH H 116 1130 1130 HOH HOH . 
H 6 HOH H 117 1131 1131 HOH HOH . 
H 6 HOH H 118 1132 1132 HOH HOH . 
H 6 HOH H 119 1133 1133 HOH HOH . 
H 6 HOH H 120 1134 1134 HOH HOH . 
H 6 HOH H 121 1135 1135 HOH HOH . 
H 6 HOH H 122 1136 1136 HOH HOH . 
H 6 HOH H 123 1138 1138 HOH HOH . 
H 6 HOH H 124 1139 1139 HOH HOH . 
H 6 HOH H 125 1140 1140 HOH HOH . 
H 6 HOH H 126 1141 1141 HOH HOH . 
H 6 HOH H 127 1142 1142 HOH HOH . 
H 6 HOH H 128 1143 1143 HOH HOH . 
H 6 HOH H 129 1144 1144 HOH HOH . 
H 6 HOH H 130 1145 1145 HOH HOH . 
H 6 HOH H 131 1146 1146 HOH HOH . 
H 6 HOH H 132 1147 1147 HOH HOH . 
H 6 HOH H 133 1148 1148 HOH HOH . 
H 6 HOH H 134 1150 1150 HOH HOH . 
H 6 HOH H 135 1151 1151 HOH HOH . 
H 6 HOH H 136 1152 1152 HOH HOH . 
H 6 HOH H 137 1154 1154 HOH HOH . 
H 6 HOH H 138 1155 1155 HOH HOH . 
H 6 HOH H 139 1157 1157 HOH HOH . 
H 6 HOH H 140 1158 1158 HOH HOH . 
I 6 HOH I 1 1066 1066 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               3.602 
_atom_site.Cartn_y               20.179 
_atom_site.Cartn_z               33.344 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.44 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           903 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#