data_3DV3 # _model_server_result.job_id 1zxpLsF4FNb0qePLvUZcOw _model_server_result.datetime_utc '2024-11-07 09:55:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dv3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":9001}' # _entry.id 3DV3 # _exptl.entry_id 3DV3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 526.246 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)-5-[(2-hydroxyethoxy)methyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DV3 _cell.length_a 81.596 _cell.length_b 81.596 _cell.length_c 129.966 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 81.596 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 1 1_555 A OD1 ASN 135 A ASN 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc2 B MG MG . A MG 1 1_555 A OD2 ASP 148 A ASP 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc3 B MG MG . A MG 1 1_555 C O1B ATP . A ATP 9000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc4 B MG MG . A MG 1 1_555 C O2A ATP . A ATP 9000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc5 B MG MG . A MG 1 1_555 F O HOH . A HOH 9020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 B MG MG . A MG 1 1_555 F O HOH . A HOH 9078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'C18 H18 F3 I N2 O5' _chem_comp.formula_weight 526.246 _chem_comp.id MEK _chem_comp.mon_nstd_flag . _chem_comp.name 3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)-5-[(2-hydroxyethoxy)methyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O2 MEK sing 280 n n N1 C13 MEK sing 281 n n N1 HN1 MEK sing 282 n n C3 C4 MEK doub 283 n y C4 I1 MEK sing 284 n n C4 C5 MEK sing 285 n y C6 C5 MEK doub 286 n y C5 H5 MEK sing 287 n n C1 C6 MEK sing 288 n y C6 F1 MEK sing 289 n n C8 C7 MEK doub 290 n y C7 C13 MEK sing 291 n n C7 C12 MEK sing 292 n y C9 C8 MEK sing 293 n y C8 H8 MEK sing 294 n n C9 C10 MEK doub 295 n y F3 C10 MEK sing 296 n n C10 C11 MEK sing 297 n y C13 O1 MEK doub 298 n n C14 C15 MEK sing 299 n n C15 O3 MEK sing 300 n n C15 H15 MEK sing 301 n n C15 H15A MEK sing 302 n n C18 C17 MEK sing 303 n n C17 O4 MEK sing 304 n n C17 H17 MEK sing 305 n n C17 H17A MEK sing 306 n n C16 C9 MEK sing 307 n n O4 C16 MEK sing 308 n n C16 H16 MEK sing 309 n n C16 H16A MEK sing 310 n n O5 C18 MEK sing 311 n n C18 H18 MEK sing 312 n n C18 H18A MEK sing 313 n n O5 HO5 MEK sing 314 n n C11 C12 MEK doub 315 n y C11 F2 MEK sing 316 n n C12 N2 MEK sing 317 n n N2 C1 MEK sing 318 n n N2 HN2 MEK sing 319 n n C2 C1 MEK doub 320 n y C2 C3 MEK sing 321 n y C2 H2 MEK sing 322 n n C3 H3 MEK sing 323 n n C14 O2 MEK sing 324 n n C14 H14 MEK sing 325 n n C14 H14A MEK sing 326 n n O3 HO3 MEK sing 327 n n # _atom_sites.entry_id 3DV3 _atom_sites.fract_transf_matrix[1][1] 0.012256 _atom_sites.fract_transf_matrix[1][2] 0.007076 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1 1 MG MG . C 3 ATP A 1 9000 9000 ATP ATP . D 4 MEK A 1 9001 1 MEK MEK . E 5 GOL A 1 9003 9003 GOL GOL . F 6 HOH A 1 9004 1 HOH HOH . F 6 HOH A 2 9005 2 HOH HOH . F 6 HOH A 3 9006 3 HOH HOH . F 6 HOH A 4 9007 4 HOH HOH . F 6 HOH A 5 9008 5 HOH HOH . F 6 HOH A 6 9009 6 HOH HOH . F 6 HOH A 7 9010 7 HOH HOH . F 6 HOH A 8 9011 8 HOH HOH . F 6 HOH A 9 9012 9 HOH HOH . F 6 HOH A 10 9013 10 HOH HOH . F 6 HOH A 11 9014 11 HOH HOH . F 6 HOH A 12 9015 12 HOH HOH . F 6 HOH A 13 9016 13 HOH HOH . F 6 HOH A 14 9017 14 HOH HOH . F 6 HOH A 15 9018 15 HOH HOH . F 6 HOH A 16 9019 16 HOH HOH . F 6 HOH A 17 9020 17 HOH HOH . F 6 HOH A 18 9021 18 HOH HOH . F 6 HOH A 19 9022 19 HOH HOH . F 6 HOH A 20 9023 20 HOH HOH . F 6 HOH A 21 9024 21 HOH HOH . F 6 HOH A 22 9025 22 HOH HOH . F 6 HOH A 23 9026 23 HOH HOH . F 6 HOH A 24 9027 24 HOH HOH . F 6 HOH A 25 9028 25 HOH HOH . F 6 HOH A 26 9029 27 HOH HOH . F 6 HOH A 27 9030 28 HOH HOH . F 6 HOH A 28 9031 31 HOH HOH . F 6 HOH A 29 9032 32 HOH HOH . F 6 HOH A 30 9033 33 HOH HOH . F 6 HOH A 31 9034 34 HOH HOH . F 6 HOH A 32 9035 35 HOH HOH . F 6 HOH A 33 9036 36 HOH HOH . F 6 HOH A 34 9037 37 HOH HOH . F 6 HOH A 35 9038 38 HOH HOH . F 6 HOH A 36 9039 39 HOH HOH . F 6 HOH A 37 9040 40 HOH HOH . F 6 HOH A 38 9041 41 HOH HOH . F 6 HOH A 39 9042 42 HOH HOH . F 6 HOH A 40 9043 44 HOH HOH . F 6 HOH A 41 9044 45 HOH HOH . F 6 HOH A 42 9045 46 HOH HOH . F 6 HOH A 43 9046 47 HOH HOH . F 6 HOH A 44 9047 48 HOH HOH . F 6 HOH A 45 9048 49 HOH HOH . F 6 HOH A 46 9049 50 HOH HOH . F 6 HOH A 47 9050 51 HOH HOH . F 6 HOH A 48 9051 52 HOH HOH . F 6 HOH A 49 9052 53 HOH HOH . F 6 HOH A 50 9053 54 HOH HOH . F 6 HOH A 51 9054 55 HOH HOH . F 6 HOH A 52 9055 56 HOH HOH . F 6 HOH A 53 9056 57 HOH HOH . F 6 HOH A 54 9057 59 HOH HOH . F 6 HOH A 55 9058 60 HOH HOH . F 6 HOH A 56 9059 61 HOH HOH . F 6 HOH A 57 9060 62 HOH HOH . F 6 HOH A 58 9061 65 HOH HOH . F 6 HOH A 59 9062 66 HOH HOH . F 6 HOH A 60 9063 67 HOH HOH . F 6 HOH A 61 9064 69 HOH HOH . F 6 HOH A 62 9065 70 HOH HOH . F 6 HOH A 63 9066 71 HOH HOH . F 6 HOH A 64 9067 73 HOH HOH . F 6 HOH A 65 9068 74 HOH HOH . F 6 HOH A 66 9069 75 HOH HOH . F 6 HOH A 67 9070 76 HOH HOH . F 6 HOH A 68 9071 77 HOH HOH . F 6 HOH A 69 9072 78 HOH HOH . F 6 HOH A 70 9073 79 HOH HOH . F 6 HOH A 71 9074 80 HOH HOH . F 6 HOH A 72 9075 81 HOH HOH . F 6 HOH A 73 9076 82 HOH HOH . F 6 HOH A 74 9077 83 HOH HOH . F 6 HOH A 75 9078 84 HOH HOH . F 6 HOH A 76 9079 85 HOH HOH . F 6 HOH A 77 9080 86 HOH HOH . F 6 HOH A 78 9081 87 HOH HOH . F 6 HOH A 79 9082 88 HOH HOH . F 6 HOH A 80 9083 89 HOH HOH . F 6 HOH A 81 9084 90 HOH HOH . F 6 HOH A 82 9085 91 HOH HOH . F 6 HOH A 83 9086 92 HOH HOH . F 6 HOH A 84 9087 93 HOH HOH . F 6 HOH A 85 9088 94 HOH HOH . F 6 HOH A 86 9089 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MEK . . . D 4 40.581 -11.415 -0.521 1 49.95 ? N1 MEK 9001 A 1 HETATM 2 C C4 MEK . . . D 4 41.76 -17.933 2.926 1 47.93 ? C4 MEK 9001 A 1 HETATM 3 C C5 MEK . . . D 4 41.95 -16.728 3.594 1 40.97 ? C5 MEK 9001 A 1 HETATM 4 C C6 MEK . . . D 4 41.262 -15.592 3.236 1 47.33 ? C6 MEK 9001 A 1 HETATM 5 C C7 MEK . . . D 4 38.995 -13.067 0.2 1 44.29 ? C7 MEK 9001 A 1 HETATM 6 C C8 MEK . . . D 4 38.124 -12.749 -0.795 1 41.65 ? C8 MEK 9001 A 1 HETATM 7 C C10 MEK . . . D 4 36.913 -14.708 -0.361 1 42.75 ? C10 MEK 9001 A 1 HETATM 8 C C13 MEK . . . D 4 40.078 -12.101 0.458 1 46.82 ? C13 MEK 9001 A 1 HETATM 9 C C15 MEK . . . D 4 42.019 -8.319 0.507 1 58.33 ? C15 MEK 9001 A 1 HETATM 10 C C17 MEK . . . D 4 37.281 -13.75 -4.006 1 50.21 ? C17 MEK 9001 A 1 HETATM 11 F F3 MEK . . . D 4 35.898 -15.47 -0.676 1 44.84 ? F3 MEK 9001 A 1 HETATM 12 C C9 MEK . . . D 4 37.084 -13.58 -1.077 1 44.54 ? C9 MEK 9001 A 1 HETATM 13 C C16 MEK . . . D 4 36.112 -13.248 -2.161 1 46.44 ? C16 MEK 9001 A 1 HETATM 14 O O4 MEK . . . D 4 36.754 -12.693 -3.263 1 51.06 ? O4 MEK 9001 A 1 HETATM 15 C C18 MEK . . . D 4 38.188 -13.161 -5.044 1 52.52 ? C18 MEK 9001 A 1 HETATM 16 O O5 MEK . . . D 4 37.384 -12.42 -5.928 1 55.53 ? O5 MEK 9001 A 1 HETATM 17 C C11 MEK . . . D 4 37.776 -15.029 0.645 1 42.38 ? C11 MEK 9001 A 1 HETATM 18 F F2 MEK . . . D 4 37.569 -16.135 1.313 1 44.96 ? F2 MEK 9001 A 1 HETATM 19 C C12 MEK . . . D 4 38.841 -14.215 0.93 1 43.39 ? C12 MEK 9001 A 1 HETATM 20 N N2 MEK . . . D 4 39.729 -14.457 1.905 1 46.49 ? N2 MEK 9001 A 1 HETATM 21 C C1 MEK . . . D 4 40.367 -15.602 2.206 1 46.25 ? C1 MEK 9001 A 1 HETATM 22 F F1 MEK . . . D 4 41.466 -14.463 3.874 1 43.87 ? F1 MEK 9001 A 1 HETATM 23 C C2 MEK . . . D 4 40.165 -16.78 1.534 1 46.12 ? C2 MEK 9001 A 1 HETATM 24 C C3 MEK . . . D 4 40.838 -17.918 1.885 1 39.39 ? C3 MEK 9001 A 1 HETATM 25 I I1 MEK . . . D 4 42.777 -19.685 3.455 1 47.2 ? I1 MEK 9001 A 1 HETATM 26 O O1 MEK . . . D 4 40.433 -11.91 1.567 1 46.78 ? O1 MEK 9001 A 1 HETATM 27 O O2 MEK . . . D 4 41.55 -10.528 -0.25 1 63.03 ? O2 MEK 9001 A 1 HETATM 28 C C14 MEK . . . D 4 41.474 -9.159 -0.624 1 61.07 ? C14 MEK 9001 A 1 HETATM 29 O O3 MEK . . . D 4 41.155 -8.399 1.625 1 60.5 ? O3 MEK 9001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #