data_3DV4 # _model_server_result.job_id Ar8BPArvPoqk_BW8dpZz8w _model_server_result.datetime_utc '2024-11-26 14:04:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":115}' # _entry.id 3DV4 # _exptl.entry_id 3DV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DV4 _cell.length_a 72.51 _cell.length_b 72.51 _cell.length_c 85.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 94 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DV4 _atom_sites.fract_transf_matrix[1][1] 0.013791 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 115 115 MG MG . D 4 KDO B 1 114 114 KDO KDO . E 5 PG4 B 1 116 116 PG4 PG4 . F 6 HOH A 1 116 1 HOH HOH . F 6 HOH A 2 117 2 HOH HOH . F 6 HOH A 3 118 3 HOH HOH . F 6 HOH A 4 119 4 HOH HOH . F 6 HOH A 5 120 5 HOH HOH . F 6 HOH A 6 121 6 HOH HOH . F 6 HOH A 7 122 8 HOH HOH . F 6 HOH A 8 123 9 HOH HOH . F 6 HOH A 9 124 11 HOH HOH . F 6 HOH A 10 125 14 HOH HOH . F 6 HOH A 11 126 15 HOH HOH . F 6 HOH A 12 127 16 HOH HOH . F 6 HOH A 13 128 17 HOH HOH . F 6 HOH A 14 129 19 HOH HOH . F 6 HOH A 15 130 21 HOH HOH . F 6 HOH A 16 131 22 HOH HOH . F 6 HOH A 17 132 23 HOH HOH . F 6 HOH A 18 133 24 HOH HOH . F 6 HOH A 19 134 25 HOH HOH . F 6 HOH A 20 135 26 HOH HOH . F 6 HOH A 21 136 27 HOH HOH . F 6 HOH A 22 137 29 HOH HOH . F 6 HOH A 23 138 30 HOH HOH . F 6 HOH A 24 139 35 HOH HOH . F 6 HOH A 25 140 36 HOH HOH . F 6 HOH A 26 141 38 HOH HOH . F 6 HOH A 27 142 39 HOH HOH . F 6 HOH A 28 143 45 HOH HOH . F 6 HOH A 29 144 46 HOH HOH . F 6 HOH A 30 145 47 HOH HOH . F 6 HOH A 31 146 48 HOH HOH . F 6 HOH A 32 147 49 HOH HOH . F 6 HOH A 33 148 51 HOH HOH . F 6 HOH A 34 149 52 HOH HOH . F 6 HOH A 35 150 53 HOH HOH . F 6 HOH A 36 151 54 HOH HOH . F 6 HOH A 37 152 56 HOH HOH . F 6 HOH A 38 153 57 HOH HOH . F 6 HOH A 39 154 59 HOH HOH . F 6 HOH A 40 155 61 HOH HOH . F 6 HOH A 41 156 62 HOH HOH . F 6 HOH A 42 157 65 HOH HOH . F 6 HOH A 43 158 66 HOH HOH . F 6 HOH A 44 159 67 HOH HOH . F 6 HOH A 45 160 68 HOH HOH . F 6 HOH A 46 161 70 HOH HOH . F 6 HOH A 47 162 71 HOH HOH . F 6 HOH A 48 163 72 HOH HOH . F 6 HOH A 49 164 74 HOH HOH . F 6 HOH A 50 165 75 HOH HOH . F 6 HOH A 51 166 77 HOH HOH . F 6 HOH A 52 167 82 HOH HOH . F 6 HOH A 53 168 83 HOH HOH . F 6 HOH A 54 169 86 HOH HOH . F 6 HOH A 55 170 89 HOH HOH . F 6 HOH A 56 171 91 HOH HOH . F 6 HOH A 57 172 92 HOH HOH . F 6 HOH A 58 173 93 HOH HOH . F 6 HOH A 59 174 97 HOH HOH . F 6 HOH A 60 175 98 HOH HOH . F 6 HOH A 61 176 99 HOH HOH . F 6 HOH A 62 177 101 HOH HOH . F 6 HOH A 63 178 102 HOH HOH . F 6 HOH A 64 179 103 HOH HOH . F 6 HOH A 65 180 107 HOH HOH . F 6 HOH A 66 181 108 HOH HOH . F 6 HOH A 67 182 109 HOH HOH . F 6 HOH A 68 183 110 HOH HOH . F 6 HOH A 69 184 112 HOH HOH . F 6 HOH A 70 185 116 HOH HOH . F 6 HOH A 71 186 117 HOH HOH . F 6 HOH A 72 187 118 HOH HOH . F 6 HOH A 73 188 121 HOH HOH . F 6 HOH A 74 189 125 HOH HOH . F 6 HOH A 75 190 127 HOH HOH . G 6 HOH B 1 117 7 HOH HOH . G 6 HOH B 2 118 10 HOH HOH . G 6 HOH B 3 119 12 HOH HOH . G 6 HOH B 4 120 13 HOH HOH . G 6 HOH B 5 121 18 HOH HOH . G 6 HOH B 6 122 20 HOH HOH . G 6 HOH B 7 123 28 HOH HOH . G 6 HOH B 8 124 31 HOH HOH . G 6 HOH B 9 125 32 HOH HOH . G 6 HOH B 10 126 33 HOH HOH . G 6 HOH B 11 127 34 HOH HOH . G 6 HOH B 12 128 37 HOH HOH . G 6 HOH B 13 129 40 HOH HOH . G 6 HOH B 14 130 41 HOH HOH . G 6 HOH B 15 131 42 HOH HOH . G 6 HOH B 16 132 43 HOH HOH . G 6 HOH B 17 133 44 HOH HOH . G 6 HOH B 18 134 55 HOH HOH . G 6 HOH B 19 135 58 HOH HOH . G 6 HOH B 20 136 60 HOH HOH . G 6 HOH B 21 137 63 HOH HOH . G 6 HOH B 22 138 64 HOH HOH . G 6 HOH B 23 139 69 HOH HOH . G 6 HOH B 24 140 73 HOH HOH . G 6 HOH B 25 141 76 HOH HOH . G 6 HOH B 26 142 78 HOH HOH . G 6 HOH B 27 143 79 HOH HOH . G 6 HOH B 28 144 80 HOH HOH . G 6 HOH B 29 145 81 HOH HOH . G 6 HOH B 30 146 84 HOH HOH . G 6 HOH B 31 147 85 HOH HOH . G 6 HOH B 32 148 87 HOH HOH . G 6 HOH B 33 149 88 HOH HOH . G 6 HOH B 34 150 90 HOH HOH . G 6 HOH B 35 151 94 HOH HOH . G 6 HOH B 36 152 95 HOH HOH . G 6 HOH B 37 153 96 HOH HOH . G 6 HOH B 38 154 100 HOH HOH . G 6 HOH B 39 155 104 HOH HOH . G 6 HOH B 40 156 105 HOH HOH . G 6 HOH B 41 157 106 HOH HOH . G 6 HOH B 42 158 111 HOH HOH . G 6 HOH B 43 159 113 HOH HOH . G 6 HOH B 44 160 114 HOH HOH . G 6 HOH B 45 161 115 HOH HOH . G 6 HOH B 46 162 119 HOH HOH . G 6 HOH B 47 163 120 HOH HOH . G 6 HOH B 48 164 122 HOH HOH . G 6 HOH B 49 165 123 HOH HOH . G 6 HOH B 50 166 124 HOH HOH . G 6 HOH B 51 167 126 HOH HOH . G 6 HOH B 52 168 128 HOH HOH . G 6 HOH B 53 169 129 HOH HOH . G 6 HOH B 54 170 130 HOH HOH . G 6 HOH B 55 171 131 HOH HOH . G 6 HOH B 56 172 132 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 27.233 _atom_site.Cartn_y -4.654 _atom_site.Cartn_z 2.079 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 115 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #