data_3DV6
#
_model_server_result.job_id            dvNRXECx5DFPpxfIwT_6RA 
_model_server_result.datetime_utc      '2024-11-13 03:49:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dv6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":109}' 
#
_entry.id    3DV6 
#
_exptl.entry_id    3DV6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DV6 
_cell.length_a            71.42 
_cell.length_b            71.42 
_cell.length_c            85.08 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DV6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 94 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc1 C MG MG . A MG 109 1_555 G O HOH . A HOH 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc2 D MG MG . A MG 110 1_555 G O HOH . A HOH 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3DV6 
_atom_sites.fract_transf_matrix[1][1]    0.014002 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014002 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011754 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 109 109 MG MG . 
D 3 MG A 1 110 110 MG MG . 
E 4 KDO B 1 114 107 KDO KDO . 
F 5 PG4 B 1 115 108 PG4 PG4 . 
G 6 HOH A 1 111 1 HOH HOH . 
G 6 HOH A 2 112 2 HOH HOH . 
G 6 HOH A 3 113 5 HOH HOH . 
G 6 HOH A 4 114 6 HOH HOH . 
G 6 HOH A 5 115 7 HOH HOH . 
G 6 HOH A 6 116 9 HOH HOH . 
G 6 HOH A 7 117 10 HOH HOH . 
G 6 HOH A 8 118 11 HOH HOH . 
G 6 HOH A 9 119 13 HOH HOH . 
G 6 HOH A 10 120 15 HOH HOH . 
G 6 HOH A 11 121 16 HOH HOH . 
G 6 HOH A 12 122 18 HOH HOH . 
G 6 HOH A 13 123 21 HOH HOH . 
G 6 HOH A 14 124 24 HOH HOH . 
G 6 HOH A 15 125 29 HOH HOH . 
G 6 HOH A 16 126 30 HOH HOH . 
G 6 HOH A 17 127 31 HOH HOH . 
G 6 HOH A 18 128 32 HOH HOH . 
G 6 HOH A 19 129 33 HOH HOH . 
G 6 HOH A 20 130 34 HOH HOH . 
G 6 HOH A 21 131 35 HOH HOH . 
G 6 HOH A 22 132 36 HOH HOH . 
G 6 HOH A 23 133 37 HOH HOH . 
G 6 HOH A 24 134 39 HOH HOH . 
G 6 HOH A 25 135 40 HOH HOH . 
G 6 HOH A 26 136 41 HOH HOH . 
G 6 HOH A 27 137 44 HOH HOH . 
G 6 HOH A 28 138 45 HOH HOH . 
G 6 HOH A 29 139 50 HOH HOH . 
G 6 HOH A 30 140 51 HOH HOH . 
G 6 HOH A 31 141 52 HOH HOH . 
G 6 HOH A 32 142 55 HOH HOH . 
G 6 HOH A 33 143 56 HOH HOH . 
G 6 HOH A 34 144 58 HOH HOH . 
G 6 HOH A 35 145 59 HOH HOH . 
G 6 HOH A 36 146 62 HOH HOH . 
G 6 HOH A 37 147 65 HOH HOH . 
G 6 HOH A 38 148 68 HOH HOH . 
G 6 HOH A 39 149 69 HOH HOH . 
G 6 HOH A 40 150 70 HOH HOH . 
G 6 HOH A 41 151 71 HOH HOH . 
G 6 HOH A 42 152 73 HOH HOH . 
G 6 HOH A 43 153 77 HOH HOH . 
G 6 HOH A 44 154 78 HOH HOH . 
G 6 HOH A 45 155 79 HOH HOH . 
G 6 HOH A 46 156 82 HOH HOH . 
G 6 HOH A 47 157 85 HOH HOH . 
G 6 HOH A 48 158 90 HOH HOH . 
G 6 HOH A 49 159 91 HOH HOH . 
G 6 HOH A 50 160 93 HOH HOH . 
G 6 HOH A 51 161 94 HOH HOH . 
G 6 HOH A 52 162 95 HOH HOH . 
G 6 HOH A 53 163 98 HOH HOH . 
G 6 HOH A 54 164 101 HOH HOH . 
G 6 HOH A 55 165 103 HOH HOH . 
G 6 HOH A 56 166 104 HOH HOH . 
G 6 HOH A 57 167 105 HOH HOH . 
G 6 HOH A 58 168 107 HOH HOH . 
G 6 HOH A 59 169 109 HOH HOH . 
G 6 HOH A 60 170 110 HOH HOH . 
G 6 HOH A 61 171 111 HOH HOH . 
G 6 HOH A 62 172 112 HOH HOH . 
G 6 HOH A 63 173 113 HOH HOH . 
G 6 HOH A 64 174 116 HOH HOH . 
G 6 HOH A 65 175 118 HOH HOH . 
G 6 HOH A 66 176 119 HOH HOH . 
G 6 HOH A 67 177 120 HOH HOH . 
G 6 HOH A 68 178 121 HOH HOH . 
G 6 HOH A 69 179 127 HOH HOH . 
G 6 HOH A 70 180 128 HOH HOH . 
G 6 HOH A 71 181 130 HOH HOH . 
G 6 HOH A 72 182 131 HOH HOH . 
H 6 HOH B 1 116 3 HOH HOH . 
H 6 HOH B 2 117 4 HOH HOH . 
H 6 HOH B 3 118 8 HOH HOH . 
H 6 HOH B 4 119 12 HOH HOH . 
H 6 HOH B 5 120 14 HOH HOH . 
H 6 HOH B 6 121 17 HOH HOH . 
H 6 HOH B 7 122 19 HOH HOH . 
H 6 HOH B 8 123 20 HOH HOH . 
H 6 HOH B 9 124 22 HOH HOH . 
H 6 HOH B 10 125 23 HOH HOH . 
H 6 HOH B 11 126 25 HOH HOH . 
H 6 HOH B 12 127 26 HOH HOH . 
H 6 HOH B 13 128 27 HOH HOH . 
H 6 HOH B 14 129 28 HOH HOH . 
H 6 HOH B 15 130 38 HOH HOH . 
H 6 HOH B 16 131 42 HOH HOH . 
H 6 HOH B 17 132 43 HOH HOH . 
H 6 HOH B 18 133 46 HOH HOH . 
H 6 HOH B 19 134 47 HOH HOH . 
H 6 HOH B 20 135 48 HOH HOH . 
H 6 HOH B 21 136 49 HOH HOH . 
H 6 HOH B 22 137 53 HOH HOH . 
H 6 HOH B 23 138 54 HOH HOH . 
H 6 HOH B 24 139 57 HOH HOH . 
H 6 HOH B 25 140 60 HOH HOH . 
H 6 HOH B 26 141 61 HOH HOH . 
H 6 HOH B 27 142 63 HOH HOH . 
H 6 HOH B 28 143 64 HOH HOH . 
H 6 HOH B 29 144 66 HOH HOH . 
H 6 HOH B 30 145 67 HOH HOH . 
H 6 HOH B 31 146 72 HOH HOH . 
H 6 HOH B 32 147 74 HOH HOH . 
H 6 HOH B 33 148 75 HOH HOH . 
H 6 HOH B 34 149 76 HOH HOH . 
H 6 HOH B 35 150 80 HOH HOH . 
H 6 HOH B 36 151 81 HOH HOH . 
H 6 HOH B 37 152 83 HOH HOH . 
H 6 HOH B 38 153 84 HOH HOH . 
H 6 HOH B 39 154 86 HOH HOH . 
H 6 HOH B 40 155 87 HOH HOH . 
H 6 HOH B 41 156 88 HOH HOH . 
H 6 HOH B 42 157 89 HOH HOH . 
H 6 HOH B 43 158 92 HOH HOH . 
H 6 HOH B 44 159 96 HOH HOH . 
H 6 HOH B 45 160 97 HOH HOH . 
H 6 HOH B 46 161 99 HOH HOH . 
H 6 HOH B 47 162 100 HOH HOH . 
H 6 HOH B 48 163 102 HOH HOH . 
H 6 HOH B 49 164 106 HOH HOH . 
H 6 HOH B 50 165 108 HOH HOH . 
H 6 HOH B 51 166 114 HOH HOH . 
H 6 HOH B 52 167 115 HOH HOH . 
H 6 HOH B 53 168 117 HOH HOH . 
H 6 HOH B 54 169 122 HOH HOH . 
H 6 HOH B 55 170 123 HOH HOH . 
H 6 HOH B 56 171 124 HOH HOH . 
H 6 HOH B 57 172 125 HOH HOH . 
H 6 HOH B 58 173 126 HOH HOH . 
H 6 HOH B 59 174 129 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -27.061 
_atom_site.Cartn_y               3.536 
_atom_site.Cartn_z               -39.701 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.6 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           109 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#