data_3DV6 # _model_server_result.job_id ulNnYyZi3CdXtOXOogALeQ _model_server_result.datetime_utc '2024-11-13 03:34:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":115}' # _entry.id 3DV6 # _exptl.entry_id 3DV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DV6 _cell.length_a 71.42 _cell.length_b 71.42 _cell.length_c 85.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 94 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 C MG MG . A MG 109 1_555 G O HOH . A HOH 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 D MG MG . A MG 110 1_555 G O HOH . A HOH 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 246 n n O1 HO1 PG4 sing 247 n n C1 C2 PG4 sing 248 n n C1 H11 PG4 sing 249 n n C1 H12 PG4 sing 250 n n C2 O2 PG4 sing 251 n n C2 H21 PG4 sing 252 n n C2 H22 PG4 sing 253 n n O2 C3 PG4 sing 254 n n C3 C4 PG4 sing 255 n n C3 H31 PG4 sing 256 n n C3 H32 PG4 sing 257 n n C4 O3 PG4 sing 258 n n C4 H41 PG4 sing 259 n n C4 H42 PG4 sing 260 n n O3 C5 PG4 sing 261 n n C5 C6 PG4 sing 262 n n C5 H51 PG4 sing 263 n n C5 H52 PG4 sing 264 n n C6 O4 PG4 sing 265 n n C6 H61 PG4 sing 266 n n C6 H62 PG4 sing 267 n n O4 C7 PG4 sing 268 n n C7 C8 PG4 sing 269 n n C7 H71 PG4 sing 270 n n C7 H72 PG4 sing 271 n n C8 O5 PG4 sing 272 n n C8 H81 PG4 sing 273 n n C8 H82 PG4 sing 274 n n O5 HO5 PG4 sing 275 n n # _atom_sites.entry_id 3DV6 _atom_sites.fract_transf_matrix[1][1] 0.014002 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 109 109 MG MG . D 3 MG A 1 110 110 MG MG . E 4 KDO B 1 114 107 KDO KDO . F 5 PG4 B 1 115 108 PG4 PG4 . G 6 HOH A 1 111 1 HOH HOH . G 6 HOH A 2 112 2 HOH HOH . G 6 HOH A 3 113 5 HOH HOH . G 6 HOH A 4 114 6 HOH HOH . G 6 HOH A 5 115 7 HOH HOH . G 6 HOH A 6 116 9 HOH HOH . G 6 HOH A 7 117 10 HOH HOH . G 6 HOH A 8 118 11 HOH HOH . G 6 HOH A 9 119 13 HOH HOH . G 6 HOH A 10 120 15 HOH HOH . G 6 HOH A 11 121 16 HOH HOH . G 6 HOH A 12 122 18 HOH HOH . G 6 HOH A 13 123 21 HOH HOH . G 6 HOH A 14 124 24 HOH HOH . G 6 HOH A 15 125 29 HOH HOH . G 6 HOH A 16 126 30 HOH HOH . G 6 HOH A 17 127 31 HOH HOH . G 6 HOH A 18 128 32 HOH HOH . G 6 HOH A 19 129 33 HOH HOH . G 6 HOH A 20 130 34 HOH HOH . G 6 HOH A 21 131 35 HOH HOH . G 6 HOH A 22 132 36 HOH HOH . G 6 HOH A 23 133 37 HOH HOH . G 6 HOH A 24 134 39 HOH HOH . G 6 HOH A 25 135 40 HOH HOH . G 6 HOH A 26 136 41 HOH HOH . G 6 HOH A 27 137 44 HOH HOH . G 6 HOH A 28 138 45 HOH HOH . G 6 HOH A 29 139 50 HOH HOH . G 6 HOH A 30 140 51 HOH HOH . G 6 HOH A 31 141 52 HOH HOH . G 6 HOH A 32 142 55 HOH HOH . G 6 HOH A 33 143 56 HOH HOH . G 6 HOH A 34 144 58 HOH HOH . G 6 HOH A 35 145 59 HOH HOH . G 6 HOH A 36 146 62 HOH HOH . G 6 HOH A 37 147 65 HOH HOH . G 6 HOH A 38 148 68 HOH HOH . G 6 HOH A 39 149 69 HOH HOH . G 6 HOH A 40 150 70 HOH HOH . G 6 HOH A 41 151 71 HOH HOH . G 6 HOH A 42 152 73 HOH HOH . G 6 HOH A 43 153 77 HOH HOH . G 6 HOH A 44 154 78 HOH HOH . G 6 HOH A 45 155 79 HOH HOH . G 6 HOH A 46 156 82 HOH HOH . G 6 HOH A 47 157 85 HOH HOH . G 6 HOH A 48 158 90 HOH HOH . G 6 HOH A 49 159 91 HOH HOH . G 6 HOH A 50 160 93 HOH HOH . G 6 HOH A 51 161 94 HOH HOH . G 6 HOH A 52 162 95 HOH HOH . G 6 HOH A 53 163 98 HOH HOH . G 6 HOH A 54 164 101 HOH HOH . G 6 HOH A 55 165 103 HOH HOH . G 6 HOH A 56 166 104 HOH HOH . G 6 HOH A 57 167 105 HOH HOH . G 6 HOH A 58 168 107 HOH HOH . G 6 HOH A 59 169 109 HOH HOH . G 6 HOH A 60 170 110 HOH HOH . G 6 HOH A 61 171 111 HOH HOH . G 6 HOH A 62 172 112 HOH HOH . G 6 HOH A 63 173 113 HOH HOH . G 6 HOH A 64 174 116 HOH HOH . G 6 HOH A 65 175 118 HOH HOH . G 6 HOH A 66 176 119 HOH HOH . G 6 HOH A 67 177 120 HOH HOH . G 6 HOH A 68 178 121 HOH HOH . G 6 HOH A 69 179 127 HOH HOH . G 6 HOH A 70 180 128 HOH HOH . G 6 HOH A 71 181 130 HOH HOH . G 6 HOH A 72 182 131 HOH HOH . H 6 HOH B 1 116 3 HOH HOH . H 6 HOH B 2 117 4 HOH HOH . H 6 HOH B 3 118 8 HOH HOH . H 6 HOH B 4 119 12 HOH HOH . H 6 HOH B 5 120 14 HOH HOH . H 6 HOH B 6 121 17 HOH HOH . H 6 HOH B 7 122 19 HOH HOH . H 6 HOH B 8 123 20 HOH HOH . H 6 HOH B 9 124 22 HOH HOH . H 6 HOH B 10 125 23 HOH HOH . H 6 HOH B 11 126 25 HOH HOH . H 6 HOH B 12 127 26 HOH HOH . H 6 HOH B 13 128 27 HOH HOH . H 6 HOH B 14 129 28 HOH HOH . H 6 HOH B 15 130 38 HOH HOH . H 6 HOH B 16 131 42 HOH HOH . H 6 HOH B 17 132 43 HOH HOH . H 6 HOH B 18 133 46 HOH HOH . H 6 HOH B 19 134 47 HOH HOH . H 6 HOH B 20 135 48 HOH HOH . H 6 HOH B 21 136 49 HOH HOH . H 6 HOH B 22 137 53 HOH HOH . H 6 HOH B 23 138 54 HOH HOH . H 6 HOH B 24 139 57 HOH HOH . H 6 HOH B 25 140 60 HOH HOH . H 6 HOH B 26 141 61 HOH HOH . H 6 HOH B 27 142 63 HOH HOH . H 6 HOH B 28 143 64 HOH HOH . H 6 HOH B 29 144 66 HOH HOH . H 6 HOH B 30 145 67 HOH HOH . H 6 HOH B 31 146 72 HOH HOH . H 6 HOH B 32 147 74 HOH HOH . H 6 HOH B 33 148 75 HOH HOH . H 6 HOH B 34 149 76 HOH HOH . H 6 HOH B 35 150 80 HOH HOH . H 6 HOH B 36 151 81 HOH HOH . H 6 HOH B 37 152 83 HOH HOH . H 6 HOH B 38 153 84 HOH HOH . H 6 HOH B 39 154 86 HOH HOH . H 6 HOH B 40 155 87 HOH HOH . H 6 HOH B 41 156 88 HOH HOH . H 6 HOH B 42 157 89 HOH HOH . H 6 HOH B 43 158 92 HOH HOH . H 6 HOH B 44 159 96 HOH HOH . H 6 HOH B 45 160 97 HOH HOH . H 6 HOH B 46 161 99 HOH HOH . H 6 HOH B 47 162 100 HOH HOH . H 6 HOH B 48 163 102 HOH HOH . H 6 HOH B 49 164 106 HOH HOH . H 6 HOH B 50 165 108 HOH HOH . H 6 HOH B 51 166 114 HOH HOH . H 6 HOH B 52 167 115 HOH HOH . H 6 HOH B 53 168 117 HOH HOH . H 6 HOH B 54 169 122 HOH HOH . H 6 HOH B 55 170 123 HOH HOH . H 6 HOH B 56 171 124 HOH HOH . H 6 HOH B 57 172 125 HOH HOH . H 6 HOH B 58 173 126 HOH HOH . H 6 HOH B 59 174 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . F 5 -24.711 -23.698 -8.704 1 37.42 ? O1 PG4 115 B 1 HETATM 2 C C1 PG4 . . . F 5 -25.824 -24.309 -9.371 1 35.94 ? C1 PG4 115 B 1 HETATM 3 C C2 PG4 . . . F 5 -26.481 -23.287 -10.286 1 31.67 ? C2 PG4 115 B 1 HETATM 4 O O2 PG4 . . . F 5 -27.844 -23.629 -10.532 1 39.92 ? O2 PG4 115 B 1 HETATM 5 C C3 PG4 . . . F 5 -28.685 -22.476 -10.45 1 32.75 ? C3 PG4 115 B 1 HETATM 6 C C4 PG4 . . . F 5 -29.803 -22.713 -9.438 1 28.05 ? C4 PG4 115 B 1 HETATM 7 O O3 PG4 . . . F 5 -29.798 -21.653 -8.483 1 32.02 ? O3 PG4 115 B 1 HETATM 8 C C5 PG4 . . . F 5 -30.88 -21.714 -7.559 1 22.69 ? C5 PG4 115 B 1 HETATM 9 C C6 PG4 . . . F 5 -30.409 -21.275 -6.177 1 27.01 ? C6 PG4 115 B 1 HETATM 10 O O4 PG4 . . . F 5 -29.972 -22.411 -5.435 1 28.41 ? O4 PG4 115 B 1 HETATM 11 C C7 PG4 . . . F 5 -29.182 -22.065 -4.305 1 31.2 ? C7 PG4 115 B 1 HETATM 12 C C8 PG4 . . . F 5 -28.54 -23.332 -3.743 1 38.02 ? C8 PG4 115 B 1 HETATM 13 O O5 PG4 . . . F 5 -27.379 -23.691 -4.506 1 37.45 ? O5 PG4 115 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 13 #