data_3DVE
#
_model_server_result.job_id            3vKL7t4HDSJNSYE7Z3k4Og 
_model_server_result.datetime_utc      '2024-12-27 01:58:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dve 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    3DVE 
#
_exptl.entry_id    3DVE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DVE 
_cell.length_a            40.303 
_cell.length_b            40.303 
_cell.length_c            344.652 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DVE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc3 A OD2 ASP 24 A ASP 24 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc4 A O THR 26 A THR 26 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc6 A OE2 GLU 31 A GLU 31 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc7 A OD2 ASP 56 A ASP 56 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc8 A OD2 ASP 58 A ASP 58 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc9 A OD1 ASN 60 A ASN 60 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc10 A O THR 62 A THR 62 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc11 A OE1 GLU 67 A GLU 67 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc12 A OE2 GLU 67 A GLU 67 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc13 A OD2 ASP 93 A ASP 93 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc14 A OD1 ASP 95 A ASP 95 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc15 A OD1 ASN 97 A ASN 97 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc16 A O TYR 99 A TYR 99 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc17 A OE1 GLU 104 A GLU 104 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc18 A OE2 GLU 104 A GLU 104 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc19 A OD2 ASP 129 A ASP 129 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc20 A OD1 ASP 131 A ASP 131 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc21 A OD2 ASP 133 A ASP 133 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc22 A O GLN 135 A GLN 135 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc23 A OE1 GLU 140 A GLU 140 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc24 A OE2 GLU 140 A GLU 140 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc25 C CA CA . A CA 501 1_555 H O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc26 D CA CA . A CA 502 1_555 H O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc27 E CA CA . A CA 503 1_555 H O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc28 F CA CA . A CA 504 1_555 H O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3DVE 
_atom_sites.fract_transf_matrix[1][1]    0.024812 
_atom_sites.fract_transf_matrix[1][2]    0.014325 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02865 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002901 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 501 501 CA CA . 
D 3 CA A 1 502 502 CA CA . 
E 3 CA A 1 503 503 CA CA . 
F 3 CA A 1 504 504 CA CA . 
G 4 NI A 1 505 505 NI NI . 
H 5 HOH A 1 506 1 HOH HOH . 
H 5 HOH A 2 507 2 HOH HOH . 
H 5 HOH A 3 508 3 HOH HOH . 
H 5 HOH A 4 509 4 HOH HOH . 
H 5 HOH A 5 510 5 HOH HOH . 
H 5 HOH A 6 511 6 HOH HOH . 
H 5 HOH A 7 512 7 HOH HOH . 
H 5 HOH A 8 513 8 HOH HOH . 
H 5 HOH A 9 514 9 HOH HOH . 
H 5 HOH A 10 515 10 HOH HOH . 
H 5 HOH A 11 516 11 HOH HOH . 
H 5 HOH A 12 517 12 HOH HOH . 
H 5 HOH A 13 518 13 HOH HOH . 
H 5 HOH A 14 519 15 HOH HOH . 
H 5 HOH A 15 520 16 HOH HOH . 
H 5 HOH A 16 521 17 HOH HOH . 
H 5 HOH A 17 522 18 HOH HOH . 
H 5 HOH A 18 523 19 HOH HOH . 
H 5 HOH A 19 524 20 HOH HOH . 
H 5 HOH A 20 525 21 HOH HOH . 
H 5 HOH A 21 526 22 HOH HOH . 
H 5 HOH A 22 527 23 HOH HOH . 
H 5 HOH A 23 528 24 HOH HOH . 
H 5 HOH A 24 529 25 HOH HOH . 
H 5 HOH A 25 530 26 HOH HOH . 
H 5 HOH A 26 531 27 HOH HOH . 
H 5 HOH A 27 532 28 HOH HOH . 
H 5 HOH A 28 533 29 HOH HOH . 
H 5 HOH A 29 534 30 HOH HOH . 
H 5 HOH A 30 535 31 HOH HOH . 
H 5 HOH A 31 536 32 HOH HOH . 
H 5 HOH A 32 537 33 HOH HOH . 
H 5 HOH A 33 538 34 HOH HOH . 
H 5 HOH A 34 539 35 HOH HOH . 
H 5 HOH A 35 540 36 HOH HOH . 
H 5 HOH A 36 541 37 HOH HOH . 
H 5 HOH A 37 542 38 HOH HOH . 
H 5 HOH A 38 543 40 HOH HOH . 
H 5 HOH A 39 544 41 HOH HOH . 
H 5 HOH A 40 545 42 HOH HOH . 
H 5 HOH A 41 546 43 HOH HOH . 
H 5 HOH A 42 547 45 HOH HOH . 
H 5 HOH A 43 548 46 HOH HOH . 
H 5 HOH A 44 549 47 HOH HOH . 
H 5 HOH A 45 550 48 HOH HOH . 
H 5 HOH A 46 551 49 HOH HOH . 
H 5 HOH A 47 552 50 HOH HOH . 
H 5 HOH A 48 553 51 HOH HOH . 
H 5 HOH A 49 554 52 HOH HOH . 
H 5 HOH A 50 555 53 HOH HOH . 
H 5 HOH A 51 556 54 HOH HOH . 
H 5 HOH A 52 557 55 HOH HOH . 
H 5 HOH A 53 558 56 HOH HOH . 
H 5 HOH A 54 559 57 HOH HOH . 
H 5 HOH A 55 560 58 HOH HOH . 
H 5 HOH A 56 561 59 HOH HOH . 
H 5 HOH A 57 562 60 HOH HOH . 
H 5 HOH A 58 563 62 HOH HOH . 
H 5 HOH A 59 564 63 HOH HOH . 
H 5 HOH A 60 565 64 HOH HOH . 
H 5 HOH A 61 566 65 HOH HOH . 
H 5 HOH A 62 567 66 HOH HOH . 
H 5 HOH A 63 568 67 HOH HOH . 
H 5 HOH A 64 569 68 HOH HOH . 
H 5 HOH A 65 570 69 HOH HOH . 
H 5 HOH A 66 571 70 HOH HOH . 
H 5 HOH A 67 572 71 HOH HOH . 
H 5 HOH A 68 573 72 HOH HOH . 
H 5 HOH A 69 574 73 HOH HOH . 
H 5 HOH A 70 575 74 HOH HOH . 
H 5 HOH A 71 576 75 HOH HOH . 
H 5 HOH A 72 577 76 HOH HOH . 
H 5 HOH A 73 578 77 HOH HOH . 
H 5 HOH A 74 579 78 HOH HOH . 
I 5 HOH B 1 14 14 HOH HOH . 
I 5 HOH B 2 39 39 HOH HOH . 
I 5 HOH B 3 44 44 HOH HOH . 
I 5 HOH B 4 61 61 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -3.585 
_atom_site.Cartn_y               32.406 
_atom_site.Cartn_z               25.087 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        30.32 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           1 
#