data_3DVR
#
_model_server_result.job_id            I5iLIpkJb4S4OEUs1wfvgw 
_model_server_result.datetime_utc      '2024-12-26 21:31:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dvr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":280}' 
#
_entry.id    3DVR 
#
_exptl.entry_id    3DVR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DVR 
_cell.length_a            67.963 
_cell.length_b            67.963 
_cell.length_c            102.196 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DVR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 34 X CYS 34 1_555 A SG CYS 123 X CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 178 X CYS 178 1_555 A SG CYS 249 X CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc1 A O GLU 174 X GLU 174 1_555 B CA CA . X CA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? 
metalc ? metalc2 A O VAL 177 X VAL 177 1_555 B CA CA . X CA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc3 A OG1 THR 179 X THR 179 1_555 B CA CA . X CA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc4 A OD2 ASP 200 X ASP 200 1_555 B CA CA . X CA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? 
metalc ? metalc5 B CA CA . X CA 280 1_555 C O HOH . X HOH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc6 B CA CA . X CA 280 1_555 C O HOH . X HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3DVR 
_atom_sites.fract_transf_matrix[1][1]    0.014714 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014714 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA X 1 280 280 CA CA . 
C 3 HOH X 1 299 281 HOH HOH . 
C 3 HOH X 2 300 300 HOH HOH . 
C 3 HOH X 3 301 301 HOH HOH . 
C 3 HOH X 4 302 302 HOH HOH . 
C 3 HOH X 5 303 303 HOH HOH . 
C 3 HOH X 6 304 304 HOH HOH . 
C 3 HOH X 7 305 305 HOH HOH . 
C 3 HOH X 8 306 306 HOH HOH . 
C 3 HOH X 9 307 307 HOH HOH . 
C 3 HOH X 10 308 308 HOH HOH . 
C 3 HOH X 11 309 309 HOH HOH . 
C 3 HOH X 12 310 310 HOH HOH . 
C 3 HOH X 13 311 311 HOH HOH . 
C 3 HOH X 14 312 312 HOH HOH . 
C 3 HOH X 15 313 313 HOH HOH . 
C 3 HOH X 16 314 314 HOH HOH . 
C 3 HOH X 17 315 315 HOH HOH . 
C 3 HOH X 18 316 316 HOH HOH . 
C 3 HOH X 19 317 317 HOH HOH . 
C 3 HOH X 20 318 318 HOH HOH . 
C 3 HOH X 21 319 319 HOH HOH . 
C 3 HOH X 22 320 320 HOH HOH . 
C 3 HOH X 23 321 321 HOH HOH . 
C 3 HOH X 24 322 322 HOH HOH . 
C 3 HOH X 25 323 323 HOH HOH . 
C 3 HOH X 26 324 324 HOH HOH . 
C 3 HOH X 27 325 325 HOH HOH . 
C 3 HOH X 28 326 326 HOH HOH . 
C 3 HOH X 29 327 327 HOH HOH . 
C 3 HOH X 30 328 328 HOH HOH . 
C 3 HOH X 31 329 329 HOH HOH . 
C 3 HOH X 32 330 330 HOH HOH . 
C 3 HOH X 33 331 331 HOH HOH . 
C 3 HOH X 34 332 332 HOH HOH . 
C 3 HOH X 35 333 333 HOH HOH . 
C 3 HOH X 36 334 334 HOH HOH . 
C 3 HOH X 37 335 335 HOH HOH . 
C 3 HOH X 38 336 336 HOH HOH . 
C 3 HOH X 39 337 337 HOH HOH . 
C 3 HOH X 40 338 338 HOH HOH . 
C 3 HOH X 41 339 339 HOH HOH . 
C 3 HOH X 42 340 340 HOH HOH . 
C 3 HOH X 43 341 341 HOH HOH . 
C 3 HOH X 44 342 342 HOH HOH . 
C 3 HOH X 45 343 343 HOH HOH . 
C 3 HOH X 46 344 344 HOH HOH . 
C 3 HOH X 47 345 345 HOH HOH . 
C 3 HOH X 48 346 346 HOH HOH . 
C 3 HOH X 49 347 347 HOH HOH . 
C 3 HOH X 50 348 348 HOH HOH . 
C 3 HOH X 51 349 349 HOH HOH . 
C 3 HOH X 52 350 350 HOH HOH . 
C 3 HOH X 53 351 351 HOH HOH . 
C 3 HOH X 54 352 352 HOH HOH . 
C 3 HOH X 55 353 353 HOH HOH . 
C 3 HOH X 56 354 354 HOH HOH . 
C 3 HOH X 57 355 355 HOH HOH . 
C 3 HOH X 58 356 356 HOH HOH . 
C 3 HOH X 59 357 357 HOH HOH . 
C 3 HOH X 60 358 358 HOH HOH . 
C 3 HOH X 61 359 359 HOH HOH . 
C 3 HOH X 62 360 360 HOH HOH . 
C 3 HOH X 63 361 361 HOH HOH . 
C 3 HOH X 64 362 362 HOH HOH . 
C 3 HOH X 65 363 363 HOH HOH . 
C 3 HOH X 66 364 364 HOH HOH . 
C 3 HOH X 67 365 365 HOH HOH . 
C 3 HOH X 68 366 366 HOH HOH . 
C 3 HOH X 69 367 367 HOH HOH . 
C 3 HOH X 70 368 368 HOH HOH . 
C 3 HOH X 71 369 369 HOH HOH . 
C 3 HOH X 72 370 370 HOH HOH . 
C 3 HOH X 73 371 371 HOH HOH . 
C 3 HOH X 74 372 372 HOH HOH . 
C 3 HOH X 75 373 373 HOH HOH . 
C 3 HOH X 76 374 374 HOH HOH . 
C 3 HOH X 77 375 375 HOH HOH . 
C 3 HOH X 78 376 376 HOH HOH . 
C 3 HOH X 79 377 377 HOH HOH . 
C 3 HOH X 80 378 378 HOH HOH . 
C 3 HOH X 81 379 379 HOH HOH . 
C 3 HOH X 82 380 380 HOH HOH . 
C 3 HOH X 83 381 381 HOH HOH . 
C 3 HOH X 84 382 382 HOH HOH . 
C 3 HOH X 85 383 383 HOH HOH . 
C 3 HOH X 86 384 384 HOH HOH . 
C 3 HOH X 87 385 385 HOH HOH . 
C 3 HOH X 88 386 386 HOH HOH . 
C 3 HOH X 89 387 387 HOH HOH . 
C 3 HOH X 90 388 388 HOH HOH . 
C 3 HOH X 91 389 389 HOH HOH . 
C 3 HOH X 92 390 390 HOH HOH . 
C 3 HOH X 93 391 391 HOH HOH . 
C 3 HOH X 94 392 392 HOH HOH . 
C 3 HOH X 95 393 393 HOH HOH . 
C 3 HOH X 96 394 394 HOH HOH . 
C 3 HOH X 97 395 395 HOH HOH . 
C 3 HOH X 98 396 396 HOH HOH . 
C 3 HOH X 99 397 397 HOH HOH . 
C 3 HOH X 100 398 398 HOH HOH . 
C 3 HOH X 101 399 399 HOH HOH . 
C 3 HOH X 102 400 400 HOH HOH . 
C 3 HOH X 103 401 401 HOH HOH . 
C 3 HOH X 104 402 402 HOH HOH . 
C 3 HOH X 105 403 403 HOH HOH . 
C 3 HOH X 106 404 404 HOH HOH . 
C 3 HOH X 107 405 405 HOH HOH . 
C 3 HOH X 108 406 406 HOH HOH . 
C 3 HOH X 109 407 407 HOH HOH . 
C 3 HOH X 110 408 408 HOH HOH . 
C 3 HOH X 111 409 409 HOH HOH . 
C 3 HOH X 112 410 410 HOH HOH . 
C 3 HOH X 113 411 411 HOH HOH . 
C 3 HOH X 114 412 412 HOH HOH . 
C 3 HOH X 115 413 413 HOH HOH . 
C 3 HOH X 116 414 414 HOH HOH . 
C 3 HOH X 117 415 415 HOH HOH . 
C 3 HOH X 118 416 416 HOH HOH . 
C 3 HOH X 119 417 417 HOH HOH . 
C 3 HOH X 120 418 418 HOH HOH . 
C 3 HOH X 121 419 419 HOH HOH . 
C 3 HOH X 122 420 420 HOH HOH . 
C 3 HOH X 123 421 421 HOH HOH . 
C 3 HOH X 124 422 422 HOH HOH . 
C 3 HOH X 125 423 423 HOH HOH . 
C 3 HOH X 126 424 424 HOH HOH . 
C 3 HOH X 127 425 425 HOH HOH . 
C 3 HOH X 128 426 426 HOH HOH . 
C 3 HOH X 129 427 427 HOH HOH . 
C 3 HOH X 130 428 428 HOH HOH . 
C 3 HOH X 131 429 429 HOH HOH . 
C 3 HOH X 132 430 430 HOH HOH . 
C 3 HOH X 133 431 431 HOH HOH . 
C 3 HOH X 134 432 432 HOH HOH . 
C 3 HOH X 135 433 433 HOH HOH . 
C 3 HOH X 136 434 434 HOH HOH . 
C 3 HOH X 137 435 435 HOH HOH . 
C 3 HOH X 138 436 436 HOH HOH . 
C 3 HOH X 139 437 437 HOH HOH . 
C 3 HOH X 140 438 438 HOH HOH . 
C 3 HOH X 141 439 439 HOH HOH . 
C 3 HOH X 142 440 440 HOH HOH . 
C 3 HOH X 143 441 441 HOH HOH . 
C 3 HOH X 144 442 442 HOH HOH . 
C 3 HOH X 145 443 443 HOH HOH . 
C 3 HOH X 146 444 444 HOH HOH . 
C 3 HOH X 147 445 445 HOH HOH . 
C 3 HOH X 148 446 446 HOH HOH . 
C 3 HOH X 149 447 447 HOH HOH . 
C 3 HOH X 150 448 448 HOH HOH . 
C 3 HOH X 151 449 449 HOH HOH . 
C 3 HOH X 152 450 450 HOH HOH . 
C 3 HOH X 153 451 451 HOH HOH . 
C 3 HOH X 154 452 452 HOH HOH . 
C 3 HOH X 155 453 453 HOH HOH . 
C 3 HOH X 156 454 454 HOH HOH . 
C 3 HOH X 157 455 455 HOH HOH . 
C 3 HOH X 158 456 456 HOH HOH . 
C 3 HOH X 159 457 457 HOH HOH . 
C 3 HOH X 160 458 458 HOH HOH . 
C 3 HOH X 161 459 459 HOH HOH . 
C 3 HOH X 162 460 460 HOH HOH . 
C 3 HOH X 163 461 461 HOH HOH . 
C 3 HOH X 164 462 462 HOH HOH . 
C 3 HOH X 165 463 463 HOH HOH . 
C 3 HOH X 166 464 464 HOH HOH . 
C 3 HOH X 167 465 465 HOH HOH . 
C 3 HOH X 168 466 466 HOH HOH . 
C 3 HOH X 169 467 467 HOH HOH . 
C 3 HOH X 170 468 468 HOH HOH . 
C 3 HOH X 171 469 469 HOH HOH . 
C 3 HOH X 172 470 470 HOH HOH . 
C 3 HOH X 173 471 471 HOH HOH . 
C 3 HOH X 174 472 472 HOH HOH . 
C 3 HOH X 175 473 473 HOH HOH . 
C 3 HOH X 176 474 474 HOH HOH . 
C 3 HOH X 177 475 475 HOH HOH . 
C 3 HOH X 178 476 476 HOH HOH . 
C 3 HOH X 179 477 477 HOH HOH . 
C 3 HOH X 180 478 478 HOH HOH . 
C 3 HOH X 181 479 479 HOH HOH . 
C 3 HOH X 182 480 480 HOH HOH . 
C 3 HOH X 183 481 481 HOH HOH . 
C 3 HOH X 184 483 483 HOH HOH . 
C 3 HOH X 185 484 484 HOH HOH . 
C 3 HOH X 186 485 485 HOH HOH . 
C 3 HOH X 187 486 486 HOH HOH . 
C 3 HOH X 188 487 487 HOH HOH . 
C 3 HOH X 189 488 488 HOH HOH . 
C 3 HOH X 190 489 489 HOH HOH . 
C 3 HOH X 191 490 490 HOH HOH . 
C 3 HOH X 192 491 491 HOH HOH . 
C 3 HOH X 193 492 492 HOH HOH . 
C 3 HOH X 194 493 493 HOH HOH . 
C 3 HOH X 195 494 494 HOH HOH . 
C 3 HOH X 196 495 495 HOH HOH . 
C 3 HOH X 197 496 496 HOH HOH . 
C 3 HOH X 198 497 497 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -33.972 
_atom_site.Cartn_y               14.349 
_atom_site.Cartn_z               2.053 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        9.46 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           280 
_atom_site.auth_asym_id          X 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#