data_3DVX # _model_server_result.job_id Ww0HDjr1l8bE8kh2qX3XdA _model_server_result.datetime_utc '2024-10-14 08:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":197}' # _entry.id 3DVX # _exptl.entry_id 3DVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DVX _cell.length_a 159.979 _cell.length_b 159.979 _cell.length_c 76.888 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 68 A GLU 67 1_555 A N MSE 69 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 69 A MSE 68 1_555 A N LEU 70 A LEU 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ARG 74 A ARG 73 1_555 A N MSE 75 A MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 75 A MSE 74 1_555 A N ALA 76 A ALA 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C LEU 124 A LEU 123 1_555 A N MSE 125 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 125 A MSE 124 1_555 A N ARG 126 A ARG 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C LYS 139 A LYS 138 1_555 A N MSE 140 A MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 140 A MSE 139 1_555 A N GLN 141 A GLN 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C GLU 68 B GLU 67 1_555 B N MSE 69 B MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C MSE 69 B MSE 68 1_555 B N LEU 70 B LEU 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C ARG 74 B ARG 73 1_555 B N MSE 75 B MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 75 B MSE 74 1_555 B N ALA 76 B ALA 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 B C LEU 124 B LEU 123 1_555 B N MSE 125 B MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C MSE 125 B MSE 124 1_555 B N ARG 126 B ARG 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C LYS 139 B LYS 138 1_555 B N MSE 140 B MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 B C MSE 140 B MSE 139 1_555 B N GLN 141 B GLN 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 3DVX _atom_sites.fract_transf_matrix[1][1] 0.006251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 196 192 SO4 SO4 . D 2 SO4 A 1 197 197 SO4 SO4 . E 2 SO4 B 1 196 193 SO4 SO4 . F 2 SO4 B 1 197 196 SO4 SO4 . G 3 HOH A 1 198 194 HOH HOH . G 3 HOH A 2 199 195 HOH HOH . G 3 HOH A 3 200 196 HOH HOH . G 3 HOH A 4 201 197 HOH HOH . G 3 HOH A 5 202 198 HOH HOH . G 3 HOH A 6 203 199 HOH HOH . G 3 HOH A 7 204 200 HOH HOH . G 3 HOH A 8 205 201 HOH HOH . G 3 HOH A 9 206 202 HOH HOH . G 3 HOH A 10 207 203 HOH HOH . G 3 HOH A 11 208 204 HOH HOH . G 3 HOH A 12 209 205 HOH HOH . G 3 HOH A 13 210 206 HOH HOH . G 3 HOH A 14 211 207 HOH HOH . G 3 HOH A 15 212 208 HOH HOH . G 3 HOH A 16 213 209 HOH HOH . G 3 HOH A 17 214 210 HOH HOH . G 3 HOH A 18 215 211 HOH HOH . G 3 HOH A 19 216 212 HOH HOH . G 3 HOH A 20 217 213 HOH HOH . H 3 HOH B 1 198 198 HOH HOH . H 3 HOH B 2 199 199 HOH HOH . H 3 HOH B 3 200 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 2 10.907 11.684 31.435 1 78.66 ? S SO4 197 B 1 HETATM 2 O O1 SO4 . . . F 2 12.192 12.006 30.832 1 78.62 ? O1 SO4 197 B 1 HETATM 3 O O2 SO4 . . . F 2 10.192 10.732 30.584 1 78.52 ? O2 SO4 197 B 1 HETATM 4 O O3 SO4 . . . F 2 11.18 11.103 32.745 1 78.59 ? O3 SO4 197 B 1 HETATM 5 O O4 SO4 . . . F 2 10.105 12.896 31.589 1 78.56 ? O4 SO4 197 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #