data_3DW8 # _model_server_result.job_id ZXDSHUmSeyvgOALnUrzSmg _model_server_result.datetime_utc '2025-03-05 18:40:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":511}' # _entry.id 3DW8 # _exptl.entry_id 3DW8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 132.6 _cell.angle_gamma 90 _cell.entry_id 3DW8 _cell.length_a 247.34 _cell.length_b 121.39 _cell.length_c 172.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,I,J 1 1 D,E,F,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C SG CYS 269 C CYS 269 1_555 G CB DAM 7 G DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale2 F SG CYS 269 F CYS 269 1_555 H CB DAM 7 H DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale3 G C DAL 1 G DAL 1 1_555 G N LEU 2 G LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 G N DAL 1 G DAL 1 1_555 G C DAM 7 G DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 G C LEU 2 G LEU 2 1_555 G N ACB 3 G ACB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 G CG ACB 3 G ACB 3 1_555 G N ARG 4 G ARG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 G C ARG 4 G ARG 4 1_555 G N 1ZN 5 G 1ZN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 G C 1ZN 5 G 1ZN 5 1_555 G N FGA 6 G FGA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 G CD FGA 6 G FGA 6 1_555 G N DAM 7 G DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale10 H C DAL 1 H DAL 1 1_555 H N LEU 2 H LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 H N DAL 1 H DAL 1 1_555 H C DAM 7 H DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 H C LEU 2 H LEU 2 1_555 H N ACB 3 H ACB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 H CG ACB 3 H ACB 3 1_555 H N ARG 4 H ARG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 H C ARG 4 H ARG 4 1_555 H N 1ZN 5 H 1ZN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 H C 1ZN 5 H 1ZN 5 1_555 H N FGA 6 H FGA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 H CD FGA 6 H FGA 6 1_555 H N DAM 7 H DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 C OD2 ASP 57 C ASP 57 1_555 J MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 C NE2 HIS 59 C HIS 59 1_555 J MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 C OD2 ASP 85 C ASP 85 1_555 I MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 C OD2 ASP 85 C ASP 85 1_555 J MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc5 C OD1 ASN 117 C ASN 117 1_555 I MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc6 C NE2 HIS 167 C HIS 167 1_555 I MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 C ND1 HIS 241 C HIS 241 1_555 I MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc8 I MN MN . C MN 501 1_555 J MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc9 F OD2 ASP 57 F ASP 57 1_555 L MN MN . F MN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc10 F NE2 HIS 59 F HIS 59 1_555 L MN MN . F MN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc11 F OD2 ASP 85 F ASP 85 1_555 K MN MN . F MN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc12 F OD2 ASP 85 F ASP 85 1_555 L MN MN . F MN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc13 F OD1 ASN 117 F ASN 117 1_555 K MN MN . F MN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 F NE2 HIS 167 F HIS 167 1_555 K MN MN . F MN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc15 F ND1 HIS 241 F HIS 241 1_555 K MN MN . F MN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DW8 _atom_sites.fract_transf_matrix[1][1] 0.004043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003718 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 MN C 1 501 501 MN MN . J 5 MN C 1 502 502 MN MN . K 5 MN F 1 511 511 MN MN . L 5 MN F 1 512 512 MN MN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 5 _atom_site.Cartn_x -53.552 _atom_site.Cartn_y -0.73 _atom_site.Cartn_z 21.148 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 511 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #