data_3DWL # _model_server_result.job_id 6ek5d6PAr7du8GyjGCPhgw _model_server_result.datetime_utc '2024-10-20 03:49:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":428}' # _entry.id 3DWL # _exptl.entry_id 3DWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DWL _cell.length_a 218.967 _cell.length_b 218.967 _cell.length_c 315.049 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M 1 1 G,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 N N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3DWL _atom_sites.fract_transf_matrix[1][1] 0.004567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 7 ATP A 1 428 1 ATP ATP . N 7 ATP B 1 428 2 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . M 7 53.55 -83.941 -11.433 1 106.78 ? PG ATP 428 A 1 HETATM 2 O O1G ATP . . . M 7 52.166 -84.444 -11.783 1 106.96 ? O1G ATP 428 A 1 HETATM 3 O O2G ATP . . . M 7 54.217 -84.698 -10.303 1 106.72 ? O2G ATP 428 A 1 HETATM 4 O O3G ATP . . . M 7 54.45 -83.705 -12.628 1 106.82 ? O3G ATP 428 A 1 HETATM 5 P PB ATP . . . M 7 54.397 -81.711 -9.972 1 103.32 ? PB ATP 428 A 1 HETATM 6 O O1B ATP . . . M 7 54.361 -82.304 -8.585 1 103.35 ? O1B ATP 428 A 1 HETATM 7 O O2B ATP . . . M 7 55.68 -81.705 -10.766 1 103.35 ? O2B ATP 428 A 1 HETATM 8 O O3B ATP . . . M 7 53.272 -82.463 -10.842 1 105.04 ? O3B ATP 428 A 1 HETATM 9 P PA ATP . . . M 7 53.517 -79.536 -8.492 1 100.63 ? PA ATP 428 A 1 HETATM 10 O O1A ATP . . . M 7 52.479 -80.418 -7.845 1 100.52 ? O1A ATP 428 A 1 HETATM 11 O O2A ATP . . . M 7 54.809 -79.213 -7.78 1 101.02 ? O2A ATP 428 A 1 HETATM 12 O O3A ATP . . . M 7 53.878 -80.195 -9.909 1 101.95 ? O3A ATP 428 A 1 HETATM 13 O O5' ATP . . . M 7 52.825 -78.15 -8.908 1 99.84 ? O5' ATP 428 A 1 HETATM 14 C C5' ATP . . . M 7 51.847 -78.15 -9.941 1 98.98 ? C5' ATP 428 A 1 HETATM 15 C C4' ATP . . . M 7 50.868 -77.017 -9.708 1 98.26 ? C4' ATP 428 A 1 HETATM 16 O O4' ATP . . . M 7 50.782 -76.724 -8.313 1 98.03 ? O4' ATP 428 A 1 HETATM 17 C C3' ATP . . . M 7 51.339 -75.754 -10.409 1 97.97 ? C3' ATP 428 A 1 HETATM 18 O O3' ATP . . . M 7 50.388 -75.394 -11.416 1 98.04 ? O3' ATP 428 A 1 HETATM 19 C C2' ATP . . . M 7 51.42 -74.7 -9.323 1 97.72 ? C2' ATP 428 A 1 HETATM 20 O O2' ATP . . . M 7 50.837 -73.458 -9.728 1 97.44 ? O2' ATP 428 A 1 HETATM 21 C C1' ATP . . . M 7 50.646 -75.316 -8.169 1 97.98 ? C1' ATP 428 A 1 HETATM 22 N N9 ATP . . . M 7 51.166 -74.828 -6.873 1 97.96 ? N9 ATP 428 A 1 HETATM 23 C C8 ATP . . . M 7 52.424 -74.927 -6.407 1 98.11 ? C8 ATP 428 A 1 HETATM 24 N N7 ATP . . . M 7 52.536 -74.35 -5.183 1 97.98 ? N7 ATP 428 A 1 HETATM 25 C C5 ATP . . . M 7 51.327 -73.868 -4.854 1 97.88 ? C5 ATP 428 A 1 HETATM 26 C C6 ATP . . . M 7 50.738 -73.141 -3.705 1 98.09 ? C6 ATP 428 A 1 HETATM 27 N N6 ATP . . . M 7 51.483 -72.806 -2.627 1 98.27 ? N6 ATP 428 A 1 HETATM 28 N N1 ATP . . . M 7 49.425 -72.823 -3.766 1 98.15 ? N1 ATP 428 A 1 HETATM 29 C C2 ATP . . . M 7 48.665 -73.151 -4.83 1 98.17 ? C2 ATP 428 A 1 HETATM 30 N N3 ATP . . . M 7 49.13 -73.81 -5.907 1 98.05 ? N3 ATP 428 A 1 HETATM 31 C C4 ATP . . . M 7 50.43 -74.184 -5.975 1 97.88 ? C4 ATP 428 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #