data_3DWR # _model_server_result.job_id bN24yb0hjUEkSxVoyZfoCg _model_server_result.datetime_utc '2024-10-10 18:23:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dwr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":506}' # _entry.id 3DWR # _exptl.entry_id 3DWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.169 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'cyclopentylacetic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.06 _cell.angle_gamma 90 _cell.entry_id 3DWR _cell.length_a 75.487 _cell.length_b 48.06 _cell.length_c 84.442 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N # _chem_comp.formula 'C7 H12 O2' _chem_comp.formula_weight 128.169 _chem_comp.id 0PA _chem_comp.mon_nstd_flag . _chem_comp.name 'cyclopentylacetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 0PA doub 1 n n C2 C1 0PA sing 2 n n C1 O1 0PA sing 3 n n O1 HO1 0PA sing 4 n n C3 C2 0PA sing 5 n n C2 H2 0PA sing 6 n n C2 H2A 0PA sing 7 n n C4 C3 0PA sing 8 n n C7 C3 0PA sing 9 n n C3 H3 0PA sing 10 n n C5 C4 0PA sing 11 n n C4 H4 0PA sing 12 n n C4 H4A 0PA sing 13 n n C5 C6 0PA sing 14 n n C5 H5 0PA sing 15 n n C5 H5A 0PA sing 16 n n C6 C7 0PA sing 17 n n C6 H6 0PA sing 18 n n C6 H6A 0PA sing 19 n n C7 H7 0PA sing 20 n n C7 H7A 0PA sing 21 n n # _atom_sites.entry_id 3DWR _atom_sites.fract_transf_matrix[1][1] 0.013247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000014 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 402 402 ACT ACT . D 2 ACT A 1 403 403 ACT ACT . E 2 ACT A 1 404 404 ACT ACT . F 2 ACT A 1 405 405 ACT ACT . G 3 0PA A 1 501 501 0PA 0PA . H 3 0PA A 1 502 502 0PA 0PA . I 3 0PA A 1 503 503 0PA 0PA . J 2 ACT B 1 401 401 ACT ACT . K 3 0PA B 1 504 504 0PA 0PA . L 3 0PA B 1 505 505 0PA 0PA . M 3 0PA B 1 506 506 0PA 0PA . N 4 HOH A 1 504 504 HOH HOH . N 4 HOH A 2 505 505 HOH HOH . N 4 HOH A 3 506 506 HOH HOH . N 4 HOH A 4 507 507 HOH HOH . N 4 HOH A 5 508 508 HOH HOH . N 4 HOH A 6 509 509 HOH HOH . N 4 HOH A 7 510 510 HOH HOH . N 4 HOH A 8 511 511 HOH HOH . N 4 HOH A 9 512 512 HOH HOH . N 4 HOH A 10 513 513 HOH HOH . N 4 HOH A 11 514 514 HOH HOH . N 4 HOH A 12 515 515 HOH HOH . N 4 HOH A 13 516 516 HOH HOH . N 4 HOH A 14 517 517 HOH HOH . N 4 HOH A 15 518 518 HOH HOH . N 4 HOH A 16 519 519 HOH HOH . N 4 HOH A 17 520 520 HOH HOH . N 4 HOH A 18 521 521 HOH HOH . N 4 HOH A 19 522 522 HOH HOH . N 4 HOH A 20 523 523 HOH HOH . N 4 HOH A 21 524 524 HOH HOH . N 4 HOH A 22 525 525 HOH HOH . N 4 HOH A 23 526 526 HOH HOH . N 4 HOH A 24 527 527 HOH HOH . N 4 HOH A 25 528 528 HOH HOH . N 4 HOH A 26 529 529 HOH HOH . N 4 HOH A 27 530 530 HOH HOH . N 4 HOH A 28 531 531 HOH HOH . N 4 HOH A 29 532 532 HOH HOH . N 4 HOH A 30 533 533 HOH HOH . N 4 HOH A 31 534 534 HOH HOH . N 4 HOH A 32 535 535 HOH HOH . N 4 HOH A 33 536 536 HOH HOH . N 4 HOH A 34 537 537 HOH HOH . N 4 HOH A 35 538 538 HOH HOH . N 4 HOH A 36 539 539 HOH HOH . N 4 HOH A 37 540 540 HOH HOH . N 4 HOH A 38 541 541 HOH HOH . N 4 HOH A 39 542 542 HOH HOH . N 4 HOH A 40 543 543 HOH HOH . N 4 HOH A 41 544 544 HOH HOH . N 4 HOH A 42 545 545 HOH HOH . N 4 HOH A 43 546 546 HOH HOH . N 4 HOH A 44 547 547 HOH HOH . N 4 HOH A 45 548 548 HOH HOH . N 4 HOH A 46 549 549 HOH HOH . N 4 HOH A 47 550 550 HOH HOH . N 4 HOH A 48 551 551 HOH HOH . N 4 HOH A 49 552 552 HOH HOH . N 4 HOH A 50 553 553 HOH HOH . N 4 HOH A 51 554 554 HOH HOH . N 4 HOH A 52 555 555 HOH HOH . N 4 HOH A 53 556 556 HOH HOH . N 4 HOH A 54 557 557 HOH HOH . N 4 HOH A 55 558 558 HOH HOH . N 4 HOH A 56 559 559 HOH HOH . N 4 HOH A 57 560 560 HOH HOH . N 4 HOH A 58 561 561 HOH HOH . N 4 HOH A 59 562 562 HOH HOH . N 4 HOH A 60 563 563 HOH HOH . N 4 HOH A 61 564 564 HOH HOH . N 4 HOH A 62 565 565 HOH HOH . N 4 HOH A 63 566 566 HOH HOH . N 4 HOH A 64 567 567 HOH HOH . N 4 HOH A 65 568 568 HOH HOH . N 4 HOH A 66 569 569 HOH HOH . N 4 HOH A 67 570 570 HOH HOH . N 4 HOH A 68 571 571 HOH HOH . N 4 HOH A 69 572 572 HOH HOH . N 4 HOH A 70 573 573 HOH HOH . N 4 HOH A 71 574 574 HOH HOH . N 4 HOH A 72 575 575 HOH HOH . N 4 HOH A 73 576 576 HOH HOH . N 4 HOH A 74 577 577 HOH HOH . N 4 HOH A 75 578 578 HOH HOH . N 4 HOH A 76 579 579 HOH HOH . N 4 HOH A 77 580 580 HOH HOH . N 4 HOH A 78 581 581 HOH HOH . N 4 HOH A 79 582 582 HOH HOH . N 4 HOH A 80 583 583 HOH HOH . N 4 HOH A 81 584 584 HOH HOH . N 4 HOH A 82 585 585 HOH HOH . N 4 HOH A 83 586 586 HOH HOH . N 4 HOH A 84 587 587 HOH HOH . N 4 HOH A 85 588 588 HOH HOH . N 4 HOH A 86 589 589 HOH HOH . N 4 HOH A 87 590 590 HOH HOH . N 4 HOH A 88 591 591 HOH HOH . N 4 HOH A 89 592 592 HOH HOH . N 4 HOH A 90 593 593 HOH HOH . N 4 HOH A 91 594 594 HOH HOH . N 4 HOH A 92 595 595 HOH HOH . N 4 HOH A 93 596 596 HOH HOH . N 4 HOH A 94 597 597 HOH HOH . N 4 HOH A 95 598 598 HOH HOH . N 4 HOH A 96 599 599 HOH HOH . N 4 HOH A 97 600 600 HOH HOH . N 4 HOH A 98 601 601 HOH HOH . N 4 HOH A 99 602 602 HOH HOH . N 4 HOH A 100 603 603 HOH HOH . N 4 HOH A 101 604 604 HOH HOH . N 4 HOH A 102 605 605 HOH HOH . N 4 HOH A 103 606 606 HOH HOH . N 4 HOH A 104 607 607 HOH HOH . N 4 HOH A 105 608 608 HOH HOH . N 4 HOH A 106 609 609 HOH HOH . N 4 HOH A 107 610 610 HOH HOH . N 4 HOH A 108 611 611 HOH HOH . N 4 HOH A 109 612 612 HOH HOH . N 4 HOH A 110 613 613 HOH HOH . N 4 HOH A 111 614 614 HOH HOH . N 4 HOH A 112 615 615 HOH HOH . N 4 HOH A 113 616 616 HOH HOH . N 4 HOH A 114 617 617 HOH HOH . N 4 HOH A 115 618 618 HOH HOH . N 4 HOH A 116 619 619 HOH HOH . N 4 HOH A 117 620 620 HOH HOH . N 4 HOH A 118 621 621 HOH HOH . N 4 HOH A 119 622 622 HOH HOH . N 4 HOH A 120 623 623 HOH HOH . N 4 HOH A 121 624 624 HOH HOH . N 4 HOH A 122 625 625 HOH HOH . N 4 HOH A 123 626 626 HOH HOH . N 4 HOH A 124 627 627 HOH HOH . N 4 HOH A 125 628 628 HOH HOH . N 4 HOH A 126 629 629 HOH HOH . N 4 HOH A 127 630 630 HOH HOH . N 4 HOH A 128 631 631 HOH HOH . N 4 HOH A 129 632 632 HOH HOH . N 4 HOH A 130 633 633 HOH HOH . N 4 HOH A 131 634 634 HOH HOH . N 4 HOH A 132 635 635 HOH HOH . N 4 HOH A 133 636 636 HOH HOH . N 4 HOH A 134 637 637 HOH HOH . N 4 HOH A 135 638 638 HOH HOH . N 4 HOH A 136 639 639 HOH HOH . N 4 HOH A 137 640 640 HOH HOH . N 4 HOH A 138 641 641 HOH HOH . N 4 HOH A 139 642 642 HOH HOH . N 4 HOH A 140 643 643 HOH HOH . N 4 HOH A 141 644 644 HOH HOH . N 4 HOH A 142 645 645 HOH HOH . N 4 HOH A 143 646 646 HOH HOH . N 4 HOH A 144 647 647 HOH HOH . N 4 HOH A 145 648 648 HOH HOH . N 4 HOH A 146 649 649 HOH HOH . N 4 HOH A 147 650 650 HOH HOH . N 4 HOH A 148 651 651 HOH HOH . N 4 HOH A 149 652 652 HOH HOH . N 4 HOH A 150 653 653 HOH HOH . N 4 HOH A 151 654 654 HOH HOH . N 4 HOH A 152 655 655 HOH HOH . N 4 HOH A 153 656 656 HOH HOH . N 4 HOH A 154 657 657 HOH HOH . N 4 HOH A 155 658 658 HOH HOH . N 4 HOH A 156 659 659 HOH HOH . N 4 HOH A 157 660 660 HOH HOH . N 4 HOH A 158 661 661 HOH HOH . N 4 HOH A 159 662 662 HOH HOH . N 4 HOH A 160 663 663 HOH HOH . N 4 HOH A 161 664 664 HOH HOH . N 4 HOH A 162 665 665 HOH HOH . N 4 HOH A 163 666 666 HOH HOH . N 4 HOH A 164 667 667 HOH HOH . N 4 HOH A 165 668 668 HOH HOH . N 4 HOH A 166 669 669 HOH HOH . O 4 HOH B 1 507 507 HOH HOH . O 4 HOH B 2 508 508 HOH HOH . O 4 HOH B 3 509 509 HOH HOH . O 4 HOH B 4 510 510 HOH HOH . O 4 HOH B 5 511 511 HOH HOH . O 4 HOH B 6 512 512 HOH HOH . O 4 HOH B 7 513 513 HOH HOH . O 4 HOH B 8 514 514 HOH HOH . O 4 HOH B 9 515 515 HOH HOH . O 4 HOH B 10 516 516 HOH HOH . O 4 HOH B 11 517 517 HOH HOH . O 4 HOH B 12 518 518 HOH HOH . O 4 HOH B 13 519 519 HOH HOH . O 4 HOH B 14 520 520 HOH HOH . O 4 HOH B 15 521 521 HOH HOH . O 4 HOH B 16 522 522 HOH HOH . O 4 HOH B 17 523 523 HOH HOH . O 4 HOH B 18 524 524 HOH HOH . O 4 HOH B 19 525 525 HOH HOH . O 4 HOH B 20 526 526 HOH HOH . O 4 HOH B 21 527 527 HOH HOH . O 4 HOH B 22 528 528 HOH HOH . O 4 HOH B 23 529 529 HOH HOH . O 4 HOH B 24 530 530 HOH HOH . O 4 HOH B 25 531 531 HOH HOH . O 4 HOH B 26 532 532 HOH HOH . O 4 HOH B 27 533 533 HOH HOH . O 4 HOH B 28 534 534 HOH HOH . O 4 HOH B 29 535 535 HOH HOH . O 4 HOH B 30 536 536 HOH HOH . O 4 HOH B 31 537 537 HOH HOH . O 4 HOH B 32 538 538 HOH HOH . O 4 HOH B 33 539 539 HOH HOH . O 4 HOH B 34 540 540 HOH HOH . O 4 HOH B 35 541 541 HOH HOH . O 4 HOH B 36 542 542 HOH HOH . O 4 HOH B 37 543 543 HOH HOH . O 4 HOH B 38 544 544 HOH HOH . O 4 HOH B 39 545 545 HOH HOH . O 4 HOH B 40 546 546 HOH HOH . O 4 HOH B 41 547 547 HOH HOH . O 4 HOH B 42 548 548 HOH HOH . O 4 HOH B 43 549 549 HOH HOH . O 4 HOH B 44 550 550 HOH HOH . O 4 HOH B 45 551 551 HOH HOH . O 4 HOH B 46 552 552 HOH HOH . O 4 HOH B 47 553 553 HOH HOH . O 4 HOH B 48 554 554 HOH HOH . O 4 HOH B 49 555 555 HOH HOH . O 4 HOH B 50 556 556 HOH HOH . O 4 HOH B 51 557 557 HOH HOH . O 4 HOH B 52 558 558 HOH HOH . O 4 HOH B 53 559 559 HOH HOH . O 4 HOH B 54 560 560 HOH HOH . O 4 HOH B 55 561 561 HOH HOH . O 4 HOH B 56 562 562 HOH HOH . O 4 HOH B 57 563 563 HOH HOH . O 4 HOH B 58 564 564 HOH HOH . O 4 HOH B 59 565 565 HOH HOH . O 4 HOH B 60 566 566 HOH HOH . O 4 HOH B 61 567 567 HOH HOH . O 4 HOH B 62 568 568 HOH HOH . O 4 HOH B 63 569 569 HOH HOH . O 4 HOH B 64 570 570 HOH HOH . O 4 HOH B 65 571 571 HOH HOH . O 4 HOH B 66 572 572 HOH HOH . O 4 HOH B 67 573 573 HOH HOH . O 4 HOH B 68 574 574 HOH HOH . O 4 HOH B 69 575 575 HOH HOH . O 4 HOH B 70 576 576 HOH HOH . O 4 HOH B 71 577 577 HOH HOH . O 4 HOH B 72 578 578 HOH HOH . O 4 HOH B 73 579 579 HOH HOH . O 4 HOH B 74 580 580 HOH HOH . O 4 HOH B 75 581 581 HOH HOH . O 4 HOH B 76 582 582 HOH HOH . O 4 HOH B 77 583 583 HOH HOH . O 4 HOH B 78 584 584 HOH HOH . O 4 HOH B 79 585 585 HOH HOH . O 4 HOH B 80 586 586 HOH HOH . O 4 HOH B 81 587 587 HOH HOH . O 4 HOH B 82 588 588 HOH HOH . O 4 HOH B 83 589 589 HOH HOH . O 4 HOH B 84 590 590 HOH HOH . O 4 HOH B 85 591 591 HOH HOH . O 4 HOH B 86 592 592 HOH HOH . O 4 HOH B 87 593 593 HOH HOH . O 4 HOH B 88 594 594 HOH HOH . O 4 HOH B 89 595 595 HOH HOH . O 4 HOH B 90 596 596 HOH HOH . O 4 HOH B 91 597 597 HOH HOH . O 4 HOH B 92 598 598 HOH HOH . O 4 HOH B 93 599 599 HOH HOH . O 4 HOH B 94 600 600 HOH HOH . O 4 HOH B 95 601 601 HOH HOH . O 4 HOH B 96 602 602 HOH HOH . O 4 HOH B 97 603 603 HOH HOH . O 4 HOH B 98 604 604 HOH HOH . O 4 HOH B 99 605 605 HOH HOH . O 4 HOH B 100 606 606 HOH HOH . O 4 HOH B 101 607 607 HOH HOH . O 4 HOH B 102 608 608 HOH HOH . O 4 HOH B 103 609 609 HOH HOH . O 4 HOH B 104 610 610 HOH HOH . O 4 HOH B 105 611 611 HOH HOH . O 4 HOH B 106 612 612 HOH HOH . O 4 HOH B 107 613 613 HOH HOH . O 4 HOH B 108 614 614 HOH HOH . O 4 HOH B 109 615 615 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 0PA . . . M 3 2.8 47.076 15.333 0.5 48.69 ? O2 0PA 506 B 1 HETATM 2 C C1 0PA . . . M 3 1.875 47.071 14.492 0.5 48.52 ? C1 0PA 506 B 1 HETATM 3 O O1 0PA . . . M 3 0.957 46.223 14.488 0.5 47.67 ? O1 0PA 506 B 1 HETATM 4 C C2 0PA . . . M 3 1.876 48.164 13.453 0.5 48.6 ? C2 0PA 506 B 1 HETATM 5 C C3 0PA . . . M 3 1.983 47.6 12.046 0.5 48.55 ? C3 0PA 506 B 1 HETATM 6 C C4 0PA . . . M 3 3.301 46.863 11.846 0.5 48.54 ? C4 0PA 506 B 1 HETATM 7 C C5 0PA . . . M 3 4.224 47.786 11.059 0.5 48.43 ? C5 0PA 506 B 1 HETATM 8 C C6 0PA . . . M 3 3.425 49.028 10.685 0.5 48.37 ? C6 0PA 506 B 1 HETATM 9 C C7 0PA . . . M 3 1.978 48.771 11.075 0.5 48.38 ? C7 0PA 506 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #