data_3DWT
#
_model_server_result.job_id            kTtbMyFVyy6IPx2JoUEISQ 
_model_server_result.datetime_utc      '2024-11-23 10:58:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dwt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    3DWT 
#
_exptl.entry_id    3DWT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DWT 
_cell.length_a            76.72 
_cell.length_b            174.71 
_cell.length_c            115.53 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DWT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,K 1 1 
B,L 2 1 
C,M 3 1 
D,J,N 4 1 
E,O 5 1 
F,P 6 1 
G,Q 7 1 
H,R 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 99 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 99 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 99 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 99 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 E SG CYS 22 E CYS 22 1_555 E SG CYS 99 E CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 F SG CYS 22 F CYS 22 1_555 F SG CYS 99 F CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 G SG CYS 22 G CYS 22 1_555 G SG CYS 99 G CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 H SG CYS 22 H CYS 22 1_555 H SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3DWT 
_atom_sites.fract_transf_matrix[1][1]    0.013034 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GOL A 1 403 403 GOL GOL . 
J 2 GOL D 1 401 401 GOL GOL . 
K 3 HOH A 1 404 2 HOH HOH . 
K 3 HOH A 2 405 61 HOH HOH . 
K 3 HOH A 3 406 62 HOH HOH . 
K 3 HOH A 4 407 63 HOH HOH . 
K 3 HOH A 5 408 74 HOH HOH . 
K 3 HOH A 6 409 75 HOH HOH . 
K 3 HOH A 7 410 83 HOH HOH . 
K 3 HOH A 8 411 90 HOH HOH . 
K 3 HOH A 9 412 91 HOH HOH . 
K 3 HOH A 10 413 97 HOH HOH . 
K 3 HOH A 11 414 111 HOH HOH . 
L 3 HOH B 1 139 13 HOH HOH . 
L 3 HOH B 2 140 51 HOH HOH . 
L 3 HOH B 3 141 52 HOH HOH . 
L 3 HOH B 4 142 53 HOH HOH . 
L 3 HOH B 5 143 54 HOH HOH . 
L 3 HOH B 6 144 68 HOH HOH . 
L 3 HOH B 7 145 79 HOH HOH . 
L 3 HOH B 8 146 82 HOH HOH . 
L 3 HOH B 9 147 86 HOH HOH . 
L 3 HOH B 10 148 88 HOH HOH . 
L 3 HOH B 11 149 104 HOH HOH . 
L 3 HOH B 12 150 112 HOH HOH . 
L 3 HOH B 13 151 113 HOH HOH . 
L 3 HOH B 14 152 6 HOH HOH . 
L 3 HOH B 15 153 45 HOH HOH . 
L 3 HOH B 16 154 47 HOH HOH . 
M 3 HOH C 1 138 11 HOH HOH . 
M 3 HOH C 2 139 7 HOH HOH . 
M 3 HOH C 3 140 8 HOH HOH . 
M 3 HOH C 4 141 41 HOH HOH . 
M 3 HOH C 5 142 42 HOH HOH . 
M 3 HOH C 6 143 43 HOH HOH . 
M 3 HOH C 7 144 44 HOH HOH . 
M 3 HOH C 8 145 46 HOH HOH . 
M 3 HOH C 9 146 48 HOH HOH . 
M 3 HOH C 10 147 49 HOH HOH . 
M 3 HOH C 11 148 50 HOH HOH . 
M 3 HOH C 12 149 55 HOH HOH . 
M 3 HOH C 13 150 56 HOH HOH . 
M 3 HOH C 14 151 64 HOH HOH . 
M 3 HOH C 15 152 65 HOH HOH . 
M 3 HOH C 16 153 66 HOH HOH . 
M 3 HOH C 17 154 67 HOH HOH . 
M 3 HOH C 18 155 69 HOH HOH . 
M 3 HOH C 19 156 72 HOH HOH . 
M 3 HOH C 20 157 78 HOH HOH . 
M 3 HOH C 21 158 85 HOH HOH . 
M 3 HOH C 22 159 89 HOH HOH . 
M 3 HOH C 23 160 93 HOH HOH . 
M 3 HOH C 24 161 96 HOH HOH . 
M 3 HOH C 25 162 98 HOH HOH . 
M 3 HOH C 26 163 100 HOH HOH . 
M 3 HOH C 27 164 101 HOH HOH . 
M 3 HOH C 28 165 102 HOH HOH . 
M 3 HOH C 29 166 105 HOH HOH . 
M 3 HOH C 30 167 114 HOH HOH . 
M 3 HOH C 31 168 116 HOH HOH . 
M 3 HOH C 32 169 10 HOH HOH . 
N 3 HOH D 1 402 19 HOH HOH . 
N 3 HOH D 2 403 20 HOH HOH . 
N 3 HOH D 3 404 21 HOH HOH . 
N 3 HOH D 4 405 22 HOH HOH . 
N 3 HOH D 5 406 23 HOH HOH . 
N 3 HOH D 6 407 24 HOH HOH . 
N 3 HOH D 7 408 30 HOH HOH . 
N 3 HOH D 8 409 31 HOH HOH . 
N 3 HOH D 9 410 32 HOH HOH . 
N 3 HOH D 10 411 33 HOH HOH . 
N 3 HOH D 11 412 34 HOH HOH . 
N 3 HOH D 12 413 35 HOH HOH . 
N 3 HOH D 13 414 36 HOH HOH . 
N 3 HOH D 14 415 37 HOH HOH . 
N 3 HOH D 15 416 38 HOH HOH . 
N 3 HOH D 16 417 39 HOH HOH . 
N 3 HOH D 17 418 40 HOH HOH . 
N 3 HOH D 18 419 57 HOH HOH . 
N 3 HOH D 19 420 58 HOH HOH . 
N 3 HOH D 20 421 70 HOH HOH . 
N 3 HOH D 21 422 71 HOH HOH . 
N 3 HOH D 22 423 76 HOH HOH . 
N 3 HOH D 23 424 80 HOH HOH . 
N 3 HOH D 24 425 81 HOH HOH . 
N 3 HOH D 25 426 92 HOH HOH . 
N 3 HOH D 26 427 95 HOH HOH . 
N 3 HOH D 27 428 99 HOH HOH . 
N 3 HOH D 28 429 110 HOH HOH . 
O 3 HOH E 1 138 16 HOH HOH . 
O 3 HOH E 2 139 17 HOH HOH . 
O 3 HOH E 3 140 18 HOH HOH . 
O 3 HOH E 4 141 25 HOH HOH . 
O 3 HOH E 5 142 26 HOH HOH . 
O 3 HOH E 6 143 27 HOH HOH . 
O 3 HOH E 7 144 28 HOH HOH . 
O 3 HOH E 8 145 84 HOH HOH . 
O 3 HOH E 9 146 94 HOH HOH . 
O 3 HOH E 10 147 103 HOH HOH . 
O 3 HOH E 11 148 106 HOH HOH . 
O 3 HOH E 12 149 109 HOH HOH . 
O 3 HOH E 13 150 115 HOH HOH . 
P 3 HOH F 1 139 12 HOH HOH . 
P 3 HOH F 2 140 14 HOH HOH . 
P 3 HOH F 3 141 15 HOH HOH . 
P 3 HOH F 4 142 59 HOH HOH . 
P 3 HOH F 5 143 73 HOH HOH . 
P 3 HOH F 6 144 107 HOH HOH . 
P 3 HOH F 7 145 108 HOH HOH . 
P 3 HOH F 8 146 117 HOH HOH . 
Q 3 HOH G 1 138 5 HOH HOH . 
Q 3 HOH G 2 139 9 HOH HOH . 
Q 3 HOH G 3 140 60 HOH HOH . 
R 3 HOH H 1 138 1 HOH HOH . 
R 3 HOH H 2 139 3 HOH HOH . 
R 3 HOH H 3 140 4 HOH HOH . 
R 3 HOH H 4 141 77 HOH HOH . 
R 3 HOH H 5 142 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 2 -3.919 9.03 -11.89 1 72.15 ? C1 GOL 401 D 1 
HETATM 2 O O1 GOL . . . J 2 -3.886 9.758 -10.659 1 50.26 ? O1 GOL 401 D 1 
HETATM 3 C C2 GOL . . . J 2 -5.083 9.385 -12.861 1 89.95 ? C2 GOL 401 D 1 
HETATM 4 O O2 GOL . . . J 2 -5.707 10.642 -12.596 1 83.8 ? O2 GOL 401 D 1 
HETATM 5 C C3 GOL . . . J 2 -6.165 8.285 -12.844 1 85.01 ? C3 GOL 401 D 1 
HETATM 6 O O3 GOL . . . J 2 -6.2 7.641 -14.125 1 59.16 ? O3 GOL 401 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#